RNA–Protein interactions for RNA: ENST00000447376.1

SF3A1-204, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 5

Gene SF3A1, Length 418 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-204ENST00000447376 CDK2AP1O14519 115 aa15.31■□□□□ 0.04
SF3A1-204ENST00000447376 UBFD1O14562 309 aaKnown RBP15.31■□□□□ 0.04
SF3A1-204ENST00000447376 LDB3O75112 727 aa15.31■□□□□ 0.04
SF3A1-204ENST00000447376 EEDO75530 441 aaKnown RBP15.31■□□□□ 0.04
SF3A1-204ENST00000447376 SNUPNO95149 360 aaKnown RBP15.31■□□□□ 0.04
SF3A1-204ENST00000447376 WISP1O95388 367 aa15.31■□□□□ 0.04
SF3A1-204ENST00000447376 ETHE1O95571 254 aa15.31■□□□□ 0.04
SF3A1-204ENST00000447376 DHRS4L1P0CG22 281 aa15.31■□□□□ 0.04
SF3A1-204ENST00000447376 GRK2P25098 689 aa15.31■□□□□ 0.04
SF3A1-204ENST00000447376 CD97P48960 835 aa15.31■□□□□ 0.04
SF3A1-204ENST00000447376 HNRNPFP52597 415 aaKnown RBP15.31■□□□□ 0.04
SF3A1-204ENST00000447376 MAPK12P53778 367 aa15.31■□□□□ 0.04
SF3A1-204ENST00000447376 INPP5JQ15735 1006 aaPredicted RBP15.31■□□□□ 0.04
SF3A1-204ENST00000447376 C6orf163Q5TEZ5 329 aa15.31■□□□□ 0.04
SF3A1-204ENST00000447376 OR52E8Q6IFG1 317 aa15.31■□□□□ 0.04
SF3A1-204ENST00000447376 RPS19BP1Q86WX3 136 aaKnown RBP15.31■□□□□ 0.04
SF3A1-204ENST00000447376 LGI4Q8N135 537 aa15.31■□□□□ 0.04
SF3A1-204ENST00000447376 TMEM52Q8NDY8 209 aa15.31■□□□□ 0.04
SF3A1-204ENST00000447376 OR1N1Q8NGS0 311 aa15.31■□□□□ 0.04
SF3A1-204ENST00000447376 ELP5Q8TE02 316 aa15.31■□□□□ 0.04
SF3A1-204ENST00000447376 ARL8AQ96BM9 186 aa15.31■□□□□ 0.04
SF3A1-204ENST00000447376 ART5Q96L15 291 aa15.31■□□□□ 0.04
SF3A1-204ENST00000447376 SH3GL2Q99962 352 aa15.31■□□□□ 0.04
SF3A1-204ENST00000447376 UTP23Q9BRU9 249 aaKnown RBP15.31■□□□□ 0.04
SF3A1-204ENST00000447376 TIMM22Q9Y584 194 aa15.31■□□□□ 0.04
SF3A1-204ENST00000447376 TRBV11-1A0A0K0K1C0 115 aa15.3■□□□□ 0.04
SF3A1-204ENST00000447376 PROM1O43490 865 aa15.3■□□□□ 0.04
SF3A1-204ENST00000447376 WDPCPO95876 746 aa15.3■□□□□ 0.04
SF3A1-204ENST00000447376 SERPINE1P05121 402 aa15.3■□□□□ 0.04
SF3A1-204ENST00000447376 KLK1P06870 262 aa15.3■□□□□ 0.04
SF3A1-204ENST00000447376 HNRNPH2P55795 449 aaKnown RBP15.3■□□□□ 0.04
SF3A1-204ENST00000447376 KCNC4Q03721 635 aa15.3■□□□□ 0.04
SF3A1-204ENST00000447376 MPP2Q14168 576 aa15.3■□□□□ 0.04
SF3A1-204ENST00000447376 CHI3L2Q15782 390 aa15.3■□□□□ 0.04
SF3A1-204ENST00000447376 IMPG1Q17R60 797 aa15.3■□□□□ 0.04
SF3A1-204ENST00000447376 ARL13AQ5H913 290 aaPredicted RBP15.3■□□□□ 0.04
SF3A1-204ENST00000447376 H3F3CQ6NXT2 135 aa15.3■□□□□ 0.04
SF3A1-204ENST00000447376 ZCCHC23Q6ZST2 131 aa15.3■□□□□ 0.04
SF3A1-204ENST00000447376 COMMD6Q7Z4G1 85 aa15.3■□□□□ 0.04
SF3A1-204ENST00000447376 CUZD1Q86UP6 607 aa15.3■□□□□ 0.04
SF3A1-204ENST00000447376 CRLF3Q8IUI8 442 aa15.3■□□□□ 0.04
SF3A1-204ENST00000447376 TRIM42Q8IWZ5 723 aa15.3■□□□□ 0.04
SF3A1-204ENST00000447376 KIRREL3Q8IZU9 778 aa15.3■□□□□ 0.04
SF3A1-204ENST00000447376 METTL4Q8N3J2 472 aa15.3■□□□□ 0.04
SF3A1-204ENST00000447376 MORN4Q8NDC4 146 aa15.3■□□□□ 0.04
SF3A1-204ENST00000447376 SCN2AQ99250 2005 aa15.3■□□□□ 0.04
SF3A1-204ENST00000447376 PFDN4Q9NQP4 134 aa15.3■□□□□ 0.04
SF3A1-204ENST00000447376 FARSBQ9NSD9 589 aaKnown RBP15.3■□□□□ 0.04
SF3A1-204ENST00000447376 SDAD1Q9NVU7 687 aaKnown RBP eCLIP15.3■□□□□ 0.04
SF3A1-204ENST00000447376 PLA2G3Q9NZ20 509 aa15.3■□□□□ 0.04
SF3A1-204ENST00000447376 VTI1BQ9UEU0 232 aa15.3■□□□□ 0.04
SF3A1-204ENST00000447376 ATG4BQ9Y4P1 393 aa15.3■□□□□ 0.04
SF3A1-204ENST00000447376 COPG1Q9Y678 874 aaKnown RBP15.3■□□□□ 0.04
SF3A1-204ENST00000447376 DOCK10Q96BY6 2186 aa15.29■□□□□ 0.04
SF3A1-204ENST00000447376 SERTM1A2A2V5 107 aa15.29■□□□□ 0.04
SF3A1-204ENST00000447376 C17orf105B2RV13 164 aa15.29■□□□□ 0.04
SF3A1-204ENST00000447376 TMEM114B3SHH9 223 aa15.29■□□□□ 0.04
SF3A1-204ENST00000447376 AZIN1O14977 448 aa15.29■□□□□ 0.04
SF3A1-204ENST00000447376 OR10H2O60403 315 aa15.29■□□□□ 0.04
SF3A1-204ENST00000447376 HSPA4LO95757 839 aa15.29■□□□□ 0.04
SF3A1-204ENST00000447376 GBAP04062 536 aa15.29■□□□□ 0.04
SF3A1-204ENST00000447376 FGF4P08620 206 aa15.29■□□□□ 0.04
SF3A1-204ENST00000447376 PIK3R1P27986 724 aa15.29■□□□□ 0.04
SF3A1-204ENST00000447376 TNFSF10P50591 281 aa15.29■□□□□ 0.04
SF3A1-204ENST00000447376 FOXK1P85037 733 aa15.29■□□□□ 0.04
SF3A1-204ENST00000447376 OC90Q02509 493 aaPredicted RBP15.29■□□□□ 0.04
SF3A1-204ENST00000447376 FOLH1Q04609 750 aa15.29■□□□□ 0.04
SF3A1-204ENST00000447376 ACSM2AQ08AH3 577 aa15.29■□□□□ 0.04
SF3A1-204ENST00000447376 INAQ16352 499 aa15.29■□□□□ 0.04
SF3A1-204ENST00000447376 SPIN4Q56A73 249 aa15.29■□□□□ 0.04
SF3A1-204ENST00000447376 ACSM2BQ68CK6 577 aa15.29■□□□□ 0.04
SF3A1-204ENST00000447376 FCRLBQ6BAA4 426 aa15.29■□□□□ 0.04
SF3A1-204ENST00000447376 MRM1Q6IN84 353 aaKnown RBP15.29■□□□□ 0.04
SF3A1-204ENST00000447376 FAM180AQ6UWF9 173 aa15.29■□□□□ 0.04
SF3A1-204ENST00000447376 CLYBLQ8N0X4 340 aa15.29■□□□□ 0.04
SF3A1-204ENST00000447376 BEST3Q8N1M1 668 aa15.29■□□□□ 0.04
SF3A1-204ENST00000447376 Q8NA96 180 aa15.29■□□□□ 0.04
SF3A1-204ENST00000447376 MGARPQ8TDB4 240 aa15.29■□□□□ 0.04
SF3A1-204ENST00000447376 NCLNQ969V3 563 aa15.29■□□□□ 0.04
SF3A1-204ENST00000447376 KCNA7Q96RP8 456 aa15.29■□□□□ 0.04
SF3A1-204ENST00000447376 FAIM2Q9BWQ8 316 aa15.29■□□□□ 0.04
SF3A1-204ENST00000447376 SHCBP1LQ9BZQ2 653 aa15.29■□□□□ 0.04
SF3A1-204ENST00000447376 OR8D2Q9GZM6 311 aa15.29■□□□□ 0.04
SF3A1-204ENST00000447376 CDCP1Q9H5V8 836 aa15.29■□□□□ 0.04
SF3A1-204ENST00000447376 PSME2Q9UL46 239 aa15.29■□□□□ 0.04
SF3A1-204ENST00000447376 ASB4Q9Y574 426 aa15.29■□□□□ 0.04
SF3A1-204ENST00000447376 PCDHGA10Q9Y5H3 936 aa15.29■□□□□ 0.04
SF3A1-204ENST00000447376 GABRR3A8MPY1 467 aa15.28■□□□□ 0.04
SF3A1-204ENST00000447376 TMPRSS11DO60235 418 aa15.28■□□□□ 0.04
SF3A1-204ENST00000447376 FGF17O60258 216 aa15.28■□□□□ 0.04
SF3A1-204ENST00000447376 ZFAND5O76080 213 aa15.28■□□□□ 0.04
SF3A1-204ENST00000447376 GPR75O95800 540 aa15.28■□□□□ 0.04
SF3A1-204ENST00000447376 ALOX15P16050 662 aaPredicted RBP15.28■□□□□ 0.04
SF3A1-204ENST00000447376 STT3AP46977 705 aa15.28■□□□□ 0.04
SF3A1-204ENST00000447376 ID2Q02363 134 aa15.28■□□□□ 0.04
SF3A1-204ENST00000447376 STX3Q13277 289 aa15.28■□□□□ 0.04
SF3A1-204ENST00000447376 ELOAQ14241 798 aaKnown RBP15.28■□□□□ 0.04
SF3A1-204ENST00000447376 SPDYAQ5MJ70 313 aa15.28■□□□□ 0.04
SF3A1-204ENST00000447376 TCHHL1Q5QJ38 904 aaPredicted RBP15.28■□□□□ 0.04
SF3A1-204ENST00000447376 C18orf63Q68DL7 685 aa15.28■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms