RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 ATP6V1E2Q96A05 226 aa20.14■□□□□ 0.81
CCDC28B-201ENST00000373602 SCYL1Q96KG9 808 aa20.14■□□□□ 0.81
CCDC28B-201ENST00000373602 DGAT2Q96PD7 388 aa20.14■□□□□ 0.81
CCDC28B-201ENST00000373602 CDK15Q96Q40 435 aa20.14■□□□□ 0.81
CCDC28B-201ENST00000373602 NTMT1Q9BV86 223 aa20.14■□□□□ 0.81
CCDC28B-201ENST00000373602 HPF1Q9NWY4 346 aa20.14■□□□□ 0.81
CCDC28B-201ENST00000373602 LYARQ9NX58 379 aaKnown RBP20.14■□□□□ 0.81
CCDC28B-201ENST00000373602 PCTPQ9UKL6 214 aa20.14■□□□□ 0.81
CCDC28B-201ENST00000373602 ENTPD4Q9Y227 616 aa20.14■□□□□ 0.81
CCDC28B-201ENST00000373602 ASB4Q9Y574 426 aa20.14■□□□□ 0.81
CCDC28B-201ENST00000373602 NOTCH2Q04721 2471 aa20.13■□□□□ 0.81
CCDC28B-201ENST00000373602 CACNA1DQ01668 2161 aa20.13■□□□□ 0.81
CCDC28B-201ENST00000373602 TMPRSS11DO60235 418 aa20.13■□□□□ 0.81
CCDC28B-201ENST00000373602 SMIM24O75264 130 aa20.13■□□□□ 0.81
CCDC28B-201ENST00000373602 EEDO75530 441 aaKnown RBP20.13■□□□□ 0.81
CCDC28B-201ENST00000373602 OR6B1O95007 311 aa20.13■□□□□ 0.81
CCDC28B-201ENST00000373602 BUD31P41223 144 aaPredicted RBP20.13■□□□□ 0.81
CCDC28B-201ENST00000373602 SOX3P41225 446 aa20.13■□□□□ 0.81
CCDC28B-201ENST00000373602 CCNG1P51959 295 aa20.13■□□□□ 0.81
CCDC28B-201ENST00000373602 GPR85P60893 370 aa20.13■□□□□ 0.81
CCDC28B-201ENST00000373602 HSF1Q00613 529 aa20.13■□□□□ 0.81
CCDC28B-201ENST00000373602 FOLH1Q04609 750 aa20.13■□□□□ 0.81
CCDC28B-201ENST00000373602 IL20RBQ6UXL0 311 aa20.13■□□□□ 0.81
CCDC28B-201ENST00000373602 BNC2Q6ZN30 1099 aaPredicted RBP20.13■□□□□ 0.81
CCDC28B-201ENST00000373602 PSD4Q8NDX1 1056 aa20.13■□□□□ 0.81
CCDC28B-201ENST00000373602 KIF18AQ8NI77 898 aa20.13■□□□□ 0.81
CCDC28B-201ENST00000373602 SREK1Q8WXA9 508 aaKnown RBP20.13■□□□□ 0.81
CCDC28B-201ENST00000373602 RBM18Q96H35 190 aaKnown RBP20.13■□□□□ 0.81
CCDC28B-201ENST00000373602 MRPL57Q9BQC6 102 aaKnown RBP20.13■□□□□ 0.81
CCDC28B-201ENST00000373602 ZBTB26Q9HCK0 441 aa20.13■□□□□ 0.81
CCDC28B-201ENST00000373602 COPS7AQ9UBW8 275 aa20.13■□□□□ 0.81
CCDC28B-201ENST00000373602 NFU1Q9UMS0 254 aa20.13■□□□□ 0.81
CCDC28B-201ENST00000373602 KLF2Q9Y5W3 355 aaPredicted RBP20.13■□□□□ 0.81
CCDC28B-201ENST00000373602 PRSS44E7EML9 344 aa20.12■□□□□ 0.81
CCDC28B-201ENST00000373602 TFECO14948 347 aaPredicted RBP20.12■□□□□ 0.81
CCDC28B-201ENST00000373602 PRKRAO75569 313 aaKnown RBP20.12■□□□□ 0.81
CCDC28B-201ENST00000373602 SEMA3DO95025 777 aa20.12■□□□□ 0.81
CCDC28B-201ENST00000373602 IGKV3-11P04433 115 aa20.12■□□□□ 0.81
CCDC28B-201ENST00000373602 ABHD2P08910 425 aa20.12■□□□□ 0.81
CCDC28B-201ENST00000373602 SNRPAP09012 282 aaKnown RBP20.12■□□□□ 0.81
CCDC28B-201ENST00000373602 ESRRAP11474 423 aaPredicted RBP20.12■□□□□ 0.81
CCDC28B-201ENST00000373602 ABOP16442 354 aa20.12■□□□□ 0.81
CCDC28B-201ENST00000373602 ARL1P40616 181 aaPredicted RBP20.12■□□□□ 0.81
CCDC28B-201ENST00000373602 RFC3P40938 356 aa20.12■□□□□ 0.81
CCDC28B-201ENST00000373602 ADORA2A-AS1P86434 159 aa20.12■□□□□ 0.81
CCDC28B-201ENST00000373602 PLIN5Q00G26 463 aa20.12■□□□□ 0.81
CCDC28B-201ENST00000373602 TRAF3Q13114 568 aa20.12■□□□□ 0.81
CCDC28B-201ENST00000373602 SP5Q6BEB4 398 aaPredicted RBP20.12■□□□□ 0.81
CCDC28B-201ENST00000373602 DGAT2L6Q6ZPD8 337 aa20.12■□□□□ 0.81
CCDC28B-201ENST00000373602 FGD2Q7Z6J4 655 aa20.12■□□□□ 0.81
CCDC28B-201ENST00000373602 NUDT13Q86X67 352 aa20.12■□□□□ 0.81
CCDC28B-201ENST00000373602 CEP112Q8N8E3 955 aa20.12■□□□□ 0.81
CCDC28B-201ENST00000373602 PPWD1Q96BP3 646 aaKnown RBP20.12■□□□□ 0.81
CCDC28B-201ENST00000373602 SENP5Q96HI0 755 aaPredicted RBP20.12■□□□□ 0.81
CCDC28B-201ENST00000373602 NSUN5Q96P11 429 aaKnown RBP20.12■□□□□ 0.81
CCDC28B-201ENST00000373602 SERPINI1Q99574 410 aa20.12■□□□□ 0.81
CCDC28B-201ENST00000373602 MRPL46Q9H2W6 279 aaKnown RBP20.12■□□□□ 0.81
CCDC28B-201ENST00000373602 DEPPQ9NTK1 212 aa20.12■□□□□ 0.81
CCDC28B-201ENST00000373602 GTF3C1Q12789 2109 aa20.11■□□□□ 0.81
CCDC28B-201ENST00000373602 EXOC1LA0A1B0GW35 172 aa20.11■□□□□ 0.81
CCDC28B-201ENST00000373602 A0A1W2PR48 441 aa20.11■□□□□ 0.81
CCDC28B-201ENST00000373602 ZNHIT1O43257 154 aa20.11■□□□□ 0.81
CCDC28B-201ENST00000373602 GPR75O95800 540 aa20.11■□□□□ 0.81
CCDC28B-201ENST00000373602 RPS17P08708 135 aaKnown RBP20.11■□□□□ 0.81
CCDC28B-201ENST00000373602 SBK3P0C264 359 aa20.11■□□□□ 0.81
CCDC28B-201ENST00000373602 FAM58BPP0C7Q3 252 aa20.11■□□□□ 0.81
CCDC28B-201ENST00000373602 ALOX15P16050 662 aaPredicted RBP20.11■□□□□ 0.81
CCDC28B-201ENST00000373602 PTGER1P34995 402 aa20.11■□□□□ 0.81
CCDC28B-201ENST00000373602 GGTA1PQ4G0N0 100 aa20.11■□□□□ 0.81
CCDC28B-201ENST00000373602 C10orf62Q5T681 223 aaPredicted RBP20.11■□□□□ 0.81
CCDC28B-201ENST00000373602 FRG2Q64ET8 278 aa20.11■□□□□ 0.81
CCDC28B-201ENST00000373602 CYP20A1Q6UW02 462 aa20.11■□□□□ 0.81
CCDC28B-201ENST00000373602 ST13P4Q8IZP2 240 aaPredicted RBP20.11■□□□□ 0.81
CCDC28B-201ENST00000373602 TMEM151AQ8N4L1 468 aa20.11■□□□□ 0.81
CCDC28B-201ENST00000373602 NUBPLQ8TB37 319 aa20.11■□□□□ 0.81
CCDC28B-201ENST00000373602 MTFMTQ96DP5 389 aaKnown RBP20.11■□□□□ 0.81
CCDC28B-201ENST00000373602 ART5Q96L15 291 aa20.11■□□□□ 0.81
CCDC28B-201ENST00000373602 FRG2BQ96QU4 278 aa20.11■□□□□ 0.81
CCDC28B-201ENST00000373602 MEMO1Q9Y316 297 aa20.11■□□□□ 0.81
CCDC28B-201ENST00000373602 WASHC1A8K0Z3 465 aa20.1■□□□□ 0.81
CCDC28B-201ENST00000373602 DYRK3O43781 588 aa20.1■□□□□ 0.81
CCDC28B-201ENST00000373602 HS6ST1O60243 411 aa20.1■□□□□ 0.81
CCDC28B-201ENST00000373602 ZNF354AO60765 605 aaPredicted RBP20.1■□□□□ 0.81
CCDC28B-201ENST00000373602 NR2F6P10588 404 aa20.1■□□□□ 0.81
CCDC28B-201ENST00000373602 GCAP28676 217 aa20.1■□□□□ 0.81
CCDC28B-201ENST00000373602 MPEG1Q2M385 716 aa20.1■□□□□ 0.81
CCDC28B-201ENST00000373602 ZNF750Q32MQ0 723 aa20.1■□□□□ 0.81
CCDC28B-201ENST00000373602 CMPK2Q5EBM0 449 aa20.1■□□□□ 0.81
CCDC28B-201ENST00000373602 LGSNQ5TDP6 509 aa20.1■□□□□ 0.81
CCDC28B-201ENST00000373602 XKRXQ6PP77 449 aa20.1■□□□□ 0.81
CCDC28B-201ENST00000373602 TIFABQ6ZNK6 161 aa20.1■□□□□ 0.81
CCDC28B-201ENST00000373602 RTL4Q6ZR62 310 aa20.1■□□□□ 0.81
CCDC28B-201ENST00000373602 TRMT10CQ7L0Y3 403 aaKnown RBP20.1■□□□□ 0.81
CCDC28B-201ENST00000373602 IFT20Q8IY31 132 aa20.1■□□□□ 0.81
CCDC28B-201ENST00000373602 FBXL20Q96IG2 436 aa20.1■□□□□ 0.81
CCDC28B-201ENST00000373602 SGCZQ96LD1 299 aa20.1■□□□□ 0.81
CCDC28B-201ENST00000373602 PELOQ9BRX2 385 aaKnown RBP20.1■□□□□ 0.81
CCDC28B-201ENST00000373602 C1QTNF3Q9BXJ4 246 aa20.1■□□□□ 0.81
CCDC28B-201ENST00000373602 SEMA4BQ9NPR2 832 aaPredicted RBP20.1■□□□□ 0.81
CCDC28B-201ENST00000373602 PINLYPA6NC86 204 aa20.09■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms