RNA–Protein interactions for RNA: ENST00000477528.5

HDAC6-220, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 4,832 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-220ENST00000477528 ASB1Q9Y576 335 aa13.97□□□□□ -0.17
HDAC6-220ENST00000477528 SH3D21A4FU49 640 aa13.96□□□□□ -0.17
HDAC6-220ENST00000477528 SEMA3DO95025 777 aa13.96□□□□□ -0.17
HDAC6-220ENST00000477528 IMPA1P29218 277 aa13.96□□□□□ -0.17
HDAC6-220ENST00000477528 CXCR4P61073 352 aa13.96□□□□□ -0.17
HDAC6-220ENST00000477528 MC1RQ01726 317 aa13.96□□□□□ -0.17
HDAC6-220ENST00000477528 SLC22A16Q86VW1 577 aa13.96□□□□□ -0.17
HDAC6-220ENST00000477528 PAPD5Q8NDF8 572 aaKnown RBP13.96□□□□□ -0.17
HDAC6-220ENST00000477528 ZNF248Q8NDW4 579 aa13.96□□□□□ -0.17
HDAC6-220ENST00000477528 C19orf43Q9BQ61 176 aa13.96□□□□□ -0.17
HDAC6-220ENST00000477528 TRPV5Q9NQA5 729 aa13.96□□□□□ -0.17
HDAC6-220ENST00000477528 CLDND1Q9NY35 253 aa13.96□□□□□ -0.17
HDAC6-220ENST00000477528 CLEC4EQ9ULY5 219 aa13.96□□□□□ -0.17
HDAC6-220ENST00000477528 PCDHGB5Q9Y5G0 923 aa13.96□□□□□ -0.17
HDAC6-220ENST00000477528 PCDHGB1Q9Y5G3 927 aa13.96□□□□□ -0.17
HDAC6-220ENST00000477528 ST14Q9Y5Y6 855 aa13.96□□□□□ -0.17
HDAC6-220ENST00000477528 IRAK3Q9Y616 596 aa13.96□□□□□ -0.17
HDAC6-220ENST00000477528 TRIP11Q15643 1979 aa13.96□□□□□ -0.17
HDAC6-220ENST00000477528 SOBPA7XYQ1 873 aa13.96□□□□□ -0.17
HDAC6-220ENST00000477528 CLCA1A8K7I4 914 aa13.96□□□□□ -0.17
HDAC6-220ENST00000477528 ERVFC1P60507 584 aa13.96□□□□□ -0.17
HDAC6-220ENST00000477528 CBX3Q13185 183 aa13.96□□□□□ -0.17
HDAC6-220ENST00000477528 RMI1Q9H9A7 625 aa13.96□□□□□ -0.17
HDAC6-220ENST00000477528 MKKSQ9NPJ1 570 aaPredicted RBP13.96□□□□□ -0.17
HDAC6-220ENST00000477528 SLC35C2Q9NQQ7 365 aa13.96□□□□□ -0.17
HDAC6-220ENST00000477528 SAGE1Q9NXZ1 904 aa13.96□□□□□ -0.17
HDAC6-220ENST00000477528 INTS6Q9UL03 887 aaKnown RBP13.96□□□□□ -0.17
HDAC6-220ENST00000477528 H3BNC9 293 aa13.96□□□□□ -0.18
HDAC6-220ENST00000477528 VILLO15195 856 aa13.96□□□□□ -0.18
HDAC6-220ENST00000477528 SMIM18P0DKX4 95 aa13.96□□□□□ -0.18
HDAC6-220ENST00000477528 TPTEP56180 551 aa13.96□□□□□ -0.18
HDAC6-220ENST00000477528 TAS2R38P59533 333 aa13.96□□□□□ -0.18
HDAC6-220ENST00000477528 PCDH1Q08174 1060 aa13.96□□□□□ -0.18
HDAC6-220ENST00000477528 ANGPT1Q15389 498 aa13.96□□□□□ -0.18
HDAC6-220ENST00000477528 FAM214AQ32MH5 1076 aa13.96□□□□□ -0.18
HDAC6-220ENST00000477528 FOXJ1Q92949 421 aa13.96□□□□□ -0.18
HDAC6-220ENST00000477528 MGLLQ99685 303 aa13.96□□□□□ -0.18
HDAC6-220ENST00000477528 COMMD3Q9UBI1 195 aa13.96□□□□□ -0.18
HDAC6-220ENST00000477528 FER1L6Q2WGJ9 1857 aa13.96□□□□□ -0.18
HDAC6-220ENST00000477528 C17orf113A0A1B0GUU1 675 aa13.96□□□□□ -0.18
HDAC6-220ENST00000477528 FOXE1O00358 373 aaPredicted RBP13.96□□□□□ -0.18
HDAC6-220ENST00000477528 SCN2BO60939 215 aa13.96□□□□□ -0.18
HDAC6-220ENST00000477528 BCAS1O75363 584 aaPredicted RBP13.96□□□□□ -0.18
HDAC6-220ENST00000477528 SLCO2B1O94956 709 aa13.96□□□□□ -0.18
HDAC6-220ENST00000477528 CH25HO95992 272 aa13.96□□□□□ -0.18
HDAC6-220ENST00000477528 TFPTP0C1Z6 253 aa13.96□□□□□ -0.18
HDAC6-220ENST00000477528 ALAS2P22557 587 aa13.96□□□□□ -0.18
HDAC6-220ENST00000477528 ZNF45Q02386 682 aa13.96□□□□□ -0.18
HDAC6-220ENST00000477528 MAD2L1BPQ15013 274 aaPredicted RBP13.96□□□□□ -0.18
HDAC6-220ENST00000477528 MINDY4Q4G0A6 757 aa13.96□□□□□ -0.18
HDAC6-220ENST00000477528 SLC27A4Q6P1M0 643 aa13.96□□□□□ -0.18
HDAC6-220ENST00000477528 KRT74Q7RTS7 529 aa13.96□□□□□ -0.18
HDAC6-220ENST00000477528 AMIGO1Q86WK6 493 aa13.96□□□□□ -0.18
HDAC6-220ENST00000477528 POMGNT2Q8NAT1 580 aa13.96□□□□□ -0.18
HDAC6-220ENST00000477528 OR52E4Q8NGH9 312 aa13.96□□□□□ -0.18
HDAC6-220ENST00000477528 SLCO4A1Q96BD0 722 aa13.96□□□□□ -0.18
HDAC6-220ENST00000477528 SLC17A9Q9BYT1 436 aa13.96□□□□□ -0.18
HDAC6-220ENST00000477528 PITHD1Q9GZP4 211 aaPredicted RBP13.96□□□□□ -0.18
HDAC6-220ENST00000477528 ING3Q9NXR8 418 aa13.96□□□□□ -0.18
HDAC6-220ENST00000477528 TAF4O00268 1085 aa13.95□□□□□ -0.18
HDAC6-220ENST00000477528 PSIP1O75475 530 aaKnown RBP13.95□□□□□ -0.18
HDAC6-220ENST00000477528 KLF8O95600 359 aaPredicted RBP13.95□□□□□ -0.18
HDAC6-220ENST00000477528 TSPAN12O95859 305 aa13.95□□□□□ -0.18
HDAC6-220ENST00000477528 SLC15A1P46059 708 aa13.95□□□□□ -0.18
HDAC6-220ENST00000477528 NDUFAF5Q5TEU4 345 aa13.95□□□□□ -0.18
HDAC6-220ENST00000477528 PLPP6Q8IY26 295 aa13.95□□□□□ -0.18
HDAC6-220ENST00000477528 KLHDC8AQ8IYD2 350 aa13.95□□□□□ -0.18
HDAC6-220ENST00000477528 OR8K5Q8NH50 307 aa13.95□□□□□ -0.18
HDAC6-220ENST00000477528 CD180Q99467 661 aa13.95□□□□□ -0.18
HDAC6-220ENST00000477528 MARK1Q9P0L2 795 aa13.95□□□□□ -0.18
HDAC6-220ENST00000477528 EXOSC1Q9Y3B2 195 aaKnown RBP13.95□□□□□ -0.18
HDAC6-220ENST00000477528 PLOD3O60568 738 aa13.95□□□□□ -0.18
HDAC6-220ENST00000477528 CDK4P11802 303 aa13.95□□□□□ -0.18
HDAC6-220ENST00000477528 POLR2CP19387 275 aaPredicted RBP13.95□□□□□ -0.18
HDAC6-220ENST00000477528 CDKN2CP42773 168 aa13.95□□□□□ -0.18
HDAC6-220ENST00000477528 RAB25P57735 213 aa13.95□□□□□ -0.18
HDAC6-220ENST00000477528 ZFP69Q49AA0 526 aa13.95□□□□□ -0.18
HDAC6-220ENST00000477528 SNAP47Q5SQN1 464 aa13.95□□□□□ -0.18
HDAC6-220ENST00000477528 LRRC17Q8N6Y2 441 aa13.95□□□□□ -0.18
HDAC6-220ENST00000477528 SLC30A2Q9BRI3 323 aa13.95□□□□□ -0.18
HDAC6-220ENST00000477528 GDE1Q9NZC3 331 aa13.95□□□□□ -0.18
HDAC6-220ENST00000477528 ARID2Q68CP9 1835 aa13.95□□□□□ -0.18
HDAC6-220ENST00000477528 LILRB3O75022 631 aa13.95□□□□□ -0.18
HDAC6-220ENST00000477528 HLA-DPB1P04440 258 aa13.95□□□□□ -0.18
HDAC6-220ENST00000477528 MMP12P39900 470 aa13.95□□□□□ -0.18
HDAC6-220ENST00000477528 PGDP52209 483 aa13.95□□□□□ -0.18
HDAC6-220ENST00000477528 PSMD4P55036 377 aaKnown RBP13.95□□□□□ -0.18
HDAC6-220ENST00000477528 IZUMO1Q8IYV9 350 aa13.95□□□□□ -0.18
HDAC6-220ENST00000477528 GPR83Q9NYM4 423 aa13.95□□□□□ -0.18
HDAC6-220ENST00000477528 ENPP5Q9UJA9 477 aa13.95□□□□□ -0.18
HDAC6-220ENST00000477528 FXYD1O00168 92 aa13.94□□□□□ -0.18
HDAC6-220ENST00000477528 TNFRSF21O75509 655 aa13.94□□□□□ -0.18
HDAC6-220ENST00000477528 CDRT1O95170 752 aa13.94□□□□□ -0.18
HDAC6-220ENST00000477528 DHFRP00374 187 aa13.94□□□□□ -0.18
HDAC6-220ENST00000477528 ACADLP28330 430 aa13.94□□□□□ -0.18
HDAC6-220ENST00000477528 GRK6P43250 576 aa13.94□□□□□ -0.18
HDAC6-220ENST00000477528 RPS15AP62244 130 aaKnown RBP13.94□□□□□ -0.18
HDAC6-220ENST00000477528 BNC1Q01954 994 aa13.94□□□□□ -0.18
HDAC6-220ENST00000477528 TMEM107Q6UX40 140 aa13.94□□□□□ -0.18
HDAC6-220ENST00000477528 ABHD11Q8NFV4 315 aa13.94□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms