RNA–Protein interactions for RNA: ENST00000465461.6

CUX1-207, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 502 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-207ENST00000465461 PTPMT1Q8WUK0 201 aaPredicted RBP10.9□□□□□ -0.66
CUX1-207ENST00000465461 TWIST2Q8WVJ9 160 aa10.9□□□□□ -0.66
CUX1-207ENST00000465461 PPP1R36Q96LQ0 422 aa10.9□□□□□ -0.66
CUX1-207ENST00000465461 AGAP4Q96P64 663 aa10.9□□□□□ -0.66
CUX1-207ENST00000465461 NPAS2Q99743 824 aa10.9□□□□□ -0.66
CUX1-207ENST00000465461 TRMOQ9BU70 441 aa10.9□□□□□ -0.66
CUX1-207ENST00000465461 EML4Q9HC35 981 aaKnown RBP10.9□□□□□ -0.66
CUX1-207ENST00000465461 NMRK1Q9NWW6 199 aa10.9□□□□□ -0.66
CUX1-207ENST00000465461 MS4A12Q9NXJ0 267 aa10.9□□□□□ -0.66
CUX1-207ENST00000465461 HEY2Q9UBP5 337 aa10.9□□□□□ -0.66
CUX1-207ENST00000465461 G3BP2Q9UN86 482 aaKnown RBP10.9□□□□□ -0.66
CUX1-207ENST00000465461 ZNF451Q9Y4E5 1061 aa10.9□□□□□ -0.66
CUX1-207ENST00000465461 GNG14A0A1W2PPG7 69 aa10.89□□□□□ -0.67
CUX1-207ENST00000465461 C17orf105B2RV13 164 aa10.89□□□□□ -0.67
CUX1-207ENST00000465461 H3BQF6 201 aa10.89□□□□□ -0.67
CUX1-207ENST00000465461 PYCARD-AS1I3L0S3 204 aa10.89□□□□□ -0.67
CUX1-207ENST00000465461 HRKO00198 91 aa10.89□□□□□ -0.67
CUX1-207ENST00000465461 PIP5K1BO14986 540 aa10.89□□□□□ -0.67
CUX1-207ENST00000465461 BIRC5O15392 142 aa10.89□□□□□ -0.67
CUX1-207ENST00000465461 PRKNO60260 465 aaPredicted RBP10.89□□□□□ -0.67
CUX1-207ENST00000465461 SKAP2O75563 359 aaPredicted RBP10.89□□□□□ -0.67
CUX1-207ENST00000465461 SERPINE1P05121 402 aa10.89□□□□□ -0.67
CUX1-207ENST00000465461 FGF4P08620 206 aa10.89□□□□□ -0.67
CUX1-207ENST00000465461 IL3P08700 152 aa10.89□□□□□ -0.67
CUX1-207ENST00000465461 ICAM2P13598 275 aa10.89□□□□□ -0.67
CUX1-207ENST00000465461 ALDH9A1P49189 494 aa10.89□□□□□ -0.67
CUX1-207ENST00000465461 TAS2R50P59544 299 aa10.89□□□□□ -0.67
CUX1-207ENST00000465461 ABCE1P61221 599 aaKnown RBP10.89□□□□□ -0.67
CUX1-207ENST00000465461 ACSM2AQ08AH3 577 aa10.89□□□□□ -0.67
CUX1-207ENST00000465461 EXT1Q16394 746 aa10.89□□□□□ -0.67
CUX1-207ENST00000465461 ACSM2BQ68CK6 577 aa10.89□□□□□ -0.67
CUX1-207ENST00000465461 ISLR2Q6UXK2 745 aa10.89□□□□□ -0.67
CUX1-207ENST00000465461 CRLF3Q8IUI8 442 aa10.89□□□□□ -0.67
CUX1-207ENST00000465461 ZNF781Q8N8C0 355 aa10.89□□□□□ -0.67
CUX1-207ENST00000465461 CDC26Q8NHZ8 85 aa10.89□□□□□ -0.67
CUX1-207ENST00000465461 DNAJB14Q8TBM8 379 aa10.89□□□□□ -0.67
CUX1-207ENST00000465461 ELP5Q8TE02 316 aa10.89□□□□□ -0.67
CUX1-207ENST00000465461 C16orf78Q8WTQ4 265 aa10.89□□□□□ -0.67
CUX1-207ENST00000465461 THAP3Q8WTV1 239 aaPredicted RBP10.89□□□□□ -0.67
CUX1-207ENST00000465461 TANKQ92844 425 aa10.89□□□□□ -0.67
CUX1-207ENST00000465461 NCLNQ969V3 563 aa10.89□□□□□ -0.67
CUX1-207ENST00000465461 ATP6V1G3Q96LB4 118 aa10.89□□□□□ -0.67
CUX1-207ENST00000465461 C3orf30Q96M34 536 aa10.89□□□□□ -0.67
CUX1-207ENST00000465461 SORT1Q99523 831 aa10.89□□□□□ -0.67
CUX1-207ENST00000465461 LIN28AQ9H9Z2 209 aaKnown RBP10.89□□□□□ -0.67
CUX1-207ENST00000465461 MMP25Q9NPA2 562 aa10.89□□□□□ -0.67
CUX1-207ENST00000465461 ADAP2Q9NPF8 381 aa10.89□□□□□ -0.67
CUX1-207ENST00000465461 ZNF446Q9NWS9 450 aa10.89□□□□□ -0.67
CUX1-207ENST00000465461 VTI1BQ9UEU0 232 aa10.89□□□□□ -0.67
CUX1-207ENST00000465461 MCM8Q9UJA3 840 aa10.89□□□□□ -0.67
CUX1-207ENST00000465461 ZNF223Q9UK11 482 aaPredicted RBP10.89□□□□□ -0.67
CUX1-207ENST00000465461 PCDHA9Q9Y5H5 950 aa10.89□□□□□ -0.67
CUX1-207ENST00000465461 FAM208BQ5VWN6 2430 aa10.88□□□□□ -0.67
CUX1-207ENST00000465461 UQCRHLA0A096LP55 91 aa10.88□□□□□ -0.67
CUX1-207ENST00000465461 TRBV11-1A0A0K0K1C0 115 aa10.88□□□□□ -0.67
CUX1-207ENST00000465461 ATP6AP2A0A1C7CYW4 349 aa10.88□□□□□ -0.67
CUX1-207ENST00000465461 B8ZZF3 427 aa10.88□□□□□ -0.67
CUX1-207ENST00000465461 SLC28A1O00337 649 aa10.88□□□□□ -0.67
CUX1-207ENST00000465461 SEC22BO75396 215 aa10.88□□□□□ -0.67
CUX1-207ENST00000465461 ERAL1O75616 437 aaKnown RBP10.88□□□□□ -0.67
CUX1-207ENST00000465461 ATP6AP2O75787 350 aa10.88□□□□□ -0.67
CUX1-207ENST00000465461 GPR75O95800 540 aa10.88□□□□□ -0.67
CUX1-207ENST00000465461 JUNP05412 331 aaKnown RBP10.88□□□□□ -0.67
CUX1-207ENST00000465461 TIA1P31483 386 aaKnown RBP eCLIP10.88□□□□□ -0.67
CUX1-207ENST00000465461 SOX11P35716 441 aa10.88□□□□□ -0.67
CUX1-207ENST00000465461 FEN1P39748 380 aaKnown RBP10.88□□□□□ -0.67
CUX1-207ENST00000465461 STT3AP46977 705 aa10.88□□□□□ -0.67
CUX1-207ENST00000465461 SLC1A6P48664 564 aa10.88□□□□□ -0.67
CUX1-207ENST00000465461 GPR143P51810 404 aa10.88□□□□□ -0.67
CUX1-207ENST00000465461 IGLV3-21P80748 117 aaPredicted RBP10.88□□□□□ -0.67
CUX1-207ENST00000465461 DUSP2Q05923 314 aa10.88□□□□□ -0.67
CUX1-207ENST00000465461 ZNF33BQ06732 778 aa10.88□□□□□ -0.67
CUX1-207ENST00000465461 BST1Q10588 318 aa10.88□□□□□ -0.67
CUX1-207ENST00000465461 KLRB1Q12918 225 aa10.88□□□□□ -0.67
CUX1-207ENST00000465461 STX3Q13277 289 aa10.88□□□□□ -0.67
CUX1-207ENST00000465461 KIAA0040Q15053 153 aa10.88□□□□□ -0.67
CUX1-207ENST00000465461 ELAVL1Q15717 326 aaKnown RBP10.88□□□□□ -0.67
CUX1-207ENST00000465461 PRSS53Q2L4Q9 553 aa10.88□□□□□ -0.67
CUX1-207ENST00000465461 GALNTL6Q49A17 601 aa10.88□□□□□ -0.67
CUX1-207ENST00000465461 SPIN4Q56A73 249 aa10.88□□□□□ -0.67
CUX1-207ENST00000465461 CRB2Q5IJ48 1285 aa10.88□□□□□ -0.67
CUX1-207ENST00000465461 C16orf47Q6ZP98 133 aaPredicted RBP10.88□□□□□ -0.67
CUX1-207ENST00000465461 PRICKLE2Q7Z3G6 844 aa10.88□□□□□ -0.67
CUX1-207ENST00000465461 TEX19Q8NA77 164 aa10.88□□□□□ -0.67
CUX1-207ENST00000465461 APCDD1LQ8NCL9 501 aa10.88□□□□□ -0.67
CUX1-207ENST00000465461 B3GNT7Q8NFL0 401 aa10.88□□□□□ -0.67
CUX1-207ENST00000465461 C11orf24Q96F05 449 aaPredicted RBP10.88□□□□□ -0.67
CUX1-207ENST00000465461 DGAT2Q96PD7 388 aa10.88□□□□□ -0.67
CUX1-207ENST00000465461 SH3GL2Q99962 352 aa10.88□□□□□ -0.67
CUX1-207ENST00000465461 OR8D2Q9GZM6 311 aa10.88□□□□□ -0.67
CUX1-207ENST00000465461 PIEZO2Q9H5I5 2752 aa10.88□□□□□ -0.67
CUX1-207ENST00000465461 CDCP1Q9H5V8 836 aa10.88□□□□□ -0.67
CUX1-207ENST00000465461 WDR41Q9HAD4 459 aa10.88□□□□□ -0.67
CUX1-207ENST00000465461 LRTM1Q9HBL6 345 aa10.88□□□□□ -0.67
CUX1-207ENST00000465461 PNPOQ9NVS9 261 aa10.88□□□□□ -0.67
CUX1-207ENST00000465461 ANKRD10Q9NXR5 420 aa10.88□□□□□ -0.67
CUX1-207ENST00000465461 NKIRAS1Q9NYS0 192 aa10.88□□□□□ -0.67
CUX1-207ENST00000465461 STMN3Q9NZ72 180 aa10.88□□□□□ -0.67
CUX1-207ENST00000465461 CES1P1Q9UKY3 287 aa10.88□□□□□ -0.67
CUX1-207ENST00000465461 DLGAP4Q9Y2H0 992 aa10.88□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms