RNA–Protein interactions for RNA: ENST00000474047.5

VAMP4-203, Transcript of vesicle associated membrane protein 4, humanhuman

TSL 1 (best)

Gene VAMP4, Length 1,738 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP4-203ENST00000474047 PLIN5Q00G26 463 aa13.27□□□□□ -0.29
VAMP4-203ENST00000474047 FOLH1Q04609 750 aa13.27□□□□□ -0.29
VAMP4-203ENST00000474047 CSTF3Q12996 717 aaKnown RBP13.27□□□□□ -0.29
VAMP4-203ENST00000474047 ELOAQ14241 798 aaKnown RBP13.27□□□□□ -0.29
VAMP4-203ENST00000474047 TCHHL1Q5QJ38 904 aaPredicted RBP13.27□□□□□ -0.29
VAMP4-203ENST00000474047 LIPMQ5VYY2 423 aa13.27□□□□□ -0.29
VAMP4-203ENST00000474047 COMMD6Q7Z4G1 85 aa13.27□□□□□ -0.29
VAMP4-203ENST00000474047 BANPQ8N9N5 519 aa13.27□□□□□ -0.29
VAMP4-203ENST00000474047 MORN4Q8NDC4 146 aa13.27□□□□□ -0.29
VAMP4-203ENST00000474047 SREK1Q8WXA9 508 aaKnown RBP13.27□□□□□ -0.29
VAMP4-203ENST00000474047 C5orf34Q96MH7 638 aa13.27□□□□□ -0.29
VAMP4-203ENST00000474047 COPS7AQ9UBW8 275 aa13.27□□□□□ -0.29
VAMP4-203ENST00000474047 TIMM22Q9Y584 194 aa13.27□□□□□ -0.29
VAMP4-203ENST00000474047 CLDN16Q9Y5I7 305 aa13.27□□□□□ -0.29
VAMP4-203ENST00000474047 GCN1Q92616 2671 aaKnown RBP13.26□□□□□ -0.29
VAMP4-203ENST00000474047 TRIM13O60858 407 aa13.26□□□□□ -0.29
VAMP4-203ENST00000474047 PRKRAO75569 313 aaKnown RBP13.26□□□□□ -0.29
VAMP4-203ENST00000474047 GPR75O95800 540 aa13.26□□□□□ -0.29
VAMP4-203ENST00000474047 CD46P15529 392 aa13.26□□□□□ -0.29
VAMP4-203ENST00000474047 PIK3R1P27986 724 aa13.26□□□□□ -0.29
VAMP4-203ENST00000474047 CD96P40200 585 aa13.26□□□□□ -0.29
VAMP4-203ENST00000474047 STT3AP46977 705 aa13.26□□□□□ -0.29
VAMP4-203ENST00000474047 TUBA3CQ13748 450 aa13.26□□□□□ -0.29
VAMP4-203ENST00000474047 OR1C1Q15619 314 aa13.26□□□□□ -0.29
VAMP4-203ENST00000474047 OR52E8Q6IFG1 317 aa13.26□□□□□ -0.29
VAMP4-203ENST00000474047 MRM1Q6IN84 353 aaKnown RBP13.26□□□□□ -0.29
VAMP4-203ENST00000474047 TUBA3EQ6PEY2 450 aa13.26□□□□□ -0.29
VAMP4-203ENST00000474047 C10orf107Q8IVU9 208 aa13.26□□□□□ -0.29
VAMP4-203ENST00000474047 GBP7Q8N8V2 638 aaPredicted RBP13.26□□□□□ -0.29
VAMP4-203ENST00000474047 APCDD1LQ8NCL9 501 aa13.26□□□□□ -0.29
VAMP4-203ENST00000474047 AGAP11Q8TF27 550 aa13.26□□□□□ -0.29
VAMP4-203ENST00000474047 FAM111AQ96PZ2 611 aa13.26□□□□□ -0.29
VAMP4-203ENST00000474047 PELOQ9BRX2 385 aaKnown RBP13.26□□□□□ -0.29
VAMP4-203ENST00000474047 TMEM109Q9BVC6 243 aa13.26□□□□□ -0.29
VAMP4-203ENST00000474047 MKS1Q9NXB0 559 aa13.26□□□□□ -0.29
VAMP4-203ENST00000474047 CPAMD8Q8IZJ3 1885 aa13.26□□□□□ -0.29
VAMP4-203ENST00000474047 MAN1A2O60476 641 aa13.25□□□□□ -0.29
VAMP4-203ENST00000474047 ERLIN1O75477 346 aa13.25□□□□□ -0.29
VAMP4-203ENST00000474047 AIFM1O95831 613 aa13.25□□□□□ -0.29
VAMP4-203ENST00000474047 ALOX15P16050 662 aaPredicted RBP13.25□□□□□ -0.29
VAMP4-203ENST00000474047 GNLYP22749 145 aa13.25□□□□□ -0.29
VAMP4-203ENST00000474047 TPP2P29144 1249 aaPredicted RBP13.25□□□□□ -0.29
VAMP4-203ENST00000474047 DEKP35659 375 aaKnown RBP13.25□□□□□ -0.29
VAMP4-203ENST00000474047 MLF1P58340 268 aa13.25□□□□□ -0.29
VAMP4-203ENST00000474047 BTKQ06187 659 aa13.25□□□□□ -0.29
VAMP4-203ENST00000474047 IMPG1Q17R60 797 aa13.25□□□□□ -0.29
VAMP4-203ENST00000474047 ZNF766Q5HY98 468 aa13.25□□□□□ -0.29
VAMP4-203ENST00000474047 SPDYAQ5MJ70 313 aa13.25□□□□□ -0.29
VAMP4-203ENST00000474047 RPUSD3Q6P087 351 aaKnown RBP13.25□□□□□ -0.29
VAMP4-203ENST00000474047 SCIMPQ6UWF3 145 aa13.25□□□□□ -0.29
VAMP4-203ENST00000474047 HSDL2Q6YN16 418 aa13.25□□□□□ -0.29
VAMP4-203ENST00000474047 FRMD7Q6ZUT3 714 aa13.25□□□□□ -0.29
VAMP4-203ENST00000474047 TMEM156Q8N614 296 aa13.25□□□□□ -0.29
VAMP4-203ENST00000474047 C1orf52Q8N6N3 182 aaKnown RBP13.25□□□□□ -0.29
VAMP4-203ENST00000474047 GRHL3Q8TE85 626 aa13.25□□□□□ -0.29
VAMP4-203ENST00000474047 PTPMT1Q8WUK0 201 aaPredicted RBP13.25□□□□□ -0.29
VAMP4-203ENST00000474047 PPWD1Q96BP3 646 aaKnown RBP13.25□□□□□ -0.29
VAMP4-203ENST00000474047 ART5Q96L15 291 aa13.25□□□□□ -0.29
VAMP4-203ENST00000474047 KCNA7Q96RP8 456 aa13.25□□□□□ -0.29
VAMP4-203ENST00000474047 NPAS2Q99743 824 aa13.25□□□□□ -0.29
VAMP4-203ENST00000474047 SHCBP1LQ9BZQ2 653 aa13.25□□□□□ -0.29
VAMP4-203ENST00000474047 KLHL1Q9NR64 748 aa13.25□□□□□ -0.29
VAMP4-203ENST00000474047 LRFN1Q9P244 771 aa13.25□□□□□ -0.29
VAMP4-203ENST00000474047 PPIEQ9UNP9 301 aaKnown RBP13.25□□□□□ -0.29
VAMP4-203ENST00000474047 HELZ2Q9BYK8 2649 aaKnown RBP13.25□□□□□ -0.29
VAMP4-203ENST00000474047 GNG14A0A1W2PPG7 69 aa13.25□□□□□ -0.29
VAMP4-203ENST00000474047 RASAL1O95294 804 aa13.25□□□□□ -0.29
VAMP4-203ENST00000474047 CYB561P49447 251 aa13.25□□□□□ -0.29
VAMP4-203ENST00000474047 ACSM2AQ08AH3 577 aa13.25□□□□□ -0.29
VAMP4-203ENST00000474047 NR6A1Q15406 480 aa13.25□□□□□ -0.29
VAMP4-203ENST00000474047 NDUFAF5Q5TEU4 345 aa13.25□□□□□ -0.29
VAMP4-203ENST00000474047 C6orf163Q5TEZ5 329 aa13.25□□□□□ -0.29
VAMP4-203ENST00000474047 ACSM2BQ68CK6 577 aa13.25□□□□□ -0.29
VAMP4-203ENST00000474047 SPINK14Q6IE38 97 aa13.25□□□□□ -0.29
VAMP4-203ENST00000474047 BCORP1Q8N888 145 aa13.25□□□□□ -0.29
VAMP4-203ENST00000474047 OR4K14Q8NGD5 310 aa13.25□□□□□ -0.29
VAMP4-203ENST00000474047 SLC2A12Q8TD20 617 aa13.25□□□□□ -0.29
VAMP4-203ENST00000474047 TCP10LQ8TDR4 215 aa13.25□□□□□ -0.29
VAMP4-203ENST00000474047 TMEM125Q96AQ2 219 aa13.25□□□□□ -0.29
VAMP4-203ENST00000474047 FAIM2Q9BWQ8 316 aa13.25□□□□□ -0.29
VAMP4-203ENST00000474047 SENP1Q9P0U3 644 aa13.25□□□□□ -0.29
VAMP4-203ENST00000474047 PSME2Q9UL46 239 aa13.25□□□□□ -0.29
VAMP4-203ENST00000474047 NBASA2RRP1 2371 aa13.25□□□□□ -0.29
VAMP4-203ENST00000474047 TCP11X1B4DZS4 312 aa13.24□□□□□ -0.29
VAMP4-203ENST00000474047 CDK2AP1O14519 115 aa13.24□□□□□ -0.29
VAMP4-203ENST00000474047 UBFD1O14562 309 aaKnown RBP13.24□□□□□ -0.29
VAMP4-203ENST00000474047 PGRMC2O15173 223 aa13.24□□□□□ -0.29
VAMP4-203ENST00000474047 ZIC2O95409 532 aaPredicted RBP13.24□□□□□ -0.29
VAMP4-203ENST00000474047 ALDH9A1P49189 494 aa13.24□□□□□ -0.29
VAMP4-203ENST00000474047 HTR6P50406 440 aa13.24□□□□□ -0.29
VAMP4-203ENST00000474047 IGLV3-21P80748 117 aaPredicted RBP13.24□□□□□ -0.29
VAMP4-203ENST00000474047 ZNF844Q08AG5 666 aa13.24□□□□□ -0.29
VAMP4-203ENST00000474047 GALNT1Q10472 559 aaPredicted RBP13.24□□□□□ -0.29
VAMP4-203ENST00000474047 TBL3Q12788 808 aaKnown RBP13.24□□□□□ -0.29
VAMP4-203ENST00000474047 PCLAFQ15004 111 aa13.24□□□□□ -0.29
VAMP4-203ENST00000474047 INAQ16352 499 aa13.24□□□□□ -0.29
VAMP4-203ENST00000474047 SPIN4Q56A73 249 aa13.24□□□□□ -0.29
VAMP4-203ENST00000474047 CEP85LQ5SZL2 805 aa13.24□□□□□ -0.29
VAMP4-203ENST00000474047 FAM219BQ5XKK7 198 aa13.24□□□□□ -0.29
VAMP4-203ENST00000474047 CROCCP2Q86T23 111 aa13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms