RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 ITM2CQ9NQX7 267 aa12.85□□□□□ -0.35
CCDC88A-204ENST00000413716 PTTG1O95997 202 aa12.85□□□□□ -0.35
CCDC88A-204ENST00000413716 PRKCIP41743 596 aa12.85□□□□□ -0.35
CCDC88A-204ENST00000413716 RAB8AP61006 207 aa12.85□□□□□ -0.35
CCDC88A-204ENST00000413716 TRAM2Q15035 370 aa12.85□□□□□ -0.35
CCDC88A-204ENST00000413716 TMEM225Q6GV28 225 aa12.85□□□□□ -0.35
CCDC88A-204ENST00000413716 DDX51Q8N8A6 666 aaKnown RBP eCLIP12.85□□□□□ -0.35
CCDC88A-204ENST00000413716 TMEM234Q8WY98 164 aa12.85□□□□□ -0.35
CCDC88A-204ENST00000413716 PGAM5Q96HS1 289 aa12.85□□□□□ -0.35
CCDC88A-204ENST00000413716 ACTRT3Q9BYD9 372 aa12.85□□□□□ -0.35
CCDC88A-204ENST00000413716 B4GALT7Q9UBV7 327 aa12.85□□□□□ -0.35
CCDC88A-204ENST00000413716 RDH16O75452 317 aa12.84□□□□□ -0.35
CCDC88A-204ENST00000413716 GLUD1P00367 558 aa12.84□□□□□ -0.35
CCDC88A-204ENST00000413716 RHCEP18577 417 aa12.84□□□□□ -0.35
CCDC88A-204ENST00000413716 ADORA2AP29274 412 aa12.84□□□□□ -0.35
CCDC88A-204ENST00000413716 MARCKSL1P49006 195 aa12.84□□□□□ -0.35
CCDC88A-204ENST00000413716 RARRES1P49788 294 aa12.84□□□□□ -0.35
CCDC88A-204ENST00000413716 TOB1P50616 345 aaPredicted RBP12.84□□□□□ -0.35
CCDC88A-204ENST00000413716 MAP2K5Q13163 448 aa12.84□□□□□ -0.35
CCDC88A-204ENST00000413716 MPPED2Q15777 294 aa12.84□□□□□ -0.35
CCDC88A-204ENST00000413716 WDR45BQ5MNZ6 344 aa12.84□□□□□ -0.35
CCDC88A-204ENST00000413716 TSPEARQ8WU66 669 aa12.84□□□□□ -0.35
CCDC88A-204ENST00000413716 UPRTQ96BW1 309 aa12.84□□□□□ -0.35
CCDC88A-204ENST00000413716 OR52B2Q96RD2 323 aa12.84□□□□□ -0.35
CCDC88A-204ENST00000413716 ASB3Q9Y575 518 aa12.84□□□□□ -0.35
CCDC88A-204ENST00000413716 A0A0G2JLW4 131 aa12.84□□□□□ -0.35
CCDC88A-204ENST00000413716 A0A1W2PPV4 95 aa12.84□□□□□ -0.35
CCDC88A-204ENST00000413716 CRTAPO75718 401 aaPredicted RBP12.84□□□□□ -0.35
CCDC88A-204ENST00000413716 OAZ1P54368 228 aa12.84□□□□□ -0.35
CCDC88A-204ENST00000413716 KCNJ11Q14654 390 aa12.84□□□□□ -0.35
CCDC88A-204ENST00000413716 TMEM236Q5W0B7 351 aa12.84□□□□□ -0.35
CCDC88A-204ENST00000413716 FOXR2Q6PJQ5 311 aa12.84□□□□□ -0.35
CCDC88A-204ENST00000413716 PIGZQ86VD9 579 aa12.84□□□□□ -0.35
CCDC88A-204ENST00000413716 NELL2Q99435 816 aa12.84□□□□□ -0.35
CCDC88A-204ENST00000413716 HNRNPABQ99729 332 aaKnown RBP12.84□□□□□ -0.35
CCDC88A-204ENST00000413716 G6PC3Q9BUM1 346 aa12.84□□□□□ -0.35
CCDC88A-204ENST00000413716 SLC25A31Q9H0C2 315 aa12.84□□□□□ -0.35
CCDC88A-204ENST00000413716 COQ3Q9NZJ6 369 aa12.84□□□□□ -0.35
CCDC88A-204ENST00000413716 NPC1O15118 1278 aa12.84□□□□□ -0.35
CCDC88A-204ENST00000413716 IL32P24001 234 aa12.84□□□□□ -0.35
CCDC88A-204ENST00000413716 GAS6Q14393 721 aa12.84□□□□□ -0.35
CCDC88A-204ENST00000413716 OR6C4Q8NGE1 309 aa12.84□□□□□ -0.35
CCDC88A-204ENST00000413716 FUCA2Q9BTY2 467 aa12.84□□□□□ -0.35
CCDC88A-204ENST00000413716 ABCG5Q9H222 651 aa12.84□□□□□ -0.35
CCDC88A-204ENST00000413716 KLHL21Q9UJP4 597 aa12.84□□□□□ -0.35
CCDC88A-204ENST00000413716 NPPAP01160 153 aa12.84□□□□□ -0.35
CCDC88A-204ENST00000413716 FAM173AQ9BQD7 235 aa12.84□□□□□ -0.35
CCDC88A-204ENST00000413716 ACTL8Q9H568 366 aa12.84□□□□□ -0.35
CCDC88A-204ENST00000413716 ARAFP10398 606 aa12.84□□□□□ -0.35
CCDC88A-204ENST00000413716 ACY1Q03154 408 aa12.84□□□□□ -0.35
CCDC88A-204ENST00000413716 NDUFAF5Q5TEU4 345 aa12.84□□□□□ -0.35
CCDC88A-204ENST00000413716 OTOP3Q7RTS5 596 aa12.84□□□□□ -0.35
CCDC88A-204ENST00000413716 OR8K5Q8NH50 307 aa12.84□□□□□ -0.35
CCDC88A-204ENST00000413716 PLEKHO2Q8TD55 490 aa12.84□□□□□ -0.35
CCDC88A-204ENST00000413716 MGAT4BQ9UQ53 548 aa12.84□□□□□ -0.35
CCDC88A-204ENST00000413716 A0A1W2PQH9 124 aa12.84□□□□□ -0.35
CCDC88A-204ENST00000413716 GAAP10253 952 aa12.84□□□□□ -0.35
CCDC88A-204ENST00000413716 FGFBP1Q14512 234 aa12.84□□□□□ -0.35
CCDC88A-204ENST00000413716 PUM2Q8TB72 1066 aaKnown RBP eCLIP12.84□□□□□ -0.356e-7■■□□□ 13.5
CCDC88A-204ENST00000413716 IL26Q9NPH9 171 aa12.84□□□□□ -0.35
CCDC88A-204ENST00000413716 LIN7CQ9NUP9 197 aaKnown RBP12.84□□□□□ -0.35
CCDC88A-204ENST00000413716 PRDM4Q9UKN5 801 aa12.84□□□□□ -0.35
CCDC88A-204ENST00000413716 TRBV23OR9-2A0A075B6M9 112 aa12.84□□□□□ -0.35
CCDC88A-204ENST00000413716 PHYHO14832 338 aa12.84□□□□□ -0.35
CCDC88A-204ENST00000413716 CYP27C1Q4G0S4 372 aa12.84□□□□□ -0.35
CCDC88A-204ENST00000413716 SCML2Q9UQR0 700 aa12.84□□□□□ -0.35
CCDC88A-204ENST00000413716 CD8B2A6NJW9 211 aa12.84□□□□□ -0.35
CCDC88A-204ENST00000413716 TFPTP0C1Z6 253 aa12.84□□□□□ -0.35
CCDC88A-204ENST00000413716 CD8BP10966 210 aa12.84□□□□□ -0.35
CCDC88A-204ENST00000413716 SLC36A3Q495N2 470 aa12.84□□□□□ -0.35
CCDC88A-204ENST00000413716 RNASE10Q5GAN6 216 aaKnown RBP12.84□□□□□ -0.35
CCDC88A-204ENST00000413716 LDB1Q86U70 411 aaPredicted RBP12.84□□□□□ -0.35
CCDC88A-204ENST00000413716 TPRA1Q86W33 373 aa12.84□□□□□ -0.35
CCDC88A-204ENST00000413716 IL17RCQ8NAC3 791 aa12.84□□□□□ -0.35
CCDC88A-204ENST00000413716 NUS1Q96E22 293 aa12.84□□□□□ -0.35
CCDC88A-204ENST00000413716 BIRC8Q96P09 236 aa12.84□□□□□ -0.35
CCDC88A-204ENST00000413716 KLHL9Q9P2J3 617 aa12.84□□□□□ -0.35
CCDC88A-204ENST00000413716 CPQQ9Y646 472 aa12.84□□□□□ -0.35
CCDC88A-204ENST00000413716 GPR75-ASB3A0A0A6YYF3 556 aa12.83□□□□□ -0.35
CCDC88A-204ENST00000413716 SEC13P55735 322 aa12.83□□□□□ -0.35
CCDC88A-204ENST00000413716 MRPS10P82664 201 aaKnown RBP12.83□□□□□ -0.35
CCDC88A-204ENST00000413716 CDONQ4KMG0 1287 aa12.83□□□□□ -0.35
CCDC88A-204ENST00000413716 C19orf35Q6ZS72 473 aa12.83□□□□□ -0.35
CCDC88A-204ENST00000413716 ZNF679Q8IYX0 411 aa12.83□□□□□ -0.35
CCDC88A-204ENST00000413716 C12orf29Q8N999 325 aa12.83□□□□□ -0.35
CCDC88A-204ENST00000413716 OR10T2Q8NGX3 314 aa12.83□□□□□ -0.35
CCDC88A-204ENST00000413716 FNDC9Q8TBE3 224 aa12.83□□□□□ -0.35
CCDC88A-204ENST00000413716 OCSTAMPQ9BR26 566 aa12.83□□□□□ -0.35
CCDC88A-204ENST00000413716 HCN4Q9Y3Q4 1203 aa12.83□□□□□ -0.35
CCDC88A-204ENST00000413716 KLK1P06870 262 aa12.83□□□□□ -0.36
CCDC88A-204ENST00000413716 KLK3P07288 261 aaPredicted RBP12.83□□□□□ -0.36
CCDC88A-204ENST00000413716 PAX6P26367 422 aa12.83□□□□□ -0.36
CCDC88A-204ENST00000413716 NDUFS1P28331 727 aa12.83□□□□□ -0.36
CCDC88A-204ENST00000413716 MAP4K2Q12851 820 aa12.83□□□□□ -0.36
CCDC88A-204ENST00000413716 BRICD5Q6PL45 260 aa12.83□□□□□ -0.36
CCDC88A-204ENST00000413716 NAA40Q86UY6 237 aa12.83□□□□□ -0.36
CCDC88A-204ENST00000413716 PYCR2Q96C36 320 aa12.83□□□□□ -0.36
CCDC88A-204ENST00000413716 CMTM7Q96FZ5 175 aa12.83□□□□□ -0.36
CCDC88A-204ENST00000413716 SLC28A3Q9HAS3 691 aa12.83□□□□□ -0.36
CCDC88A-204ENST00000413716 DUS2Q9NX74 493 aaKnown RBP12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms