RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 CBX3Q13185 183 aa20.17■□□□□ 0.82
VPS28-205ENST00000526204 AGAP7PQ5VUJ5 663 aa20.17■□□□□ 0.82
VPS28-205ENST00000526204 PLAG1Q6DJT9 500 aa20.17■□□□□ 0.82
VPS28-205ENST00000526204 GPR32P1Q8NGA4 272 aa20.17■□□□□ 0.82
VPS28-205ENST00000526204 DHRS1Q96LJ7 313 aa20.17■□□□□ 0.82
VPS28-205ENST00000526204 TEFMQ96QE5 360 aaKnown RBP20.17■□□□□ 0.82
VPS28-205ENST00000526204 UGT2A1Q9Y4X1 527 aa20.17■□□□□ 0.82
VPS28-205ENST00000526204 PDE4DIPQ5VU43 2346 aa20.17■□□□□ 0.82
VPS28-205ENST00000526204 TRBV4-1A0A0J9YWV2 114 aa20.17■□□□□ 0.82
VPS28-205ENST00000526204 LOC100506127A0A0U1RQW1 187 aa20.17■□□□□ 0.82
VPS28-205ENST00000526204 M0R129 80 aa20.17■□□□□ 0.82
VPS28-205ENST00000526204 FAAHO00519 579 aa20.17■□□□□ 0.82
VPS28-205ENST00000526204 UPK1BO75841 260 aa20.17■□□□□ 0.82
VPS28-205ENST00000526204 FUT4P22083 530 aa20.17■□□□□ 0.82
VPS28-205ENST00000526204 POU1F1P28069 291 aa20.17■□□□□ 0.82
VPS28-205ENST00000526204 S100A5P33763 92 aa20.17■□□□□ 0.82
VPS28-205ENST00000526204 GJA8P48165 433 aa20.17■□□□□ 0.82
VPS28-205ENST00000526204 RPS3AP61247 264 aaKnown RBP20.17■□□□□ 0.82
VPS28-205ENST00000526204 SNRPGP62308 76 aaKnown RBP20.17■□□□□ 0.82
VPS28-205ENST00000526204 CDK3Q00526 305 aa20.17■□□□□ 0.82
VPS28-205ENST00000526204 ILKQ13418 452 aa20.17■□□□□ 0.82
VPS28-205ENST00000526204 MLC1Q15049 377 aa20.17■□□□□ 0.82
VPS28-205ENST00000526204 ZNF181Q2M3W8 571 aa20.17■□□□□ 0.82
VPS28-205ENST00000526204 DCST1Q5T197 706 aa20.17■□□□□ 0.82
VPS28-205ENST00000526204 ITFG2Q969R8 447 aa20.17■□□□□ 0.82
VPS28-205ENST00000526204 ZFYVE19Q96K21 471 aa20.17■□□□□ 0.82
VPS28-205ENST00000526204 ZNF354BQ96LW1 612 aa20.17■□□□□ 0.82
VPS28-205ENST00000526204 Q96MT0 163 aa20.17■□□□□ 0.82
VPS28-205ENST00000526204 C6orf62Q9GZU0 229 aaPredicted RBP20.17■□□□□ 0.82
VPS28-205ENST00000526204 SIRT3Q9NTG7 399 aaPredicted RBP20.17■□□□□ 0.82
VPS28-205ENST00000526204 LRRK1Q38SD2 2015 aa20.17■□□□□ 0.82
VPS28-205ENST00000526204 H7BY64 318 aa20.16■□□□□ 0.82
VPS28-205ENST00000526204 HMGN4O00479 90 aa20.16■□□□□ 0.82
VPS28-205ENST00000526204 HSMCR30P0CW71 290 aa20.16■□□□□ 0.82
VPS28-205ENST00000526204 SLC15A1P46059 708 aa20.16■□□□□ 0.82
VPS28-205ENST00000526204 KCNJ5P48544 419 aa20.16■□□□□ 0.82
VPS28-205ENST00000526204 TRA2BP62995 288 aaKnown RBP20.16■□□□□ 0.82
VPS28-205ENST00000526204 ZNF45Q02386 682 aa20.16■□□□□ 0.82
VPS28-205ENST00000526204 FPGSQ05932 587 aa20.16■□□□□ 0.82
VPS28-205ENST00000526204 CAMK1Q14012 370 aa20.16■□□□□ 0.82
VPS28-205ENST00000526204 TCTN3Q6NUS6 607 aa20.16■□□□□ 0.82
VPS28-205ENST00000526204 RAB42Q8N4Z0 105 aa20.16■□□□□ 0.82
VPS28-205ENST00000526204 PRAP1Q96NZ9 151 aa20.16■□□□□ 0.82
VPS28-205ENST00000526204 MENTQ9BUN1 341 aa20.16■□□□□ 0.82
VPS28-205ENST00000526204 ABCG4Q9H172 646 aa20.16■□□□□ 0.82
VPS28-205ENST00000526204 OR51E2Q9H255 320 aa20.16■□□□□ 0.82
VPS28-205ENST00000526204 TAS2R7Q9NYW3 318 aa20.16■□□□□ 0.82
VPS28-205ENST00000526204 NDOR1Q9UHB4 597 aa20.16■□□□□ 0.82
VPS28-205ENST00000526204 SLC6A14Q9UN76 642 aa20.16■□□□□ 0.82
VPS28-205ENST00000526204 FEZF1A0PJY2 475 aa20.15■□□□□ 0.82
VPS28-205ENST00000526204 OTOL1A6NHN0 477 aaPredicted RBP20.15■□□□□ 0.82
VPS28-205ENST00000526204 DSCR3O14972 297 aa20.15■□□□□ 0.82
VPS28-205ENST00000526204 KMOO15229 486 aa20.15■□□□□ 0.82
VPS28-205ENST00000526204 NDUFS4O43181 175 aa20.15■□□□□ 0.82
VPS28-205ENST00000526204 H1F0P07305 194 aaKnown RBP20.15■□□□□ 0.82
VPS28-205ENST00000526204 SLC35G4P0C7Q5 338 aa20.15■□□□□ 0.82
VPS28-205ENST00000526204 GRK5P34947 590 aa20.15■□□□□ 0.82
VPS28-205ENST00000526204 CCT3P49368 545 aaKnown RBP20.15■□□□□ 0.82
VPS28-205ENST00000526204 PRKCDQ05655 676 aa20.15■□□□□ 0.82
VPS28-205ENST00000526204 KHDRBS1Q07666 443 aaKnown RBP eCLIP20.15■□□□□ 0.82
VPS28-205ENST00000526204 DNASE1L3Q13609 305 aa20.15■□□□□ 0.82
VPS28-205ENST00000526204 FAM46CQ5VWP2 391 aa20.15■□□□□ 0.82
VPS28-205ENST00000526204 C19orf48Q6RUI8 117 aa20.15■□□□□ 0.82
VPS28-205ENST00000526204 SMG7Q92540 1137 aaKnown RBP20.15■□□□□ 0.82
VPS28-205ENST00000526204 RAB8BQ92930 207 aa20.15■□□□□ 0.82
VPS28-205ENST00000526204 EXOSC8Q96B26 276 aaKnown RBP20.15■□□□□ 0.82
VPS28-205ENST00000526204 MGLLQ99685 303 aa20.15■□□□□ 0.82
VPS28-205ENST00000526204 CDADC1Q9BWV3 514 aa20.15■□□□□ 0.82
VPS28-205ENST00000526204 SP140LQ9H930 580 aa20.15■□□□□ 0.82
VPS28-205ENST00000526204 LHX9Q9NQ69 397 aa20.15■□□□□ 0.82
VPS28-205ENST00000526204 ZSCAN32Q9NX65 697 aa20.15■□□□□ 0.82
VPS28-205ENST00000526204 TLR4O00206 839 aa20.15■□□□□ 0.82
VPS28-205ENST00000526204 PCCBP05166 539 aa20.15■□□□□ 0.82
VPS28-205ENST00000526204 ELAVL4P26378 380 aaKnown RBP20.15■□□□□ 0.82
VPS28-205ENST00000526204 TPRG1LQ5T0D9 272 aa20.15■□□□□ 0.82
VPS28-205ENST00000526204 CHCHD6Q9BRQ6 235 aa20.15■□□□□ 0.82
VPS28-205ENST00000526204 DDX31Q9H8H2 851 aaKnown RBP20.15■□□□□ 0.82
VPS28-205ENST00000526204 FZD3Q9NPG1 666 aa20.15■□□□□ 0.82
VPS28-205ENST00000526204 REV1Q9UBZ9 1251 aa20.15■□□□□ 0.82
VPS28-205ENST00000526204 ACSL5Q9ULC5 683 aa20.15■□□□□ 0.82
VPS28-205ENST00000526204 KIAA1549LQ6ZVL6 1849 aa20.15■□□□□ 0.82
VPS28-205ENST00000526204 GPR89AB7ZAQ6 455 aa20.14■□□□□ 0.81
VPS28-205ENST00000526204 OR1F1O43749 312 aa20.14■□□□□ 0.81
VPS28-205ENST00000526204 TMPRSS11DO60235 418 aa20.14■□□□□ 0.81
VPS28-205ENST00000526204 GPR89BP0CG08 455 aa20.14■□□□□ 0.81
VPS28-205ENST00000526204 SOX6P35712 828 aa20.14■□□□□ 0.81
VPS28-205ENST00000526204 UGT2B15P54855 530 aa20.14■□□□□ 0.81
VPS28-205ENST00000526204 CDC20Q12834 499 aa20.14■□□□□ 0.81
VPS28-205ENST00000526204 MED22Q15528 200 aa20.14■□□□□ 0.81
VPS28-205ENST00000526204 FAM78AQ5JUQ0 283 aa20.14■□□□□ 0.81
VPS28-205ENST00000526204 MEDAGQ5VYS4 303 aa20.14■□□□□ 0.81
VPS28-205ENST00000526204 SLX4IPQ5VYV7 408 aa20.14■□□□□ 0.81
VPS28-205ENST00000526204 SLC22A16Q86VW1 577 aa20.14■□□□□ 0.81
VPS28-205ENST00000526204 NLGN4XQ8N0W4 816 aa20.14■□□□□ 0.81
VPS28-205ENST00000526204 SLC25A19Q9HC21 320 aa20.14■□□□□ 0.81
VPS28-205ENST00000526204 CPNE5Q9HCH3 593 aa20.14■□□□□ 0.81
VPS28-205ENST00000526204 P2RX2Q9UBL9 471 aa20.14■□□□□ 0.81
VPS28-205ENST00000526204 SEC14L3Q9UDX4 400 aa20.14■□□□□ 0.81
VPS28-205ENST00000526204 ACAD8Q9UKU7 415 aa20.14■□□□□ 0.81
VPS28-205ENST00000526204 PAIP2BQ9ULR5 123 aaKnown RBP20.14■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms