RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 QPCTLQ9NXS2 382 aa12.28□□□□□ -0.44
HMGB3-204ENST00000448905 TUBA8Q9NY65 449 aaPredicted RBP12.28□□□□□ -0.44
HMGB3-204ENST00000448905 Q9UFV3 132 aa12.28□□□□□ -0.44
HMGB3-204ENST00000448905 PTBP2Q9UKA9 531 aaKnown RBP12.28□□□□□ -0.44
HMGB3-204ENST00000448905 RNF112Q9ULX5 631 aa12.28□□□□□ -0.44
HMGB3-204ENST00000448905 MTO1Q9Y2Z2 717 aaKnown RBP12.28□□□□□ -0.44
HMGB3-204ENST00000448905 ATG4BQ9Y4P1 393 aa12.28□□□□□ -0.44
HMGB3-204ENST00000448905 C2CD3Q4AC94 2353 aa12.28□□□□□ -0.44
HMGB3-204ENST00000448905 HIVEP1P15822 2718 aa12.28□□□□□ -0.44
HMGB3-204ENST00000448905 EFCAB8A8MWE9 144 aa12.27□□□□□ -0.45
HMGB3-204ENST00000448905 CAPN14A8MX76 684 aa12.27□□□□□ -0.45
HMGB3-204ENST00000448905 AHRRA9YTQ3 701 aa12.27□□□□□ -0.45
HMGB3-204ENST00000448905 CTAG2O75638 210 aa12.27□□□□□ -0.45
HMGB3-204ENST00000448905 SEC31AO94979 1220 aaKnown RBP12.27□□□□□ -0.45
HMGB3-204ENST00000448905 ETHE1O95571 254 aa12.27□□□□□ -0.45
HMGB3-204ENST00000448905 TBX6O95947 436 aaPredicted RBP12.27□□□□□ -0.45
HMGB3-204ENST00000448905 TGFB1P01137 390 aa12.27□□□□□ -0.45
HMGB3-204ENST00000448905 CCL3P10147 92 aa12.27□□□□□ -0.45
HMGB3-204ENST00000448905 PCNAP12004 261 aa12.27□□□□□ -0.45
HMGB3-204ENST00000448905 DNASE1P24855 282 aa12.27□□□□□ -0.45
HMGB3-204ENST00000448905 PIGAP37287 484 aa12.27□□□□□ -0.45
HMGB3-204ENST00000448905 SSR2P43308 183 aa12.27□□□□□ -0.45
HMGB3-204ENST00000448905 RPL21P46778 160 aaKnown RBP12.27□□□□□ -0.45
HMGB3-204ENST00000448905 NR0B1P51843 470 aaKnown RBP12.27□□□□□ -0.45
HMGB3-204ENST00000448905 RAP1GDS1P52306 607 aa12.27□□□□□ -0.45
HMGB3-204ENST00000448905 IST1P53990 364 aa12.27□□□□□ -0.45
HMGB3-204ENST00000448905 PLIN5Q00G26 463 aa12.27□□□□□ -0.45
HMGB3-204ENST00000448905 ZNF791Q3KP31 576 aaPredicted RBP12.27□□□□□ -0.45
HMGB3-204ENST00000448905 DEPDC1Q5TB30 811 aa12.27□□□□□ -0.45
HMGB3-204ENST00000448905 TMEM198Q66K66 360 aa12.27□□□□□ -0.45
HMGB3-204ENST00000448905 SLC29A4Q7RTT9 530 aa12.27□□□□□ -0.45
HMGB3-204ENST00000448905 GPR180Q86V85 440 aa12.27□□□□□ -0.45
HMGB3-204ENST00000448905 ZNF321PQ8N8H1 164 aa12.27□□□□□ -0.45
HMGB3-204ENST00000448905 PAQR8Q8TEZ7 354 aa12.27□□□□□ -0.45
HMGB3-204ENST00000448905 ZNF721Q8TF20 911 aa12.27□□□□□ -0.45
HMGB3-204ENST00000448905 ESAMQ96AP7 390 aa12.27□□□□□ -0.45
HMGB3-204ENST00000448905 ANKRD9Q96BM1 317 aaPredicted RBP12.27□□□□□ -0.45
HMGB3-204ENST00000448905 PELOQ9BRX2 385 aaKnown RBP12.27□□□□□ -0.45
HMGB3-204ENST00000448905 TMEM79Q9BSE2 394 aa12.27□□□□□ -0.45
HMGB3-204ENST00000448905 TRIM31Q9BZY9 425 aa12.27□□□□□ -0.45
HMGB3-204ENST00000448905 PHF11Q9UIL8 331 aa12.27□□□□□ -0.45
HMGB3-204ENST00000448905 FAM215AQ9Y5M1 114 aa12.27□□□□□ -0.45
HMGB3-204ENST00000448905 GTF3C1Q12789 2109 aa12.26□□□□□ -0.45
HMGB3-204ENST00000448905 A0A0G2JMM0 328 aa12.26□□□□□ -0.45
HMGB3-204ENST00000448905 A0A1W2PPB8 328 aa12.26□□□□□ -0.45
HMGB3-204ENST00000448905 A0A1W2PRS3 328 aa12.26□□□□□ -0.45
HMGB3-204ENST00000448905 KIR3DP1A8MWS1 328 aa12.26□□□□□ -0.45
HMGB3-204ENST00000448905 CCDC188H7C350 402 aa12.26□□□□□ -0.45
HMGB3-204ENST00000448905 DVL2O14641 736 aa12.26□□□□□ -0.45
HMGB3-204ENST00000448905 TP53I11O14683 189 aa12.26□□□□□ -0.45
HMGB3-204ENST00000448905 OR10H2O60403 315 aa12.26□□□□□ -0.45
HMGB3-204ENST00000448905 CD1DP15813 335 aa12.26□□□□□ -0.45
HMGB3-204ENST00000448905 PTX3P26022 381 aaPredicted RBP12.26□□□□□ -0.45
HMGB3-204ENST00000448905 UQCRC1P31930 480 aa12.26□□□□□ -0.45
HMGB3-204ENST00000448905 SPRP35270 261 aaPredicted RBP12.26□□□□□ -0.45
HMGB3-204ENST00000448905 BUD31P41223 144 aaPredicted RBP12.26□□□□□ -0.45
HMGB3-204ENST00000448905 ID2Q02363 134 aa12.26□□□□□ -0.45
HMGB3-204ENST00000448905 CALCOCO2Q13137 446 aa12.26□□□□□ -0.45
HMGB3-204ENST00000448905 FBXO48Q5FWF7 155 aa12.26□□□□□ -0.45
HMGB3-204ENST00000448905 TBCELQ5QJ74 424 aa12.26□□□□□ -0.45
HMGB3-204ENST00000448905 KHDRBS2Q5VWX1 349 aaKnown RBP12.26□□□□□ -0.45
HMGB3-204ENST00000448905 RTL6Q6ICC9 239 aa12.26□□□□□ -0.45
HMGB3-204ENST00000448905 RAPH1Q70E73 1250 aa12.26□□□□□ -0.45
HMGB3-204ENST00000448905 CYS1Q717R9 158 aa12.26□□□□□ -0.45
HMGB3-204ENST00000448905 LRRC70Q7Z2Q7 622 aa12.26□□□□□ -0.45
HMGB3-204ENST00000448905 UBE3DQ7Z6J8 389 aa12.26□□□□□ -0.45
HMGB3-204ENST00000448905 LIX1LQ8IVB5 337 aa12.26□□□□□ -0.45
HMGB3-204ENST00000448905 OR4N5Q8IXE1 308 aa12.26□□□□□ -0.45
HMGB3-204ENST00000448905 LAS2Q8IYD9 372 aa12.26□□□□□ -0.45
HMGB3-204ENST00000448905 TAGAPQ8N103 731 aa12.26□□□□□ -0.45
HMGB3-204ENST00000448905 PDPRQ8NCN5 879 aa12.26□□□□□ -0.45
HMGB3-204ENST00000448905 FAM13CQ8NE31 585 aa12.26□□□□□ -0.45
HMGB3-204ENST00000448905 ZNF473Q8WTR7 871 aaKnown RBP12.26□□□□□ -0.45
HMGB3-204ENST00000448905 PPWD1Q96BP3 646 aaKnown RBP12.26□□□□□ -0.45
HMGB3-204ENST00000448905 SPACA9Q96E40 222 aaPredicted RBP12.26□□□□□ -0.45
HMGB3-204ENST00000448905 RMND5BQ96G75 393 aaPredicted RBP12.26□□□□□ -0.45
HMGB3-204ENST00000448905 FBXL20Q96IG2 436 aa12.26□□□□□ -0.45
HMGB3-204ENST00000448905 JSRP1Q96MG2 331 aaPredicted RBP12.26□□□□□ -0.45
HMGB3-204ENST00000448905 CPNE1Q99829 537 aa12.26□□□□□ -0.45
HMGB3-204ENST00000448905 CNPPD1Q9BV87 410 aa12.26□□□□□ -0.45
HMGB3-204ENST00000448905 MS4A8Q9BY19 250 aa12.26□□□□□ -0.45
HMGB3-204ENST00000448905 CLEC4MQ9H2X3 399 aaPredicted RBP12.26□□□□□ -0.45
HMGB3-204ENST00000448905 CAB39LQ9H9S4 337 aa12.26□□□□□ -0.45
HMGB3-204ENST00000448905 WDR41Q9HAD4 459 aa12.26□□□□□ -0.45
HMGB3-204ENST00000448905 NMRAL1Q9HBL8 299 aa12.26□□□□□ -0.45
HMGB3-204ENST00000448905 CCM2LQ9NUG4 571 aaPredicted RBP12.26□□□□□ -0.45
HMGB3-204ENST00000448905 TRMT1Q9NXH9 659 aaKnown RBP12.26□□□□□ -0.45
HMGB3-204ENST00000448905 OPTCQ9UBM4 332 aa12.26□□□□□ -0.45
HMGB3-204ENST00000448905 RNF14Q9UBS8 474 aa12.26□□□□□ -0.45
HMGB3-204ENST00000448905 MTRF1LQ9UGC7 380 aaKnown RBP12.26□□□□□ -0.45
HMGB3-204ENST00000448905 FOXD3Q9UJU5 478 aaPredicted RBP12.26□□□□□ -0.45
HMGB3-204ENST00000448905 L3MBTL1Q9Y468 752 aa12.26□□□□□ -0.45
HMGB3-204ENST00000448905 ANGPTL3Q9Y5C1 460 aa12.26□□□□□ -0.45
HMGB3-204ENST00000448905 LIPGQ9Y5X9 500 aa12.26□□□□□ -0.45
HMGB3-204ENST00000448905 OR6C76A6NM76 312 aa12.25□□□□□ -0.45
HMGB3-204ENST00000448905 E7ESA3 106 aa12.25□□□□□ -0.45
HMGB3-204ENST00000448905 RTCAO00442 366 aaKnown RBP12.25□□□□□ -0.45
HMGB3-204ENST00000448905 SCELO95171 688 aa12.25□□□□□ -0.45
HMGB3-204ENST00000448905 IL2RAP01589 272 aa12.25□□□□□ -0.45
HMGB3-204ENST00000448905 CELA3AP09093 270 aa12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 86.7 ms