RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 C22orf42Q6IC83 251 aa12.41□□□□□ -0.42
COL6A3-206ENST00000409809 METTL2BQ6P1Q9 378 aaKnown RBP12.41□□□□□ -0.42
COL6A3-206ENST00000409809 IQCHQ86VS3 1027 aa12.41□□□□□ -0.42
COL6A3-206ENST00000409809 MCEMP1Q8IX19 187 aa12.41□□□□□ -0.42
COL6A3-206ENST00000409809 CASTOR1Q8WTX7 329 aa12.41□□□□□ -0.42
COL6A3-206ENST00000409809 NT5C3BQ969T7 300 aa12.41□□□□□ -0.42
COL6A3-206ENST00000409809 GRM6O15303 877 aa12.41□□□□□ -0.42
COL6A3-206ENST00000409809 PSMD10O75832 226 aa12.41□□□□□ -0.42
COL6A3-206ENST00000409809 ENDOD1O94919 500 aa12.41□□□□□ -0.42
COL6A3-206ENST00000409809 BPIP17213 487 aa12.41□□□□□ -0.42
COL6A3-206ENST00000409809 AVPR1BP47901 424 aa12.41□□□□□ -0.42
COL6A3-206ENST00000409809 FXYD6P3P58550 94 aa12.41□□□□□ -0.42
COL6A3-206ENST00000409809 TBCEQ15813 527 aaPredicted RBP12.41□□□□□ -0.42
COL6A3-206ENST00000409809 PLPP5Q8NEB5 264 aa12.41□□□□□ -0.42
COL6A3-206ENST00000409809 RNF141Q8WVD5 230 aa12.41□□□□□ -0.42
COL6A3-206ENST00000409809 OR8D1Q8WZ84 308 aa12.41□□□□□ -0.42
COL6A3-206ENST00000409809 FCRL2Q96LA5 508 aaPredicted RBP12.41□□□□□ -0.42
COL6A3-206ENST00000409809 NOCTQ9UK39 431 aaKnown RBP12.41□□□□□ -0.42
COL6A3-206ENST00000409809 AGRPO00253 132 aa12.41□□□□□ -0.42
COL6A3-206ENST00000409809 ZNF254O75437 659 aa12.41□□□□□ -0.42
COL6A3-206ENST00000409809 DIRAS1O95057 198 aa12.41□□□□□ -0.42
COL6A3-206ENST00000409809 BDNFP23560 247 aa12.41□□□□□ -0.42
COL6A3-206ENST00000409809 GPR139Q6DWJ6 353 aa12.41□□□□□ -0.42
COL6A3-206ENST00000409809 NANOGP8Q6NSW7 305 aa12.41□□□□□ -0.42
COL6A3-206ENST00000409809 KCTD20Q7Z5Y7 419 aa12.41□□□□□ -0.42
COL6A3-206ENST00000409809 ORAI3Q9BRQ5 295 aa12.41□□□□□ -0.42
COL6A3-206ENST00000409809 TSPAN10Q9H1Z9 355 aaPredicted RBP12.41□□□□□ -0.42
COL6A3-206ENST00000409809 NANOGQ9H9S0 305 aa12.41□□□□□ -0.42
COL6A3-206ENST00000409809 PCTPQ9UKL6 214 aa12.41□□□□□ -0.42
COL6A3-206ENST00000409809 CDK5RAP2Q96SN8 1893 aa12.41□□□□□ -0.42
COL6A3-206ENST00000409809 GPR137BO60478 399 aa12.41□□□□□ -0.42
COL6A3-206ENST00000409809 PDGFAP04085 211 aa12.41□□□□□ -0.42
COL6A3-206ENST00000409809 GRM2Q14416 872 aa12.41□□□□□ -0.42
COL6A3-206ENST00000409809 FAM162BQ5T6X4 162 aa12.41□□□□□ -0.42
COL6A3-206ENST00000409809 CEACAM20Q6UY09 585 aa12.41□□□□□ -0.42
COL6A3-206ENST00000409809 ZNF619Q8N2I2 560 aa12.41□□□□□ -0.42
COL6A3-206ENST00000409809 ADAMTS16Q8TE57 1224 aa12.41□□□□□ -0.42
COL6A3-206ENST00000409809 TRAPPC12Q8WVT3 735 aa12.41□□□□□ -0.42
COL6A3-206ENST00000409809 SLC2A11Q9BYW1 496 aa12.41□□□□□ -0.42
COL6A3-206ENST00000409809 BRINP2Q9C0B6 783 aa12.41□□□□□ -0.42
COL6A3-206ENST00000409809 LYRM2Q9NU23 88 aaPredicted RBP12.41□□□□□ -0.42
COL6A3-206ENST00000409809 FBXO10Q9UK96 956 aa12.41□□□□□ -0.42
COL6A3-206ENST00000409809 LTN1O94822 1766 aa12.41□□□□□ -0.42
COL6A3-206ENST00000409809 UQCRC2P22695 453 aa12.41□□□□□ -0.42
COL6A3-206ENST00000409809 CNIH2Q6PI25 160 aa12.41□□□□□ -0.42
COL6A3-206ENST00000409809 C19orf35Q6ZS72 473 aa12.41□□□□□ -0.42
COL6A3-206ENST00000409809 CMTM1Q8IZ96 169 aa12.41□□□□□ -0.42
COL6A3-206ENST00000409809 SLC30A7Q8NEW0 376 aa12.41□□□□□ -0.42
COL6A3-206ENST00000409809 HAS1Q92839 578 aa12.41□□□□□ -0.42
COL6A3-206ENST00000409809 MAL2Q969L2 176 aa12.41□□□□□ -0.42
COL6A3-206ENST00000409809 AKT1S1Q96B36 256 aa12.41□□□□□ -0.42
COL6A3-206ENST00000409809 AGPAT4Q9NRZ5 378 aa12.41□□□□□ -0.42
COL6A3-206ENST00000409809 ALPPL2P10696 532 aa12.41□□□□□ -0.42
COL6A3-206ENST00000409809 CTNNB1P35222 781 aa12.41□□□□□ -0.42
COL6A3-206ENST00000409809 ARRDC4Q8NCT1 418 aa12.41□□□□□ -0.42
COL6A3-206ENST00000409809 PLD4Q96BZ4 506 aa12.41□□□□□ -0.42
COL6A3-206ENST00000409809 BEX2Q9BXY8 128 aa12.41□□□□□ -0.42
COL6A3-206ENST00000409809 PLEKHA3Q9HB20 300 aa12.41□□□□□ -0.42
COL6A3-206ENST00000409809 IFT172Q9UG01 1749 aa12.41□□□□□ -0.42
COL6A3-206ENST00000409809 ONECUT3O60422 494 aaPredicted RBP12.41□□□□□ -0.42
COL6A3-206ENST00000409809 LILRB5O75023 590 aa12.41□□□□□ -0.42
COL6A3-206ENST00000409809 RAB40ALP0C0E4 278 aa12.41□□□□□ -0.42
COL6A3-206ENST00000409809 AMD1P17707 334 aa12.41□□□□□ -0.42
COL6A3-206ENST00000409809 NFYBP25208 207 aa12.41□□□□□ -0.42
COL6A3-206ENST00000409809 IMPA1P29218 277 aa12.41□□□□□ -0.42
COL6A3-206ENST00000409809 SRPXP78539 464 aa12.41□□□□□ -0.42
COL6A3-206ENST00000409809 TANGO2Q6ICL3 276 aa12.41□□□□□ -0.42
COL6A3-206ENST00000409809 SLC7A5P1Q8MH63 180 aa12.41□□□□□ -0.42
COL6A3-206ENST00000409809 OR6Q1Q8NGQ2 317 aa12.41□□□□□ -0.42
COL6A3-206ENST00000409809 RAB40AQ8WXH6 277 aa12.41□□□□□ -0.42
COL6A3-206ENST00000409809 HSD17B14Q9BPX1 270 aa12.41□□□□□ -0.42
COL6A3-206ENST00000409809 RBFOX1Q9NWB1 397 aaKnown RBP12.41□□□□□ -0.42
COL6A3-206ENST00000409809 ZNF226Q9NYT6 803 aa12.41□□□□□ -0.42
COL6A3-206ENST00000409809 ERVK-18Q9QC07 812 aa12.41□□□□□ -0.42
COL6A3-206ENST00000409809 ARVCFO00192 962 aa12.4□□□□□ -0.42
COL6A3-206ENST00000409809 INSIG1O15503 277 aa12.4□□□□□ -0.42
COL6A3-206ENST00000409809 TSPAN3O60637 253 aa12.4□□□□□ -0.42
COL6A3-206ENST00000409809 CCINQ13939 588 aa12.4□□□□□ -0.42
COL6A3-206ENST00000409809 DUSP6Q16828 381 aa12.4□□□□□ -0.42
COL6A3-206ENST00000409809 SEZ6Q53EL9 994 aa12.4□□□□□ -0.42
COL6A3-206ENST00000409809 UNC5DQ6UXZ4 953 aa12.4□□□□□ -0.42
COL6A3-206ENST00000409809 OR6T1Q8NGN1 323 aa12.4□□□□□ -0.42
COL6A3-206ENST00000409809 BORCS8Q96FH0 119 aa12.4□□□□□ -0.42
COL6A3-206ENST00000409809 PDCD2LQ9BRP1 358 aa12.4□□□□□ -0.42
COL6A3-206ENST00000409809 C12orf10Q9HB07 376 aa12.4□□□□□ -0.42
COL6A3-206ENST00000409809 PCDHB14Q9Y5E9 798 aa12.4□□□□□ -0.42
COL6A3-206ENST00000409809 ZNF726A6NNF4 738 aa12.4□□□□□ -0.42
COL6A3-206ENST00000409809 PTPN2P17706 415 aa12.4□□□□□ -0.42
COL6A3-206ENST00000409809 DDOSTP39656 456 aa12.4□□□□□ -0.42
COL6A3-206ENST00000409809 SLC1A3P43003 542 aa12.4□□□□□ -0.42
COL6A3-206ENST00000409809 TM9SF4Q92544 642 aa12.4□□□□□ -0.42
COL6A3-206ENST00000409809 RBPMSQ93062 196 aaKnown RBP12.4□□□□□ -0.42
COL6A3-206ENST00000409809 ZNF587Q96SQ5 575 aaPredicted RBP12.4□□□□□ -0.42
COL6A3-206ENST00000409809 SLC6A7Q99884 636 aa12.4□□□□□ -0.42
COL6A3-206ENST00000409809 RAI2Q9Y5P3 530 aa12.4□□□□□ -0.42
COL6A3-206ENST00000409809 INSRRP14616 1297 aa12.4□□□□□ -0.42
COL6A3-206ENST00000409809 MTNR1AP48039 350 aa12.4□□□□□ -0.42
COL6A3-206ENST00000409809 ZNF763Q0D2J5 394 aa12.4□□□□□ -0.42
COL6A3-206ENST00000409809 RBMS2Q15434 407 aaKnown RBP12.4□□□□□ -0.42
COL6A3-206ENST00000409809 ZNF783Q6ZMS7 281 aa12.4□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms