RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 DNAJC18Q9H819 358 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 SLC28A3Q9HAS3 691 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 LY9Q9HBG7 655 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 APMAPQ9HDC9 416 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 BLOC1S4Q9NUP1 217 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 LIN7CQ9NUP9 197 aaKnown RBP3.45□□□□□ -1.86
USP53-205ENST00000509769 EVA1BQ9NVM1 165 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 CNOT2Q9NZN8 540 aaKnown RBP3.45□□□□□ -1.86
USP53-205ENST00000509769 ZNF629Q9UEG4 869 aaPredicted RBP3.45□□□□□ -1.86
USP53-205ENST00000509769 ING1Q9UK53 422 aaPredicted RBP3.45□□□□□ -1.86
USP53-205ENST00000509769 SCML1Q9UN30 329 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 RNF24Q9Y225 148 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 PCDHA10Q9Y5I2 948 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 SPIN1Q9Y657 262 aaPredicted RBP3.45□□□□□ -1.86
USP53-205ENST00000509769 CACNG2Q9Y698 323 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 DOT1LQ8TEK3 1739 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 A0A1W2PRB8 838 aa3.44□□□□□ -1.86
USP53-205ENST00000509769 TMEM218A2RU14 115 aa3.44□□□□□ -1.86
USP53-205ENST00000509769 MEIOCA2RUB1 952 aa3.44□□□□□ -1.86
USP53-205ENST00000509769 DUXAA6NLW8 204 aa3.44□□□□□ -1.86
USP53-205ENST00000509769 D6RAR5 112 aa3.44□□□□□ -1.86
USP53-205ENST00000509769 H3BMQ9 156 aa3.44□□□□□ -1.86
USP53-205ENST00000509769 CXCR6O00574 342 aa3.44□□□□□ -1.86
USP53-205ENST00000509769 GOSR2O14653 212 aa3.44□□□□□ -1.86
USP53-205ENST00000509769 HTRA2O43464 458 aaPredicted RBP3.44□□□□□ -1.86
USP53-205ENST00000509769 BNIP3LO60238 219 aa3.44□□□□□ -1.86
USP53-205ENST00000509769 TBX10O75333 385 aa3.44□□□□□ -1.86
USP53-205ENST00000509769 F2P00734 622 aa3.44□□□□□ -1.86
USP53-205ENST00000509769 PFKMP08237 780 aa3.44□□□□□ -1.86
USP53-205ENST00000509769 GIPP09681 153 aaPredicted RBP3.44□□□□□ -1.86
USP53-205ENST00000509769 CETPP11597 493 aa3.44□□□□□ -1.86
USP53-205ENST00000509769 DTYMKP23919 212 aa3.44□□□□□ -1.86
USP53-205ENST00000509769 CRHBPP24387 322 aa3.44□□□□□ -1.86
USP53-205ENST00000509769 GRPRP30550 384 aa3.44□□□□□ -1.86
USP53-205ENST00000509769 FOXN2P32314 431 aa3.44□□□□□ -1.86
USP53-205ENST00000509769 FRKP42685 505 aaPredicted RBP3.44□□□□□ -1.86
USP53-205ENST00000509769 CCR10P46092 362 aa3.44□□□□□ -1.86
USP53-205ENST00000509769 ARL4DP49703 201 aa3.44□□□□□ -1.86
USP53-205ENST00000509769 SLC35A2P78381 396 aa3.44□□□□□ -1.86
USP53-205ENST00000509769 ARHGAP8P85298 464 aa3.44□□□□□ -1.86
USP53-205ENST00000509769 DUSP4Q13115 394 aa3.44□□□□□ -1.86
USP53-205ENST00000509769 OPCMLQ14982 345 aa3.44□□□□□ -1.86
USP53-205ENST00000509769 PTPRRQ15256 657 aa3.44□□□□□ -1.86
USP53-205ENST00000509769 TBCEQ15813 527 aaPredicted RBP3.44□□□□□ -1.86
USP53-205ENST00000509769 C1QTNF12Q5T7M4 302 aa3.44□□□□□ -1.86
USP53-205ENST00000509769 OR2T5Q6IEZ7 315 aa3.44□□□□□ -1.86
USP53-205ENST00000509769 CYP20A1Q6UW02 462 aa3.44□□□□□ -1.86
USP53-205ENST00000509769 IL27RAQ6UWB1 636 aa3.44□□□□□ -1.86
USP53-205ENST00000509769 B3GNT9Q6UX72 402 aa3.44□□□□□ -1.86
USP53-205ENST00000509769 TMPRSS7Q7RTY8 843 aa3.44□□□□□ -1.86
USP53-205ENST00000509769 GPR155Q7Z3F1 870 aa3.44□□□□□ -1.86
USP53-205ENST00000509769 ERASQ7Z444 233 aa3.44□□□□□ -1.86
USP53-205ENST00000509769 PRSS42Q7Z5A4 293 aa3.44□□□□□ -1.86
USP53-205ENST00000509769 GPR142Q7Z601 462 aa3.44□□□□□ -1.86
USP53-205ENST00000509769 ACOT1Q86TX2 421 aa3.44□□□□□ -1.86
USP53-205ENST00000509769 ANGPTL5Q86XS5 388 aa3.44□□□□□ -1.86
USP53-205ENST00000509769 ZDHHC21Q8IVQ6 265 aa3.44□□□□□ -1.86
USP53-205ENST00000509769 LAS2Q8IYD9 372 aa3.44□□□□□ -1.86
USP53-205ENST00000509769 CHST4Q8NCG5 386 aa3.44□□□□□ -1.86
USP53-205ENST00000509769 OR2T29Q8NH02 315 aa3.44□□□□□ -1.86
USP53-205ENST00000509769 EDEM1Q92611 657 aa3.44□□□□□ -1.86
USP53-205ENST00000509769 ACDQ96AP0 544 aa3.44□□□□□ -1.86
USP53-205ENST00000509769 FOXRED1Q96CU9 486 aaPredicted RBP3.44□□□□□ -1.86
USP53-205ENST00000509769 CLIP3Q96DZ5 547 aa3.44□□□□□ -1.86
USP53-205ENST00000509769 SH3YL1Q96HL8 342 aaPredicted RBP3.44□□□□□ -1.86
USP53-205ENST00000509769 MAP6Q96JE9 813 aa3.44□□□□□ -1.86
USP53-205ENST00000509769 MCEEQ96PE7 176 aa3.44□□□□□ -1.86
USP53-205ENST00000509769 EDEM2Q9BV94 578 aa3.44□□□□□ -1.86
USP53-205ENST00000509769 YIPF2Q9BWQ6 316 aa3.44□□□□□ -1.86
USP53-205ENST00000509769 DPH1Q9BZG8 443 aa3.44□□□□□ -1.86
USP53-205ENST00000509769 TGIF2Q9GZN2 237 aa3.44□□□□□ -1.86
USP53-205ENST00000509769 ABCG5Q9H222 651 aa3.44□□□□□ -1.86
USP53-205ENST00000509769 SACM1LQ9NTJ5 587 aa3.44□□□□□ -1.86
USP53-205ENST00000509769 NOSIPQ9Y314 301 aaKnown RBP3.44□□□□□ -1.86
USP53-205ENST00000509769 IGSF9BQ9UPX0 1349 aa3.44□□□□□ -1.86
USP53-205ENST00000509769 A0A1W2PP64 1363 aa3.44□□□□□ -1.86
USP53-205ENST00000509769 RBBP6Q7Z6E9 1792 aaKnown RBP3.44□□□□□ -1.86
USP53-205ENST00000509769 MROH6A6NGR9 719 aa3.44□□□□□ -1.86
USP53-205ENST00000509769 OR2AG2A6NM03 316 aa3.44□□□□□ -1.86
USP53-205ENST00000509769 MEIS3P2A8K0S8 358 aa3.44□□□□□ -1.86
USP53-205ENST00000509769 FZD9O00144 591 aa3.44□□□□□ -1.86
USP53-205ENST00000509769 SMAD9O15198 467 aaKnown RBP3.44□□□□□ -1.86
USP53-205ENST00000509769 AKR7A2O43488 359 aa3.44□□□□□ -1.86
USP53-205ENST00000509769 CDRT1O95170 752 aa3.44□□□□□ -1.86
USP53-205ENST00000509769 DIRAS3O95661 229 aa3.44□□□□□ -1.86
USP53-205ENST00000509769 F7P08709 466 aaPredicted RBP3.44□□□□□ -1.86
USP53-205ENST00000509769 NR2F1P10589 423 aa3.44□□□□□ -1.86
USP53-205ENST00000509769 CSNK2A2P19784 350 aaPredicted RBP3.44□□□□□ -1.86
USP53-205ENST00000509769 AZGP1P25311 298 aaKnown RBP3.44□□□□□ -1.86
USP53-205ENST00000509769 LAP3P28838 519 aa3.44□□□□□ -1.86
USP53-205ENST00000509769 BDKRB2P30411 391 aa3.44□□□□□ -1.86
USP53-205ENST00000509769 KIR3DL1P43629 444 aa3.44□□□□□ -1.86
USP53-205ENST00000509769 BDKRB1P46663 353 aa3.44□□□□□ -1.86
USP53-205ENST00000509769 NUBP1P53384 320 aa3.44□□□□□ -1.86
USP53-205ENST00000509769 ACSM1Q08AH1 577 aa3.44□□□□□ -1.86
USP53-205ENST00000509769 FGFBP1Q14512 234 aa3.44□□□□□ -1.86
USP53-205ENST00000509769 GRM3Q14832 879 aa3.44□□□□□ -1.86
USP53-205ENST00000509769 PMVKQ15126 192 aa3.44□□□□□ -1.86
USP53-205ENST00000509769 MAPK14Q16539 360 aa3.44□□□□□ -1.86
USP53-205ENST00000509769 TAF9Q16594 264 aa3.44□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms