RNA–Protein interactions for RNA: ENST00000453046.5

SQSTM1-204, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 572 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-204ENST00000453046 WIPF3A6NGB9 483 aa16.88■□□□□ 0.29
SQSTM1-204ENST00000453046 LRRTM2O43300 516 aa16.88■□□□□ 0.29
SQSTM1-204ENST00000453046 PRAMEF2O60811 474 aa16.88■□□□□ 0.29
SQSTM1-204ENST00000453046 DNAJB6O75190 326 aa16.88■□□□□ 0.29
SQSTM1-204ENST00000453046 CRYABP02511 175 aaKnown RBP16.88■□□□□ 0.29
SQSTM1-204ENST00000453046 C1GALT1C1LP0DN25 315 aa16.88■□□□□ 0.29
SQSTM1-204ENST00000453046 HMOX2P30519 316 aa16.88■□□□□ 0.29
SQSTM1-204ENST00000453046 PER3P56645 1201 aa16.88■□□□□ 0.29
SQSTM1-204ENST00000453046 TAS2R50P59544 299 aa16.88■□□□□ 0.29
SQSTM1-204ENST00000453046 IRF8Q02556 426 aa16.88■□□□□ 0.29
SQSTM1-204ENST00000453046 PDCD2Q16342 344 aaPredicted RBP16.88■□□□□ 0.29
SQSTM1-204ENST00000453046 MEP1AQ16819 746 aa16.88■□□□□ 0.29
SQSTM1-204ENST00000453046 TOR1AIP1Q5JTV8 583 aa16.88■□□□□ 0.29
SQSTM1-204ENST00000453046 LIPJQ5W064 366 aa16.88■□□□□ 0.29
SQSTM1-204ENST00000453046 CLEC6AQ6EIG7 209 aa16.88■□□□□ 0.29
SQSTM1-204ENST00000453046 MAMDC2Q7Z304 686 aaPredicted RBP16.88■□□□□ 0.29
SQSTM1-204ENST00000453046 CDYL2Q8N8U2 506 aa16.88■□□□□ 0.29
SQSTM1-204ENST00000453046 TWIST2Q8WVJ9 160 aa16.88■□□□□ 0.29
SQSTM1-204ENST00000453046 CCT6BQ92526 530 aa16.88■□□□□ 0.29
SQSTM1-204ENST00000453046 NR4A3Q92570 626 aa16.88■□□□□ 0.29
SQSTM1-204ENST00000453046 WDR34Q96EX3 536 aa16.88■□□□□ 0.29
SQSTM1-204ENST00000453046 CDK15Q96Q40 435 aa16.88■□□□□ 0.29
SQSTM1-204ENST00000453046 TAAR6Q96RI8 345 aa16.88■□□□□ 0.29
SQSTM1-204ENST00000453046 CCT7Q99832 543 aa16.88■□□□□ 0.29
SQSTM1-204ENST00000453046 SLC6A16Q9GZN6 736 aa16.88■□□□□ 0.29
SQSTM1-204ENST00000453046 CLK4Q9HAZ1 481 aaKnown RBP16.88■□□□□ 0.29
SQSTM1-204ENST00000453046 MMP25Q9NPA2 562 aa16.88■□□□□ 0.29
SQSTM1-204ENST00000453046 PFDN4Q9NQP4 134 aa16.88■□□□□ 0.29
SQSTM1-204ENST00000453046 FIS1Q9Y3D6 152 aa16.88■□□□□ 0.29
SQSTM1-204ENST00000453046 PRMT3O60678 531 aa16.87■□□□□ 0.29
SQSTM1-204ENST00000453046 SKAP2O75563 359 aaPredicted RBP16.87■□□□□ 0.29
SQSTM1-204ENST00000453046 SERPINA6P08185 405 aa16.87■□□□□ 0.29
SQSTM1-204ENST00000453046 RNH1P13489 461 aaKnown RBP16.87■□□□□ 0.29
SQSTM1-204ENST00000453046 CASP2P42575 452 aa16.87■□□□□ 0.29
SQSTM1-204ENST00000453046 FOXA1P55317 472 aa16.87■□□□□ 0.29
SQSTM1-204ENST00000453046 STXBP1P61764 594 aaKnown RBP16.87■□□□□ 0.29
SQSTM1-204ENST00000453046 CHIT1Q13231 466 aa16.87■□□□□ 0.29
SQSTM1-204ENST00000453046 UGT3A2Q3SY77 523 aa16.87■□□□□ 0.29
SQSTM1-204ENST00000453046 C10orf62Q5T681 223 aaPredicted RBP16.87■□□□□ 0.29
SQSTM1-204ENST00000453046 GRHL2Q6ISB3 625 aa16.87■□□□□ 0.29
SQSTM1-204ENST00000453046 H3F3CQ6NXT2 135 aa16.87■□□□□ 0.29
SQSTM1-204ENST00000453046 EPGNQ6UW88 154 aa16.87■□□□□ 0.29
SQSTM1-204ENST00000453046 BEST3Q8N1M1 668 aa16.87■□□□□ 0.29
SQSTM1-204ENST00000453046 KRT78Q8N1N4 520 aa16.87■□□□□ 0.29
SQSTM1-204ENST00000453046 SLC5A8Q8N695 610 aa16.87■□□□□ 0.29
SQSTM1-204ENST00000453046 TTLQ8NG68 377 aa16.87■□□□□ 0.29
SQSTM1-204ENST00000453046 KCNA7Q96RP8 456 aa16.87■□□□□ 0.29
SQSTM1-204ENST00000453046 UTP23Q9BRU9 249 aaKnown RBP16.87■□□□□ 0.29
SQSTM1-204ENST00000453046 EFCAB11Q9BUY7 163 aa16.87■□□□□ 0.29
SQSTM1-204ENST00000453046 NUF2Q9BZD4 464 aa16.87■□□□□ 0.29
SQSTM1-204ENST00000453046 KLHL31Q9H511 634 aa16.87■□□□□ 0.29
SQSTM1-204ENST00000453046 MEAF6Q9HAF1 191 aa16.87■□□□□ 0.29
SQSTM1-204ENST00000453046 DNAJC15Q9Y5T4 150 aa16.87■□□□□ 0.29
SQSTM1-204ENST00000453046 SCN2AQ99250 2005 aa16.87■□□□□ 0.29
SQSTM1-204ENST00000453046 DOPEY1Q5JWR5 2465 aa16.87■□□□□ 0.29
SQSTM1-204ENST00000453046 DIAPH2O60879 1101 aa16.86■□□□□ 0.29
SQSTM1-204ENST00000453046 SLC26A5P58743 744 aa16.86■□□□□ 0.29
SQSTM1-204ENST00000453046 BTN3A2P78410 334 aa16.86■□□□□ 0.29
SQSTM1-204ENST00000453046 BTKQ06187 659 aa16.86■□□□□ 0.29
SQSTM1-204ENST00000453046 HYAL2Q12891 473 aa16.86■□□□□ 0.29
SQSTM1-204ENST00000453046 SLBPQ14493 270 aaKnown RBP eCLIP16.86■□□□□ 0.29
SQSTM1-204ENST00000453046 XKR6Q5GH73 641 aa16.86■□□□□ 0.29
SQSTM1-204ENST00000453046 ZNF766Q5HY98 468 aa16.86■□□□□ 0.29
SQSTM1-204ENST00000453046 PAGE2BQ5JRK9 111 aa16.86■□□□□ 0.29
SQSTM1-204ENST00000453046 ZNF324BQ6AW86 544 aaPredicted RBP16.86■□□□□ 0.29
SQSTM1-204ENST00000453046 TMIGD1Q6UXZ0 262 aa16.86■□□□□ 0.29
SQSTM1-204ENST00000453046 SLCO4C1Q6ZQN7 724 aa16.86■□□□□ 0.29
SQSTM1-204ENST00000453046 MYLK4Q86YV6 388 aaPredicted RBP16.86■□□□□ 0.29
SQSTM1-204ENST00000453046 DNAJB8Q8NHS0 232 aa16.86■□□□□ 0.29
SQSTM1-204ENST00000453046 METTL6Q8TCB7 284 aa16.86■□□□□ 0.29
SQSTM1-204ENST00000453046 PTCD3Q96EY7 689 aaKnown RBP16.86■□□□□ 0.29
SQSTM1-204ENST00000453046 MAELQ96JY0 434 aaKnown RBP16.86■□□□□ 0.29
SQSTM1-204ENST00000453046 PRM3Q9NNZ6 103 aa16.86■□□□□ 0.29
SQSTM1-204ENST00000453046 ANKRD10Q9NXR5 420 aa16.86■□□□□ 0.29
SQSTM1-204ENST00000453046 RNF11Q9Y3C5 154 aa16.86■□□□□ 0.29
SQSTM1-204ENST00000453046 ZGRF1Q86YA3 2104 aa16.85■□□□□ 0.29
SQSTM1-204ENST00000453046 ANKDD1BA6NHY2 528 aa16.85■□□□□ 0.29
SQSTM1-204ENST00000453046 SDHDO14521 159 aa16.85■□□□□ 0.29
SQSTM1-204ENST00000453046 PIP5K1BO14986 540 aa16.85■□□□□ 0.29
SQSTM1-204ENST00000453046 PRAMEF4O60810 478 aa16.85■□□□□ 0.29
SQSTM1-204ENST00000453046 CLDN1O95832 211 aa16.85■□□□□ 0.29
SQSTM1-204ENST00000453046 KRT6AP02538 564 aa16.85■□□□□ 0.29
SQSTM1-204ENST00000453046 KRT6BP04259 564 aa16.85■□□□□ 0.29
SQSTM1-204ENST00000453046 JUNP05412 331 aaKnown RBP16.85■□□□□ 0.29
SQSTM1-204ENST00000453046 SMIM10L1P0DMW3 83 aa16.85■□□□□ 0.29
SQSTM1-204ENST00000453046 MAOAP21397 527 aa16.85■□□□□ 0.29
SQSTM1-204ENST00000453046 KRT6CP48668 564 aa16.85■□□□□ 0.29
SQSTM1-204ENST00000453046 IDH3AP50213 366 aa16.85■□□□□ 0.29
SQSTM1-204ENST00000453046 ST13P50502 369 aaKnown RBP16.85■□□□□ 0.29
SQSTM1-204ENST00000453046 KCNK10P57789 538 aa16.85■□□□□ 0.29
SQSTM1-204ENST00000453046 BTG2P78543 158 aa16.85■□□□□ 0.29
SQSTM1-204ENST00000453046 OC90Q02509 493 aaPredicted RBP16.85■□□□□ 0.29
SQSTM1-204ENST00000453046 SF3A3Q12874 501 aaKnown RBP eCLIP16.85■□□□□ 0.291e-6■■■□□ 15.3
SQSTM1-204ENST00000453046 LAPTM5Q13571 262 aa16.85■□□□□ 0.29
SQSTM1-204ENST00000453046 TUBA3CQ13748 450 aa16.85■□□□□ 0.29
SQSTM1-204ENST00000453046 XKR7Q5GH72 579 aa16.85■□□□□ 0.29
SQSTM1-204ENST00000453046 PRAMEF9Q5VWM5 478 aa16.85■□□□□ 0.29
SQSTM1-204ENST00000453046 TUBA3EQ6PEY2 450 aa16.85■□□□□ 0.29
SQSTM1-204ENST00000453046 GFRALQ6UXV0 394 aa16.85■□□□□ 0.29
SQSTM1-204ENST00000453046 QSOX2Q6ZRP7 698 aa16.85■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms