RNA–Protein interactions for RNA: ENST00000476169.1

VPS13D-207, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 475 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-207ENST00000476169 CEBPDP49716 269 aaPredicted RBP3.8□□□□□ -1.8
VPS13D-207ENST00000476169 LBX1P52954 281 aa3.8□□□□□ -1.8
VPS13D-207ENST00000476169 MAZP56270 477 aaKnown RBP3.8□□□□□ -1.8
VPS13D-207ENST00000476169 HAND2P61296 217 aa3.8□□□□□ -1.8
VPS13D-207ENST00000476169 SP3Q02447 781 aa3.8□□□□□ -1.8
VPS13D-207ENST00000476169 GABPAQ06546 454 aa3.8□□□□□ -1.8
VPS13D-207ENST00000476169 FGL1Q08830 312 aa3.8□□□□□ -1.8
VPS13D-207ENST00000476169 PJVKQ0ZLH3 352 aa3.8□□□□□ -1.8
VPS13D-207ENST00000476169 ZNF155Q12901 538 aaPredicted RBP3.8□□□□□ -1.8
VPS13D-207ENST00000476169 SRSF5Q13243 272 aaKnown RBP3.8□□□□□ -1.8
VPS13D-207ENST00000476169 EXOSC2Q13868 293 aaKnown RBP3.8□□□□□ -1.8
VPS13D-207ENST00000476169 IDI1Q13907 227 aa3.8□□□□□ -1.8
VPS13D-207ENST00000476169 TWIST1Q15672 202 aa3.8□□□□□ -1.8
VPS13D-207ENST00000476169 EXOC3L2Q2M3D2 409 aa3.8□□□□□ -1.8
VPS13D-207ENST00000476169 ZNF776Q68DI1 518 aaPredicted RBP3.8□□□□□ -1.8
VPS13D-207ENST00000476169 TRNP1Q6NT89 227 aa3.8□□□□□ -1.8
VPS13D-207ENST00000476169 DHRS11Q6UWP2 260 aa3.8□□□□□ -1.8
VPS13D-207ENST00000476169 CEACAM20Q6UY09 585 aa3.8□□□□□ -1.8
VPS13D-207ENST00000476169 SYT10Q6XYQ8 523 aa3.8□□□□□ -1.8
VPS13D-207ENST00000476169 PAQR9Q6ZVX9 377 aa3.8□□□□□ -1.8
VPS13D-207ENST00000476169 CENPUQ71F23 418 aa3.8□□□□□ -1.8
VPS13D-207ENST00000476169 COX8CQ7Z4L0 72 aa3.8□□□□□ -1.8
VPS13D-207ENST00000476169 RCOR2Q8IZ40 523 aa3.8□□□□□ -1.8
VPS13D-207ENST00000476169 OR52K1Q8NGK4 314 aa3.8□□□□□ -1.8
VPS13D-207ENST00000476169 OR52J3Q8NH60 311 aa3.8□□□□□ -1.8
VPS13D-207ENST00000476169 PHLDA1Q8WV24 401 aaPredicted RBP3.8□□□□□ -1.8
VPS13D-207ENST00000476169 TMEM37Q8WXS4 190 aa3.8□□□□□ -1.8
VPS13D-207ENST00000476169 STARD8Q92502 1023 aa3.8□□□□□ -1.8
VPS13D-207ENST00000476169 RAPGEF5Q92565 580 aa3.8□□□□□ -1.8
VPS13D-207ENST00000476169 NT5C3BQ969T7 300 aa3.8□□□□□ -1.8
VPS13D-207ENST00000476169 HMCESQ96FZ2 354 aa3.8□□□□□ -1.8
VPS13D-207ENST00000476169 SCMH1Q96GD3 660 aa3.8□□□□□ -1.8
VPS13D-207ENST00000476169 SLC41A3Q96GZ6 507 aa3.8□□□□□ -1.8
VPS13D-207ENST00000476169 ABHD8Q96I13 439 aa3.8□□□□□ -1.8
VPS13D-207ENST00000476169 USP28Q96RU2 1077 aa3.8□□□□□ -1.8
VPS13D-207ENST00000476169 LRRCC1Q9C099 1032 aa3.8□□□□□ -1.8
VPS13D-207ENST00000476169 FN3KRPQ9HA64 309 aa3.8□□□□□ -1.8
VPS13D-207ENST00000476169 FANCEQ9HB96 536 aa3.8□□□□□ -1.8
VPS13D-207ENST00000476169 ZNF701Q9NV72 531 aaPredicted RBP3.8□□□□□ -1.8
VPS13D-207ENST00000476169 ZNF224Q9NZL3 707 aa3.8□□□□□ -1.8
VPS13D-207ENST00000476169 LHX3Q9UBR4 397 aa3.8□□□□□ -1.8
VPS13D-207ENST00000476169 DBF4Q9UBU7 674 aaPredicted RBP3.8□□□□□ -1.8
VPS13D-207ENST00000476169 DIMT1Q9UNQ2 313 aaKnown RBP3.8□□□□□ -1.8
VPS13D-207ENST00000476169 TTC3P53804 2025 aa3.8□□□□□ -1.8
VPS13D-207ENST00000476169 GAPVD1Q14C86 1478 aa3.79□□□□□ -1.8
VPS13D-207ENST00000476169 DNAJC9-AS1A6NH13 148 aa3.79□□□□□ -1.8
VPS13D-207ENST00000476169 A8MVM7 634 aa3.79□□□□□ -1.8
VPS13D-207ENST00000476169 LACTBL1A8MY62 500 aa3.79□□□□□ -1.8
VPS13D-207ENST00000476169 NPIPA2E9PIF3 369 aa3.79□□□□□ -1.8
VPS13D-207ENST00000476169 PPIAL4DF5H284 164 aa3.79□□□□□ -1.8
VPS13D-207ENST00000476169 WRBO00258 174 aa3.79□□□□□ -1.8
VPS13D-207ENST00000476169 FPGTO14772 594 aa3.79□□□□□ -1.8
VPS13D-207ENST00000476169 ECE2O60344 883 aa3.79□□□□□ -1.8
VPS13D-207ENST00000476169 JAK2O60674 1132 aa3.79□□□□□ -1.8
VPS13D-207ENST00000476169 DNAJB6O75190 326 aa3.79□□□□□ -1.8
VPS13D-207ENST00000476169 ECI2O75521 394 aa3.79□□□□□ -1.8
VPS13D-207ENST00000476169 TOMM40O96008 361 aa3.79□□□□□ -1.8
VPS13D-207ENST00000476169 MT-ND2P03891 347 aa3.79□□□□□ -1.8
VPS13D-207ENST00000476169 F7P08709 466 aaPredicted RBP3.79□□□□□ -1.8
VPS13D-207ENST00000476169 LINC00271P0C7V0 271 aa3.79□□□□□ -1.8
VPS13D-207ENST00000476169 GSTT2P0CG29 244 aa3.79□□□□□ -1.8
VPS13D-207ENST00000476169 GSTT2BP0CG30 244 aa3.79□□□□□ -1.8
VPS13D-207ENST00000476169 KRT3P12035 628 aa3.79□□□□□ -1.8
VPS13D-207ENST00000476169 ZNF44P15621 663 aa3.79□□□□□ -1.8
VPS13D-207ENST00000476169 UQCRC2P22695 453 aa3.79□□□□□ -1.8
VPS13D-207ENST00000476169 FCARP24071 287 aa3.79□□□□□ -1.8
VPS13D-207ENST00000476169 CTNNA2P26232 953 aa3.79□□□□□ -1.8
VPS13D-207ENST00000476169 RBMS1P29558 406 aaKnown RBP3.79□□□□□ -1.8
VPS13D-207ENST00000476169 USP8P40818 1118 aa3.79□□□□□ -1.8
VPS13D-207ENST00000476169 NPY2RP49146 381 aa3.79□□□□□ -1.8
VPS13D-207ENST00000476169 ACADVLP49748 655 aa3.79□□□□□ -1.8
VPS13D-207ENST00000476169 EEF1A1P68104 462 aaKnown RBP3.79□□□□□ -1.8
VPS13D-207ENST00000476169 PITX1P78337 314 aaPredicted RBP3.79□□□□□ -1.8
VPS13D-207ENST00000476169 SLC20A2Q08357 652 aa3.79□□□□□ -1.8
VPS13D-207ENST00000476169 NCBP1Q09161 790 aaKnown RBP3.79□□□□□ -1.8
VPS13D-207ENST00000476169 ZBTB17Q13105 803 aa3.79□□□□□ -1.8
VPS13D-207ENST00000476169 TRAF3Q13114 568 aa3.79□□□□□ -1.8
VPS13D-207ENST00000476169 SQLEQ14534 574 aa3.79□□□□□ -1.8
VPS13D-207ENST00000476169 SSX2Q16385 188 aa3.79□□□□□ -1.8
VPS13D-207ENST00000476169 CAMK4Q16566 473 aa3.79□□□□□ -1.8
VPS13D-207ENST00000476169 LRRC37A5PQ49AS3 106 aa3.79□□□□□ -1.8
VPS13D-207ENST00000476169 GPR33Q49SQ1 333 aa3.79□□□□□ -1.8
VPS13D-207ENST00000476169 FGD3Q5JSP0 725 aa3.79□□□□□ -1.8
VPS13D-207ENST00000476169 EEF1A1P5Q5VTE0 462 aa3.79□□□□□ -1.8
VPS13D-207ENST00000476169 IRAK1BP1Q5VVH5 260 aa3.79□□□□□ -1.8
VPS13D-207ENST00000476169 SEL1L3Q68CR1 1132 aa3.79□□□□□ -1.8
VPS13D-207ENST00000476169 OR4C11Q6IEV9 310 aa3.79□□□□□ -1.8
VPS13D-207ENST00000476169 ZSCAN25Q6NSZ9 544 aa3.79□□□□□ -1.8
VPS13D-207ENST00000476169 RHBDF2Q6PJF5 856 aa3.79□□□□□ -1.8
VPS13D-207ENST00000476169 ASB18Q6ZVZ8 466 aa3.79□□□□□ -1.8
VPS13D-207ENST00000476169 PIWIL4Q7Z3Z4 852 aaKnown RBP3.79□□□□□ -1.8
VPS13D-207ENST00000476169 P4HA3Q7Z4N8 544 aa3.79□□□□□ -1.8
VPS13D-207ENST00000476169 C5orf24Q7Z6I8 188 aa3.79□□□□□ -1.8
VPS13D-207ENST00000476169 LHFPL4Q7Z7J7 247 aa3.79□□□□□ -1.8
VPS13D-207ENST00000476169 PSTKQ8IV42 348 aaKnown RBP3.79□□□□□ -1.8
VPS13D-207ENST00000476169 ZC3H3Q8IXZ2 948 aaKnown RBP3.79□□□□□ -1.8
VPS13D-207ENST00000476169 DCP1BQ8IZD4 617 aaKnown RBP3.79□□□□□ -1.8
VPS13D-207ENST00000476169 PDCL2Q8N4E4 241 aa3.79□□□□□ -1.8
VPS13D-207ENST00000476169 OR13C3Q8NGS6 347 aa3.79□□□□□ -1.8
VPS13D-207ENST00000476169 SPATA22Q8NHS9 363 aa3.79□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms