RNA–Protein interactions for RNA: ENST00000404909.5

RTN4-208, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,102 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-208ENST00000404909 DOK4Q8TEW6 326 aa3.5□□□□□ -1.85
RTN4-208ENST00000404909 KLHL6Q8WZ60 621 aa3.5□□□□□ -1.85
RTN4-208ENST00000404909 FIG4Q92562 907 aa3.5□□□□□ -1.85
RTN4-208ENST00000404909 NCLNQ969V3 563 aa3.5□□□□□ -1.85
RTN4-208ENST00000404909 CNRIP1Q96F85 164 aaPredicted RBP3.5□□□□□ -1.85
RTN4-208ENST00000404909 PEX11GQ96HA9 241 aa3.5□□□□□ -1.85
RTN4-208ENST00000404909 CCDC74BQ96LY2 380 aa3.5□□□□□ -1.85
RTN4-208ENST00000404909 C10orf90Q96M02 699 aa3.5□□□□□ -1.85
RTN4-208ENST00000404909 DPH2Q9BQC3 489 aaPredicted RBP3.5□□□□□ -1.85
RTN4-208ENST00000404909 EDEM2Q9BV94 578 aa3.5□□□□□ -1.85
RTN4-208ENST00000404909 CUTCQ9NTM9 273 aa3.5□□□□□ -1.85
RTN4-208ENST00000404909 GIMAP4Q9NUV9 329 aa3.5□□□□□ -1.85
RTN4-208ENST00000404909 KCMF1Q9P0J7 381 aa3.5□□□□□ -1.85
RTN4-208ENST00000404909 NCDNQ9UBB6 729 aa3.5□□□□□ -1.85
RTN4-208ENST00000404909 SUCOQ9UBS9 1254 aaKnown RBP3.5□□□□□ -1.85
RTN4-208ENST00000404909 RAPGEFL1Q9UHV5 662 aa3.5□□□□□ -1.85
RTN4-208ENST00000404909 PHF11Q9UIL8 331 aa3.5□□□□□ -1.85
RTN4-208ENST00000404909 BTNL2Q9UIR0 455 aa3.5□□□□□ -1.85
RTN4-208ENST00000404909 SERTAD3Q9UJW9 196 aa3.5□□□□□ -1.85
RTN4-208ENST00000404909 PSME2Q9UL46 239 aa3.5□□□□□ -1.85
RTN4-208ENST00000404909 NEUROG3Q9Y4Z2 214 aa3.5□□□□□ -1.85
RTN4-208ENST00000404909 V9GYQ6 96 aa3.5□□□□□ -1.85
RTN4-208ENST00000404909 PCNX2A6NKB5 2137 aa3.5□□□□□ -1.85
RTN4-208ENST00000404909 RNF103-CHMP3A0A140T963 221 aa3.5□□□□□ -1.85
RTN4-208ENST00000404909 C4orf47A7E2U8 309 aa3.5□□□□□ -1.85
RTN4-208ENST00000404909 CDX4O14627 284 aaPredicted RBP3.5□□□□□ -1.85
RTN4-208ENST00000404909 FLRT2O43155 660 aa3.5□□□□□ -1.85
RTN4-208ENST00000404909 CHST10O43529 356 aa3.5□□□□□ -1.85
RTN4-208ENST00000404909 FOXS1O43638 330 aa3.5□□□□□ -1.85
RTN4-208ENST00000404909 B4GALT2O60909 372 aa3.5□□□□□ -1.85
RTN4-208ENST00000404909 GMNNO75496 209 aa3.5□□□□□ -1.85
RTN4-208ENST00000404909 SCELO95171 688 aa3.5□□□□□ -1.85
RTN4-208ENST00000404909 ZNF806P0C7X5 589 aa3.5□□□□□ -1.85
RTN4-208ENST00000404909 MPIP34949 423 aa3.5□□□□□ -1.85
RTN4-208ENST00000404909 AVPR1BP47901 424 aa3.5□□□□□ -1.85
RTN4-208ENST00000404909 GABRA4P48169 554 aa3.5□□□□□ -1.85
RTN4-208ENST00000404909 CDK9P50750 372 aaKnown RBP3.5□□□□□ -1.85
RTN4-208ENST00000404909 XKP51811 444 aa3.5□□□□□ -1.85
RTN4-208ENST00000404909 HNRNPFP52597 415 aaKnown RBP3.5□□□□□ -1.85
RTN4-208ENST00000404909 ITGA1P56199 1179 aa3.5□□□□□ -1.85
RTN4-208ENST00000404909 RPS26P62854 115 aaKnown RBP3.5□□□□□ -1.85
RTN4-208ENST00000404909 SKP1P63208 163 aa3.5□□□□□ -1.85
RTN4-208ENST00000404909 TCF15Q12870 199 aa3.5□□□□□ -1.85
RTN4-208ENST00000404909 TP53BP2Q13625 1128 aa3.5□□□□□ -1.85
RTN4-208ENST00000404909 RCN1Q15293 331 aa3.5□□□□□ -1.85
RTN4-208ENST00000404909 PRSS42Q7Z5A4 293 aa3.5□□□□□ -1.85
RTN4-208ENST00000404909 B3GNT8Q7Z7M8 397 aa3.5□□□□□ -1.85
RTN4-208ENST00000404909 RNF130Q86XS8 419 aa3.5□□□□□ -1.85
RTN4-208ENST00000404909 CA13Q8N1Q1 262 aa3.5□□□□□ -1.85
RTN4-208ENST00000404909 SUMF1Q8NBK3 374 aa3.5□□□□□ -1.85
RTN4-208ENST00000404909 OR4D9Q8NGE8 314 aa3.5□□□□□ -1.85
RTN4-208ENST00000404909 MAL2Q969L2 176 aa3.5□□□□□ -1.85
RTN4-208ENST00000404909 RSRC1Q96IZ7 334 aaKnown RBP3.5□□□□□ -1.85
RTN4-208ENST00000404909 SLC41A2Q96JW4 573 aa3.5□□□□□ -1.85
RTN4-208ENST00000404909 ZNF583Q96ND8 569 aa3.5□□□□□ -1.85
RTN4-208ENST00000404909 AMDHD1Q96NU7 426 aa3.5□□□□□ -1.85
RTN4-208ENST00000404909 OR6C1Q96RD1 312 aa3.5□□□□□ -1.85
RTN4-208ENST00000404909 LRFN3Q9BTN0 628 aa3.5□□□□□ -1.85
RTN4-208ENST00000404909 NDC1Q9BTX1 674 aa3.5□□□□□ -1.85
RTN4-208ENST00000404909 GLIPR2Q9H4G4 154 aa3.5□□□□□ -1.85
RTN4-208ENST00000404909 ZNF768Q9H5H4 540 aaKnown RBP3.5□□□□□ -1.85
RTN4-208ENST00000404909 CXorf36Q9H7Y0 433 aa3.5□□□□□ -1.85
RTN4-208ENST00000404909 KAT8Q9H7Z6 458 aaKnown RBP3.5□□□□□ -1.85
RTN4-208ENST00000404909 ANKRA2Q9H9E1 313 aa3.5□□□□□ -1.85
RTN4-208ENST00000404909 FANCEQ9HB96 536 aa3.5□□□□□ -1.85
RTN4-208ENST00000404909 SEMA4GQ9NTN9 838 aa3.5□□□□□ -1.85
RTN4-208ENST00000404909 MS4A12Q9NXJ0 267 aa3.5□□□□□ -1.85
RTN4-208ENST00000404909 EHD3Q9NZN3 535 aa3.5□□□□□ -1.85
RTN4-208ENST00000404909 ZNF282Q9UDV7 671 aaPredicted RBP3.5□□□□□ -1.85
RTN4-208ENST00000404909 TRBV5-3A0A0A0MS03 114 aa3.5□□□□□ -1.85
RTN4-208ENST00000404909 ACOT8O14734 319 aa3.5□□□□□ -1.85
RTN4-208ENST00000404909 ARPC2O15144 300 aa3.5□□□□□ -1.85
RTN4-208ENST00000404909 ZNF749O43361 778 aa3.5□□□□□ -1.85
RTN4-208ENST00000404909 GDF9O60383 454 aa3.5□□□□□ -1.85
RTN4-208ENST00000404909 BCAS2O75934 225 aaPredicted RBP3.5□□□□□ -1.85
RTN4-208ENST00000404909 PSMG1O95456 288 aa3.5□□□□□ -1.85
RTN4-208ENST00000404909 NUDT7P0C024 238 aa3.5□□□□□ -1.85
RTN4-208ENST00000404909 HSD17B1P14061 328 aa3.5□□□□□ -1.85
RTN4-208ENST00000404909 CSNK2A2P19784 350 aaPredicted RBP3.5□□□□□ -1.85
RTN4-208ENST00000404909 CSTF2P33240 577 aaKnown RBP eCLIP3.5□□□□□ -1.85
RTN4-208ENST00000404909 PCBP4P57723 403 aaKnown RBP3.5□□□□□ -1.85
RTN4-208ENST00000404909 EEFSECP57772 596 aaKnown RBP3.5□□□□□ -1.85
RTN4-208ENST00000404909 MRPS35P82673 323 aaKnown RBP3.5□□□□□ -1.85
RTN4-208ENST00000404909 FOLH1Q04609 750 aa3.5□□□□□ -1.85
RTN4-208ENST00000404909 DUSP2Q05923 314 aa3.5□□□□□ -1.85
RTN4-208ENST00000404909 LRRC74AQ0VAA2 488 aa3.5□□□□□ -1.85
RTN4-208ENST00000404909 SLC13A2Q13183 592 aa3.5□□□□□ -1.85
RTN4-208ENST00000404909 FAM53BQ14153 422 aa3.5□□□□□ -1.85
RTN4-208ENST00000404909 FAM214AQ32MH5 1076 aa3.5□□□□□ -1.85
RTN4-208ENST00000404909 AASDHQ4L235 1098 aaPredicted RBP3.5□□□□□ -1.85
RTN4-208ENST00000404909 MFSD4BQ5TF39 518 aa3.5□□□□□ -1.85
RTN4-208ENST00000404909 OR52E8Q6IFG1 317 aa3.5□□□□□ -1.85
RTN4-208ENST00000404909 TMEM107Q6UX40 140 aa3.5□□□□□ -1.85
RTN4-208ENST00000404909 SLC44A2Q8IWA5 706 aaPredicted RBP3.5□□□□□ -1.85
RTN4-208ENST00000404909 PRSS58Q8IYP2 241 aa3.5□□□□□ -1.85
RTN4-208ENST00000404909 CARFQ8N187 725 aa3.5□□□□□ -1.85
RTN4-208ENST00000404909 TMEM52Q8NDY8 209 aa3.5□□□□□ -1.85
RTN4-208ENST00000404909 OR4K14Q8NGD5 310 aa3.5□□□□□ -1.85
RTN4-208ENST00000404909 OR9A2Q8NGT5 310 aa3.5□□□□□ -1.85
RTN4-208ENST00000404909 ZDHHC19Q8WVZ1 309 aaPredicted RBP3.5□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms