RNA–Protein interactions for RNA: ENST00000397109.7

SEC13-208, Transcript of SEC13 homolog, nuclear pore and COPII coat complex component, humanhuman

TSL 1 (best) BASIC

Gene SEC13, Length 1,467 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC13-208ENST00000397109 PPT2Q9UMR5 302 aa13.63□□□□□ -0.23
SEC13-208ENST00000397109 SVILO95425 2214 aa13.63□□□□□ -0.23
SEC13-208ENST00000397109 FLNCQ14315 2725 aa13.63□□□□□ -0.23
SEC13-208ENST00000397109 TMEM114B3SHH9 223 aa13.62□□□□□ -0.23
SEC13-208ENST00000397109 FOXE1O00358 373 aaPredicted RBP13.62□□□□□ -0.23
SEC13-208ENST00000397109 CTNSO60931 367 aa13.62□□□□□ -0.23
SEC13-208ENST00000397109 GNLYP22749 145 aa13.62□□□□□ -0.23
SEC13-208ENST00000397109 NAA20P61599 178 aa13.62□□□□□ -0.23
SEC13-208ENST00000397109 BST1Q10588 318 aa13.62□□□□□ -0.23
SEC13-208ENST00000397109 ZRSR2Q15696 482 aaKnown RBP13.62□□□□□ -0.23
SEC13-208ENST00000397109 INAQ16352 499 aa13.62□□□□□ -0.23
SEC13-208ENST00000397109 ZNF793Q6ZN11 406 aa13.62□□□□□ -0.23
SEC13-208ENST00000397109 WDR75Q8IWA0 830 aaKnown RBP13.62□□□□□ -0.23
SEC13-208ENST00000397109 LRRC37BQ96QE4 947 aa13.62□□□□□ -0.23
SEC13-208ENST00000397109 MS4A12Q9NXJ0 267 aa13.62□□□□□ -0.23
SEC13-208ENST00000397109 RNF11Q9Y3C5 154 aa13.62□□□□□ -0.23
SEC13-208ENST00000397109 A8MUA0 341 aa13.61□□□□□ -0.23
SEC13-208ENST00000397109 RTCAO00442 366 aaKnown RBP13.61□□□□□ -0.23
SEC13-208ENST00000397109 OR7A17O14581 309 aa13.61□□□□□ -0.23
SEC13-208ENST00000397109 HNRNPCL1O60812 293 aaKnown RBP13.61□□□□□ -0.23
SEC13-208ENST00000397109 TRIM13O60858 407 aa13.61□□□□□ -0.23
SEC13-208ENST00000397109 SH3BGRLO75368 114 aa13.61□□□□□ -0.23
SEC13-208ENST00000397109 IMPDH1P20839 514 aa13.61□□□□□ -0.23
SEC13-208ENST00000397109 SERPINB5P36952 375 aa13.61□□□□□ -0.23
SEC13-208ENST00000397109 RPS13P62277 151 aaKnown RBP13.61□□□□□ -0.23
SEC13-208ENST00000397109 CUL3Q13618 768 aa13.61□□□□□ -0.23
SEC13-208ENST00000397109 SERTAD2Q14140 314 aa13.61□□□□□ -0.23
SEC13-208ENST00000397109 UBAP2LQ14157 1087 aaKnown RBP13.61□□□□□ -0.23
SEC13-208ENST00000397109 MILR1Q7Z6M3 343 aa13.61□□□□□ -0.23
SEC13-208ENST00000397109 RPS19BP1Q86WX3 136 aaKnown RBP13.61□□□□□ -0.23
SEC13-208ENST00000397109 KIRREL3Q8IZU9 778 aa13.61□□□□□ -0.23
SEC13-208ENST00000397109 TMEM132CQ8N3T6 1108 aa13.61□□□□□ -0.23
SEC13-208ENST00000397109 ZCCHC7Q8N3Z6 543 aaKnown RBP13.61□□□□□ -0.23
SEC13-208ENST00000397109 AMER2Q8N7J2 671 aa13.61□□□□□ -0.23
SEC13-208ENST00000397109 NFAM1Q8NET5 270 aaPredicted RBP13.61□□□□□ -0.23
SEC13-208ENST00000397109 B3GNT7Q8NFL0 401 aa13.61□□□□□ -0.23
SEC13-208ENST00000397109 WDR20Q8TBZ3 569 aa13.61□□□□□ -0.23
SEC13-208ENST00000397109 TMEM237Q96Q45 408 aa13.61□□□□□ -0.23
SEC13-208ENST00000397109 MAPKAP1Q9BPZ7 522 aa13.61□□□□□ -0.23
SEC13-208ENST00000397109 ADAP2Q9NPF8 381 aa13.61□□□□□ -0.23
SEC13-208ENST00000397109 PNO1Q9NRX1 252 aaKnown RBP13.61□□□□□ -0.23
SEC13-208ENST00000397109 PHF11Q9UIL8 331 aa13.61□□□□□ -0.23
SEC13-208ENST00000397109 SLC12A4Q9UP95 1085 aa13.61□□□□□ -0.23
SEC13-208ENST00000397109 POLEQ07864 2286 aa13.61□□□□□ -0.23
SEC13-208ENST00000397109 CLEC18AA5D8T8 446 aa13.61□□□□□ -0.23
SEC13-208ENST00000397109 SAP18O00422 153 aaKnown RBP13.61□□□□□ -0.23
SEC13-208ENST00000397109 PRAMEF2O60811 474 aa13.61□□□□□ -0.23
SEC13-208ENST00000397109 MYO1DO94832 1006 aa13.61□□□□□ -0.23
SEC13-208ENST00000397109 OTCP00480 354 aa13.61□□□□□ -0.23
SEC13-208ENST00000397109 CPN2P22792 545 aa13.61□□□□□ -0.23
SEC13-208ENST00000397109 TLX1P31314 330 aaPredicted RBP13.61□□□□□ -0.23
SEC13-208ENST00000397109 HNRNPFP52597 415 aaKnown RBP13.61□□□□□ -0.23
SEC13-208ENST00000397109 ARFIP2P53365 341 aa13.61□□□□□ -0.23
SEC13-208ENST00000397109 STX4Q12846 297 aa13.61□□□□□ -0.23
SEC13-208ENST00000397109 BNIP1Q12981 228 aa13.61□□□□□ -0.23
SEC13-208ENST00000397109 TRAF3Q13114 568 aa13.61□□□□□ -0.23
SEC13-208ENST00000397109 SLAMF1Q13291 335 aa13.61□□□□□ -0.23
SEC13-208ENST00000397109 BIKQ13323 160 aa13.61□□□□□ -0.23
SEC13-208ENST00000397109 ELAVL1Q15717 326 aaKnown RBP13.61□□□□□ -0.23
SEC13-208ENST00000397109 GGTA1PQ4G0N0 100 aa13.61□□□□□ -0.23
SEC13-208ENST00000397109 ZNF678Q5SXM1 525 aa13.61□□□□□ -0.23
SEC13-208ENST00000397109 LIPMQ5VYY2 423 aa13.61□□□□□ -0.23
SEC13-208ENST00000397109 FCRLBQ6BAA4 426 aa13.61□□□□□ -0.23
SEC13-208ENST00000397109 FAM180AQ6UWF9 173 aa13.61□□□□□ -0.23
SEC13-208ENST00000397109 CLEC18BQ6UXF7 455 aa13.61□□□□□ -0.23
SEC13-208ENST00000397109 C10orf107Q8IVU9 208 aa13.61□□□□□ -0.23
SEC13-208ENST00000397109 BEST3Q8N1M1 668 aa13.61□□□□□ -0.23
SEC13-208ENST00000397109 RNF175Q8N4F7 328 aa13.61□□□□□ -0.23
SEC13-208ENST00000397109 FAM26EQ8N5C1 309 aa13.61□□□□□ -0.23
SEC13-208ENST00000397109 HORMAD2Q8N7B1 307 aa13.61□□□□□ -0.23
SEC13-208ENST00000397109 BCORP1Q8N888 145 aa13.61□□□□□ -0.23
SEC13-208ENST00000397109 CLEC18CQ8NCF0 446 aa13.61□□□□□ -0.23
SEC13-208ENST00000397109 TMEM52Q8NDY8 209 aa13.61□□□□□ -0.23
SEC13-208ENST00000397109 OR52B6Q8NGF0 335 aa13.61□□□□□ -0.23
SEC13-208ENST00000397109 PIWIL2Q8TC59 973 aaKnown RBP13.61□□□□□ -0.23
SEC13-208ENST00000397109 GRHL3Q8TE85 626 aa13.61□□□□□ -0.23
SEC13-208ENST00000397109 ZNF483Q8TF39 744 aaPredicted RBP13.61□□□□□ -0.23
SEC13-208ENST00000397109 FAR1Q8WVX9 515 aa13.61□□□□□ -0.23
SEC13-208ENST00000397109 STON2Q8WXE9 905 aa13.61□□□□□ -0.23
SEC13-208ENST00000397109 NSUN5Q96P11 429 aaKnown RBP13.61□□□□□ -0.23
SEC13-208ENST00000397109 CSF3RQ99062 836 aa13.61□□□□□ -0.23
SEC13-208ENST00000397109 SERPINI1Q99574 410 aa13.61□□□□□ -0.23
SEC13-208ENST00000397109 UTP23Q9BRU9 249 aaKnown RBP13.61□□□□□ -0.23
SEC13-208ENST00000397109 DEFB126Q9BYW3 111 aa13.61□□□□□ -0.23
SEC13-208ENST00000397109 CDCP1Q9H5V8 836 aa13.61□□□□□ -0.23
SEC13-208ENST00000397109 ZBTB26Q9HCK0 441 aa13.61□□□□□ -0.23
SEC13-208ENST00000397109 SAR1AQ9NR31 198 aa13.61□□□□□ -0.23
SEC13-208ENST00000397109 PPIEQ9UNP9 301 aaKnown RBP13.61□□□□□ -0.23
SEC13-208ENST00000397109 NTNG1Q9Y2I2 539 aa13.61□□□□□ -0.23
SEC13-208ENST00000397109 PCDHGB6Q9Y5F9 930 aa13.61□□□□□ -0.23
SEC13-208ENST00000397109 CLDN16Q9Y5I7 305 aa13.61□□□□□ -0.23
SEC13-208ENST00000397109 LRRK2Q5S007 2527 aa13.61□□□□□ -0.23
SEC13-208ENST00000397109 DOPEY2Q9Y3R5 2298 aa13.6□□□□□ -0.23
SEC13-208ENST00000397109 PLPP1O14494 284 aa13.6□□□□□ -0.23
SEC13-208ENST00000397109 DNAJC8O75937 253 aaPredicted RBP13.6□□□□□ -0.23
SEC13-208ENST00000397109 SEMA3DO95025 777 aa13.6□□□□□ -0.23
SEC13-208ENST00000397109 CBX6O95503 412 aa13.6□□□□□ -0.23
SEC13-208ENST00000397109 F10P00742 488 aa13.6□□□□□ -0.23
SEC13-208ENST00000397109 IFNA16P05015 189 aa13.6□□□□□ -0.23
SEC13-208ENST00000397109 UQCRFS1P47985 274 aa13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms