RNA–Protein interactions for RNA: ENST00000515459.5

LMNA-223, Transcript of lamin A/C, human

TSL 5

Gene LMNA, Length 757 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LMNA-223	ENST00000515459	SPACA9	Q96E40	222 aa	Predicted RBP	14.5	□□□□□ -0.09
LMNA-223	ENST00000515459	PBK	Q96KB5	322 aa		14.5	□□□□□ -0.09
LMNA-223	ENST00000515459	CAPZA3	Q96KX2	299 aa		14.5	□□□□□ -0.09
LMNA-223	ENST00000515459	F2RL3	Q96RI0	385 aa		14.5	□□□□□ -0.09
LMNA-223	ENST00000515459	NAP1L3	Q99457	506 aa	Predicted RBP	14.5	□□□□□ -0.09
LMNA-223	ENST00000515459	SMR3A	Q99954	134 aa		14.5	□□□□□ -0.09
LMNA-223	ENST00000515459	MAPKAP1	Q9BPZ7	522 aa		14.5	□□□□□ -0.09
LMNA-223	ENST00000515459	ROGDI	Q9GZN7	287 aa		14.5	□□□□□ -0.09
LMNA-223	ENST00000515459	EHD1	Q9H4M9	534 aa		14.5	□□□□□ -0.09
LMNA-223	ENST00000515459	PLAC1	Q9HBJ0	212 aa		14.5	□□□□□ -0.09
LMNA-223	ENST00000515459	CNIH4	Q9P003	139 aa		14.5	□□□□□ -0.09
LMNA-223	ENST00000515459	CTNNAL1	Q9UBT7	734 aa		14.5	□□□□□ -0.09
LMNA-223	ENST00000515459	ZNF629	Q9UEG4	869 aa	Predicted RBP	14.5	□□□□□ -0.09
LMNA-223	ENST00000515459	SPACA6	W5XKT8	324 aa		14.5	□□□□□ -0.09
LMNA-223	ENST00000515459	NCF1B	A6NI72	391 aa	Predicted RBP	14.49	□□□□□ -0.09
LMNA-223	ENST00000515459	LRRC3C	A6NJW4	275 aa		14.49	□□□□□ -0.09
LMNA-223	ENST00000515459	NCF1C	A8MVU1	366 aa	Predicted RBP	14.49	□□□□□ -0.09
LMNA-223	ENST00000515459	CLGN	O14967	610 aa		14.49	□□□□□ -0.09
LMNA-223	ENST00000515459	IL2RA	P01589	272 aa		14.49	□□□□□ -0.09
LMNA-223	ENST00000515459	FREM3	P0C091	2139 aa		14.49	□□□□□ -0.09
LMNA-223	ENST00000515459	EPX	P11678	715 aa		14.49	□□□□□ -0.09
LMNA-223	ENST00000515459	NCF1	P14598	390 aa	Predicted RBP	14.49	□□□□□ -0.09
LMNA-223	ENST00000515459	ADSL	P30566	484 aa	Predicted RBP	14.49	□□□□□ -0.09
LMNA-223	ENST00000515459	TIMP3	P35625	211 aa		14.49	□□□□□ -0.09
LMNA-223	ENST00000515459	TRPC1	P48995	793 aa		14.49	□□□□□ -0.09
LMNA-223	ENST00000515459	FNTA	P49354	379 aa		14.49	□□□□□ -0.09
LMNA-223	ENST00000515459	ZNF460	Q14592	562 aa		14.49	□□□□□ -0.09
LMNA-223	ENST00000515459	TRMT10B	Q6PF06	316 aa	Known RBP	14.49	□□□□□ -0.09
LMNA-223	ENST00000515459	KIF18B	Q86Y91	864 aa		14.49	□□□□□ -0.09
LMNA-223	ENST00000515459	LACC1	Q8IV20	430 aa		14.49	□□□□□ -0.09
LMNA-223	ENST00000515459	C9orf40	Q8IXQ3	194 aa		14.49	□□□□□ -0.09
LMNA-223	ENST00000515459	DND1	Q8IYX4	353 aa	Known RBP	14.49	□□□□□ -0.09
LMNA-223	ENST00000515459	FAM13C	Q8NE31	585 aa		14.49	□□□□□ -0.09
LMNA-223	ENST00000515459	SRFBP1	Q8NEF9	429 aa	Known RBP	14.49	□□□□□ -0.09
LMNA-223	ENST00000515459	ANKRD9	Q96BM1	317 aa	Predicted RBP	14.49	□□□□□ -0.09
LMNA-223	ENST00000515459	CFAP36	Q96G28	342 aa		14.49	□□□□□ -0.09
LMNA-223	ENST00000515459	SENP5	Q96HI0	755 aa	Predicted RBP	14.49	□□□□□ -0.09
LMNA-223	ENST00000515459	JSRP1	Q96MG2	331 aa	Predicted RBP	14.49	□□□□□ -0.09
LMNA-223	ENST00000515459	DGAT2	Q96PD7	388 aa		14.49	□□□□□ -0.09
LMNA-223	ENST00000515459	TRMT1	Q9NXH9	659 aa	Known RBP	14.49	□□□□□ -0.09
LMNA-223	ENST00000515459	ZNF490	Q9ULM2	529 aa	Predicted RBP	14.49	□□□□□ -0.09
LMNA-223	ENST00000515459	VPS13C	Q709C8	3753 aa		14.49	□□□□□ -0.09
LMNA-223	ENST00000515459	NIN	Q8N4C6	2090 aa		14.49	□□□□□ -0.09
LMNA-223	ENST00000515459	C15orf38-AP3S2	A0A0A6YYH1	394 aa		14.48	□□□□□ -0.09
LMNA-223	ENST00000515459	FAM95C	A0A1B0GW59	222 aa		14.48	□□□□□ -0.09
LMNA-223	ENST00000515459	DNALI1	O14645	258 aa	Predicted RBP	14.48	□□□□□ -0.09
LMNA-223	ENST00000515459	DYRK3	O43781	588 aa		14.48	□□□□□ -0.09
LMNA-223	ENST00000515459	IGKV3-11	P04433	115 aa		14.48	□□□□□ -0.09
LMNA-223	ENST00000515459	INHBB	P09529	407 aa		14.48	□□□□□ -0.09
LMNA-223	ENST00000515459	HOXC12	P31275	282 aa		14.48	□□□□□ -0.09
LMNA-223	ENST00000515459	ELK3	P41970	407 aa		14.48	□□□□□ -0.09
LMNA-223	ENST00000515459	STT3A	P46977	705 aa		14.48	□□□□□ -0.09
LMNA-223	ENST00000515459	WNT3	P56703	355 aa		14.48	□□□□□ -0.09
LMNA-223	ENST00000515459	DUSP8	Q13202	625 aa		14.48	□□□□□ -0.09
LMNA-223	ENST00000515459	TGFBI	Q15582	683 aa		14.48	□□□□□ -0.09
LMNA-223	ENST00000515459	ACSF3	Q4G176	576 aa	Predicted RBP	14.48	□□□□□ -0.09
LMNA-223	ENST00000515459	HP1BP3	Q5SSJ5	553 aa	Predicted RBP	14.48	□□□□□ -0.09
LMNA-223	ENST00000515459	POMZP3	Q6PJE2	187 aa		14.48	□□□□□ -0.09
LMNA-223	ENST00000515459	LYPD8	Q6UX82	237 aa		14.48	□□□□□ -0.09
LMNA-223	ENST00000515459	ZNF793	Q6ZN11	406 aa		14.48	□□□□□ -0.09
LMNA-223	ENST00000515459	TAOK1	Q7L7X3	1001 aa		14.48	□□□□□ -0.09
LMNA-223	ENST00000515459	ACOT4	Q8N9L9	421 aa		14.48	□□□□□ -0.09
LMNA-223	ENST00000515459	ANKRD49	Q8WVL7	239 aa		14.48	□□□□□ -0.09
LMNA-223	ENST00000515459	PTCD3	Q96EY7	689 aa	Known RBP	14.48	□□□□□ -0.09
LMNA-223	ENST00000515459	RBM18	Q96H35	190 aa	Known RBP	14.48	□□□□□ -0.09
LMNA-223	ENST00000515459	ART5	Q96L15	291 aa		14.48	□□□□□ -0.09
LMNA-223	ENST00000515459	TBCD	Q9BTW9	1192 aa		14.48	□□□□□ -0.09
LMNA-223	ENST00000515459	CNOT10	Q9H9A5	744 aa	Known RBP	14.48	□□□□□ -0.09
LMNA-223	ENST00000515459	PROK2	Q9HC23	129 aa		14.48	□□□□□ -0.09
LMNA-223	ENST00000515459	NEUROD4	Q9HD90	331 aa		14.48	□□□□□ -0.09
LMNA-223	ENST00000515459	DNAJC11	Q9NVH1	559 aa		14.48	□□□□□ -0.09
LMNA-223	ENST00000515459	SDAD1	Q9NVU7	687 aa	Known RBP eCLIP	14.48	□□□□□ -0.09	6e-6	■■□□□ 12.1
LMNA-223	ENST00000515459	WWOX	Q9NZC7	414 aa		14.48	□□□□□ -0.09
LMNA-223	ENST00000515459	ASIC3	Q9UHC3	531 aa		14.48	□□□□□ -0.09
LMNA-223	ENST00000515459	CHCHD2	Q9Y6H1	151 aa	Predicted RBP	14.48	□□□□□ -0.09
LMNA-223	ENST00000515459	PGRMC1	O00264	195 aa	Known RBP	14.47	□□□□□ -0.09
LMNA-223	ENST00000515459	PRAMEF4	O60810	478 aa		14.47	□□□□□ -0.09
LMNA-223	ENST00000515459	GOSR1	O95249	250 aa		14.47	□□□□□ -0.09
LMNA-223	ENST00000515459	C1QA	P02745	245 aa		14.47	□□□□□ -0.09
LMNA-223	ENST00000515459	CPN2	P22792	545 aa		14.47	□□□□□ -0.09
LMNA-223	ENST00000515459	ATP5A1	P25705	553 aa	Known RBP	14.47	□□□□□ -0.09
LMNA-223	ENST00000515459	GDF1	P27539	372 aa		14.47	□□□□□ -0.09
LMNA-223	ENST00000515459	SERPINB3	P29508	390 aa		14.47	□□□□□ -0.09
LMNA-223	ENST00000515459	GGT5	P36269	586 aa		14.47	□□□□□ -0.09
LMNA-223	ENST00000515459	ZNF136	P52737	540 aa		14.47	□□□□□ -0.09
LMNA-223	ENST00000515459	TAS2R39	P59534	338 aa		14.47	□□□□□ -0.09
LMNA-223	ENST00000515459	IGLV3-21	P80748	117 aa	Predicted RBP	14.47	□□□□□ -0.09
LMNA-223	ENST00000515459	BIK	Q13323	160 aa		14.47	□□□□□ -0.09
LMNA-223	ENST00000515459	LAPTM5	Q13571	262 aa		14.47	□□□□□ -0.09
LMNA-223	ENST00000515459	DOC2A	Q14183	400 aa		14.47	□□□□□ -0.09
LMNA-223	ENST00000515459	SF3B4	Q15427	424 aa	Known RBP eCLIP	14.47	□□□□□ -0.09	1e-7	■■■■■ 28.9
LMNA-223	ENST00000515459	PRAMEF9	Q5VWM5	478 aa		14.47	□□□□□ -0.09
LMNA-223	ENST00000515459	CLEC9A	Q6UXN8	241 aa		14.47	□□□□□ -0.09
LMNA-223	ENST00000515459	UBE3D	Q7Z6J8	389 aa		14.47	□□□□□ -0.09
LMNA-223	ENST00000515459	ZC3HC1	Q86WB0	502 aa	Known RBP	14.47	□□□□□ -0.09
LMNA-223	ENST00000515459	OR4N5	Q8IXE1	308 aa		14.47	□□□□□ -0.09
LMNA-223	ENST00000515459	PM20D2	Q8IYS1	436 aa		14.47	□□□□□ -0.09
LMNA-223	ENST00000515459	PDIK1L	Q8N165	341 aa		14.47	□□□□□ -0.09
LMNA-223	ENST00000515459	TCAIM	Q8N3R3	496 aa		14.47	□□□□□ -0.09
LMNA-223	ENST00000515459	HSPBAP1	Q96EW2	488 aa		14.47	□□□□□ -0.09

Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms