RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 TRIM69Q86WT6 500 aa11.16□□□□□ -0.62
CPSF3-202ENST00000460593 DACT3Q96B18 629 aaPredicted RBP11.16□□□□□ -0.62
CPSF3-202ENST00000460593 FAM120CQ9NX05 1096 aaKnown RBP11.16□□□□□ -0.62
CPSF3-202ENST00000460593 TMEM161AQ9NX61 479 aa11.16□□□□□ -0.62
CPSF3-202ENST00000460593 CKAP5Q14008 2032 aa11.16□□□□□ -0.62
CPSF3-202ENST00000460593 NLRC5Q86WI3 1866 aa11.16□□□□□ -0.62
CPSF3-202ENST00000460593 SH3D21A4FU49 640 aa11.16□□□□□ -0.62
CPSF3-202ENST00000460593 H3BNC9 293 aa11.16□□□□□ -0.62
CPSF3-202ENST00000460593 KDELR3O43731 214 aa11.16□□□□□ -0.62
CPSF3-202ENST00000460593 CHP2O43745 196 aa11.16□□□□□ -0.62
CPSF3-202ENST00000460593 ORC5O43913 435 aa11.16□□□□□ -0.62
CPSF3-202ENST00000460593 LZTS3O60299 673 aaPredicted RBP11.16□□□□□ -0.62
CPSF3-202ENST00000460593 BPIP17213 487 aa11.16□□□□□ -0.62
CPSF3-202ENST00000460593 STK19P49842 368 aaPredicted RBP11.16□□□□□ -0.62
CPSF3-202ENST00000460593 RAE1P78406 368 aaKnown RBP11.16□□□□□ -0.62
CPSF3-202ENST00000460593 DOC2AQ14183 400 aa11.16□□□□□ -0.62
CPSF3-202ENST00000460593 PUM1Q14671 1186 aaKnown RBP eCLIP11.16□□□□□ -0.62
CPSF3-202ENST00000460593 SUZ12Q15022 739 aaKnown RBP11.16□□□□□ -0.62
CPSF3-202ENST00000460593 KLHL22Q53GT1 634 aa11.16□□□□□ -0.62
CPSF3-202ENST00000460593 BRAT1Q6PJG6 821 aa11.16□□□□□ -0.62
CPSF3-202ENST00000460593 ZNF730Q6ZMV8 503 aa11.16□□□□□ -0.62
CPSF3-202ENST00000460593 DEF8Q6ZN54 512 aa11.16□□□□□ -0.62
CPSF3-202ENST00000460593 GPR142Q7Z601 462 aa11.16□□□□□ -0.62
CPSF3-202ENST00000460593 SLC30A8Q8IWU4 369 aa11.16□□□□□ -0.62
CPSF3-202ENST00000460593 OR52I1Q8NGK6 324 aa11.16□□□□□ -0.62
CPSF3-202ENST00000460593 MED8Q96G25 268 aa11.16□□□□□ -0.62
CPSF3-202ENST00000460593 TRAF4Q9BUZ4 470 aaPredicted RBP11.16□□□□□ -0.62
CPSF3-202ENST00000460593 TMEM245Q9H330 911 aa11.16□□□□□ -0.62
CPSF3-202ENST00000460593 ZFP64Q9NPA5 681 aa11.16□□□□□ -0.62
CPSF3-202ENST00000460593 PAK6Q9NQU5 681 aaPredicted RBP11.16□□□□□ -0.62
CPSF3-202ENST00000460593 VPS29Q9UBQ0 182 aa11.16□□□□□ -0.62
CPSF3-202ENST00000460593 ELF5Q9UKW6 265 aaPredicted RBP11.16□□□□□ -0.62
CPSF3-202ENST00000460593 CD8B2A6NJW9 211 aa11.15□□□□□ -0.62
CPSF3-202ENST00000460593 LALBAP00709 142 aa11.15□□□□□ -0.62
CPSF3-202ENST00000460593 IL1AP01583 271 aa11.15□□□□□ -0.62
CPSF3-202ENST00000460593 CD8BP10966 210 aa11.15□□□□□ -0.62
CPSF3-202ENST00000460593 PRKACAP17612 351 aa11.15□□□□□ -0.62
CPSF3-202ENST00000460593 ACRV1P26436 265 aa11.15□□□□□ -0.62
CPSF3-202ENST00000460593 RHOAP61586 193 aa11.15□□□□□ -0.62
CPSF3-202ENST00000460593 KHDRBS1Q07666 443 aaKnown RBP eCLIP11.15□□□□□ -0.62
CPSF3-202ENST00000460593 C1DQ13901 141 aaKnown RBP11.15□□□□□ -0.62
CPSF3-202ENST00000460593 AANATQ16613 207 aa11.15□□□□□ -0.62
CPSF3-202ENST00000460593 CASP12Q6UXS9 341 aa11.15□□□□□ -0.62
CPSF3-202ENST00000460593 TECPR1Q7Z6L1 1165 aa11.15□□□□□ -0.62
CPSF3-202ENST00000460593 LHFPL3Q86UP9 236 aa11.15□□□□□ -0.62
CPSF3-202ENST00000460593 CPA6Q8N4T0 437 aa11.15□□□□□ -0.62
CPSF3-202ENST00000460593 ZNF655Q8N720 491 aaPredicted RBP11.15□□□□□ -0.62
CPSF3-202ENST00000460593 OR8J2Q8NGG1 315 aa11.15□□□□□ -0.62
CPSF3-202ENST00000460593 CSGALNACT1Q8TDX6 532 aa11.15□□□□□ -0.62
CPSF3-202ENST00000460593 UBTD2Q8WUN7 234 aa11.15□□□□□ -0.62
CPSF3-202ENST00000460593 DNAJA4Q8WW22 397 aaPredicted RBP11.15□□□□□ -0.62
CPSF3-202ENST00000460593 HYLS1Q96M11 299 aa11.15□□□□□ -0.62
CPSF3-202ENST00000460593 MAPKAP1Q9BPZ7 522 aa11.15□□□□□ -0.62
CPSF3-202ENST00000460593 MAGEH1Q9H213 219 aa11.15□□□□□ -0.62
CPSF3-202ENST00000460593 REV1Q9UBZ9 1251 aa11.15□□□□□ -0.62
CPSF3-202ENST00000460593 CLEC4AQ9UMR7 237 aa11.15□□□□□ -0.62
CPSF3-202ENST00000460593 MYADML2A6NDP7 307 aa11.15□□□□□ -0.62
CPSF3-202ENST00000460593 H7C0S8 307 aa11.15□□□□□ -0.62
CPSF3-202ENST00000460593 CXCL11O14625 94 aa11.15□□□□□ -0.62
CPSF3-202ENST00000460593 DDNO94850 711 aaPredicted RBP11.15□□□□□ -0.62
CPSF3-202ENST00000460593 MPC2O95563 127 aa11.15□□□□□ -0.62
CPSF3-202ENST00000460593 NTN1O95631 604 aa11.15□□□□□ -0.62
CPSF3-202ENST00000460593 OR12D1P0DN82 309 aa11.15□□□□□ -0.62
CPSF3-202ENST00000460593 TFPIP10646 304 aa11.15□□□□□ -0.62
CPSF3-202ENST00000460593 IDSP22304 550 aa11.15□□□□□ -0.62
CPSF3-202ENST00000460593 HMGCLP35914 325 aa11.15□□□□□ -0.62
CPSF3-202ENST00000460593 GSTM5P46439 218 aa11.15□□□□□ -0.62
CPSF3-202ENST00000460593 ZNF81P51508 661 aa11.15□□□□□ -0.62
CPSF3-202ENST00000460593 XKP51811 444 aa11.15□□□□□ -0.62
CPSF3-202ENST00000460593 SRP54P61011 504 aaKnown RBP11.15□□□□□ -0.62
CPSF3-202ENST00000460593 MRPS6P82932 125 aaKnown RBP11.15□□□□□ -0.62
CPSF3-202ENST00000460593 CDK6Q00534 326 aa11.15□□□□□ -0.62
CPSF3-202ENST00000460593 RPL6Q02878 288 aaKnown RBP11.15□□□□□ -0.62
CPSF3-202ENST00000460593 MLLT11Q13015 90 aaPredicted RBP11.15□□□□□ -0.62
CPSF3-202ENST00000460593 EXOSC2Q13868 293 aaKnown RBP11.15□□□□□ -0.62
CPSF3-202ENST00000460593 COL9A2Q14055 689 aaPredicted RBP11.15□□□□□ -0.62
CPSF3-202ENST00000460593 GPR176Q14439 515 aa11.15□□□□□ -0.62
CPSF3-202ENST00000460593 SLC5A12Q1EHB4 618 aa11.15□□□□□ -0.62
CPSF3-202ENST00000460593 PRSS53Q2L4Q9 553 aa11.15□□□□□ -0.62
CPSF3-202ENST00000460593 GCNT6Q5T4J0 391 aa11.15□□□□□ -0.62
CPSF3-202ENST00000460593 MTFR2Q6P444 385 aa11.15□□□□□ -0.62
CPSF3-202ENST00000460593 LIPIQ6XZB0 460 aa11.15□□□□□ -0.62
CPSF3-202ENST00000460593 LAPTM4BQ86VI4 370 aa11.15□□□□□ -0.62
CPSF3-202ENST00000460593 ZNF366Q8N895 744 aa11.15□□□□□ -0.62
CPSF3-202ENST00000460593 MARVELD1Q9BSK0 173 aa11.15□□□□□ -0.62
CPSF3-202ENST00000460593 TMEM43Q9BTV4 400 aa11.15□□□□□ -0.62
CPSF3-202ENST00000460593 MED28Q9H204 178 aa11.15□□□□□ -0.62
CPSF3-202ENST00000460593 FBXO44Q9H4M3 255 aa11.15□□□□□ -0.62
CPSF3-202ENST00000460593 HEXA-AS1Q9H8Q6 139 aa11.15□□□□□ -0.62
CPSF3-202ENST00000460593 ZFYVE1Q9HBF4 777 aa11.15□□□□□ -0.62
CPSF3-202ENST00000460593 PCDHB7Q9Y5E2 793 aa11.15□□□□□ -0.62
CPSF3-202ENST00000460593 CDH10Q9Y6N8 788 aa11.15□□□□□ -0.62
CPSF3-202ENST00000460593 MGAT4DA6NG13 374 aa11.14□□□□□ -0.63
CPSF3-202ENST00000460593 SEC14L5O43304 696 aa11.14□□□□□ -0.63
CPSF3-202ENST00000460593 KLKB1P03952 638 aa11.14□□□□□ -0.63
CPSF3-202ENST00000460593 ITGALP20701 1170 aa11.14□□□□□ -0.63
CPSF3-202ENST00000460593 LHCGRP22888 699 aa11.14□□□□□ -0.63
CPSF3-202ENST00000460593 CRYZQ08257 329 aaKnown RBP11.14□□□□□ -0.63
CPSF3-202ENST00000460593 DSC1Q08554 894 aa11.14□□□□□ -0.63
CPSF3-202ENST00000460593 GALEQ14376 348 aa11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms