RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 ZSCAN9O15535 394 aaPredicted RBP13.01□□□□□ -0.33
PTPRF-202ENST00000372405 NR2F6P10588 404 aa13.01□□□□□ -0.33
PTPRF-202ENST00000372405 MAGEA2P43356 314 aa13.01□□□□□ -0.33
PTPRF-202ENST00000372405 NCBP2P52298 156 aaKnown RBP eCLIP13.01□□□□□ -0.332e-6■■□□□ 12.6
PTPRF-202ENST00000372405 TNFRSF17Q02223 184 aa13.01□□□□□ -0.33
PTPRF-202ENST00000372405 CEBPEQ15744 281 aa13.01□□□□□ -0.33
PTPRF-202ENST00000372405 KLHL35Q6PF15 583 aa13.01□□□□□ -0.33
PTPRF-202ENST00000372405 TBPL2Q6SJ96 375 aa13.01□□□□□ -0.33
PTPRF-202ENST00000372405 ABHD13Q7L211 337 aa13.01□□□□□ -0.33
PTPRF-202ENST00000372405 C6orf120Q7Z4R8 191 aa13.01□□□□□ -0.33
PTPRF-202ENST00000372405 CCDC116Q8IYX3 515 aa13.01□□□□□ -0.33
PTPRF-202ENST00000372405 HORMAD2Q8N7B1 307 aa13.01□□□□□ -0.33
PTPRF-202ENST00000372405 NFKBIDQ8NI38 313 aa13.01□□□□□ -0.33
PTPRF-202ENST00000372405 EDAQ92838 391 aa13.01□□□□□ -0.33
PTPRF-202ENST00000372405 SAMD4AQ9UPU9 718 aaKnown RBP13.01□□□□□ -0.33
PTPRF-202ENST00000372405 A0A0C4DFX4 3053 aa13.01□□□□□ -0.33
PTPRF-202ENST00000372405 WDFY4Q6ZS81 3184 aa13.01□□□□□ -0.33
PTPRF-202ENST00000372405 A0A1B0GTW7 788 aa13.01□□□□□ -0.33
PTPRF-202ENST00000372405 URADA6NGE7 173 aa13.01□□□□□ -0.33
PTPRF-202ENST00000372405 EIF4E1BA6NMX2 242 aaKnown RBP13.01□□□□□ -0.33
PTPRF-202ENST00000372405 H0YJX3 145 aa13.01□□□□□ -0.33
PTPRF-202ENST00000372405 ARAFP10398 606 aa13.01□□□□□ -0.33
PTPRF-202ENST00000372405 MYF5P13349 255 aa13.01□□□□□ -0.33
PTPRF-202ENST00000372405 NTSP30990 170 aa13.01□□□□□ -0.33
PTPRF-202ENST00000372405 FEN1P39748 380 aaKnown RBP13.01□□□□□ -0.33
PTPRF-202ENST00000372405 CCT3P49368 545 aaKnown RBP13.01□□□□□ -0.33
PTPRF-202ENST00000372405 IST1P53990 364 aa13.01□□□□□ -0.33
PTPRF-202ENST00000372405 MANEAQ5SRI9 462 aa13.01□□□□□ -0.33
PTPRF-202ENST00000372405 C6orf132Q5T0Z8 1188 aa13.01□□□□□ -0.33
PTPRF-202ENST00000372405 C6orf52Q5T4I8 152 aa13.01□□□□□ -0.33
PTPRF-202ENST00000372405 NKAIN2Q5VXU1 208 aa13.01□□□□□ -0.33
PTPRF-202ENST00000372405 EIF3MQ7L2H7 374 aaKnown RBP13.01□□□□□ -0.33
PTPRF-202ENST00000372405 SLC35F3Q8IY50 421 aa13.01□□□□□ -0.33
PTPRF-202ENST00000372405 DNAJC22Q8N4W6 341 aa13.01□□□□□ -0.33
PTPRF-202ENST00000372405 OR5T3Q8NGG3 340 aa13.01□□□□□ -0.33
PTPRF-202ENST00000372405 VPS50Q96JG6 964 aa13.01□□□□□ -0.33
PTPRF-202ENST00000372405 BBS4Q96RK4 519 aa13.01□□□□□ -0.33
PTPRF-202ENST00000372405 ROGDIQ9GZN7 287 aa13.01□□□□□ -0.33
PTPRF-202ENST00000372405 AP4B1Q9Y6B7 739 aa13.01□□□□□ -0.33
PTPRF-202ENST00000372405 CCDC88CQ9P219 2028 aa13.01□□□□□ -0.33
PTPRF-202ENST00000372405 RP1P56715 2156 aa13.01□□□□□ -0.33
PTPRF-202ENST00000372405 FRYLO94915 3013 aa13.01□□□□□ -0.33
PTPRF-202ENST00000372405 CASC3O15234 703 aaKnown RBP13□□□□□ -0.33
PTPRF-202ENST00000372405 B3GALT2O43825 422 aa13□□□□□ -0.33
PTPRF-202ENST00000372405 DEAF1O75398 565 aaPredicted RBP13□□□□□ -0.33
PTPRF-202ENST00000372405 MED26O95402 600 aa13□□□□□ -0.33
PTPRF-202ENST00000372405 GABRA4P48169 554 aa13□□□□□ -0.33
PTPRF-202ENST00000372405 DSTNP60981 165 aa13□□□□□ -0.33
PTPRF-202ENST00000372405 RBBP4Q09028 425 aa13□□□□□ -0.33
PTPRF-202ENST00000372405 BIRC2Q13490 618 aa13□□□□□ -0.33
PTPRF-202ENST00000372405 SCARB2Q14108 478 aa13□□□□□ -0.33
PTPRF-202ENST00000372405 TEAD4Q15561 434 aa13□□□□□ -0.33
PTPRF-202ENST00000372405 MAPK11Q15759 364 aa13□□□□□ -0.33
PTPRF-202ENST00000372405 GPR19Q15760 415 aa13□□□□□ -0.33
PTPRF-202ENST00000372405 TNFAIP8L2Q6P589 184 aaPredicted RBP13□□□□□ -0.33
PTPRF-202ENST00000372405 CEACAM20Q6UY09 585 aa13□□□□□ -0.33
PTPRF-202ENST00000372405 MCATQ8IVS2 390 aaKnown RBP13□□□□□ -0.33
PTPRF-202ENST00000372405 GAB3Q8WWW8 586 aa13□□□□□ -0.33
PTPRF-202ENST00000372405 TMBIM1Q969X1 311 aa13□□□□□ -0.33
PTPRF-202ENST00000372405 HSH2DQ96JZ2 352 aa13□□□□□ -0.33
PTPRF-202ENST00000372405 TGM7Q96PF1 710 aa13□□□□□ -0.33
PTPRF-202ENST00000372405 ELF4Q99607 663 aaPredicted RBP13□□□□□ -0.33
PTPRF-202ENST00000372405 BDH2Q9BUT1 245 aa13□□□□□ -0.33
PTPRF-202ENST00000372405 VCXQ9H320 206 aa13□□□□□ -0.33
PTPRF-202ENST00000372405 RAD21L1Q9H4I0 556 aa13□□□□□ -0.33
PTPRF-202ENST00000372405 LRIT1Q9P2V4 623 aa13□□□□□ -0.33
PTPRF-202ENST00000372405 PILRBQ9UKJ0 227 aa13□□□□□ -0.33
PTPRF-202ENST00000372405 RAB26Q9ULW5 256 aa13□□□□□ -0.33
PTPRF-202ENST00000372405 PADI4Q9UM07 663 aa13□□□□□ -0.33
PTPRF-202ENST00000372405 NAALAD2Q9Y3Q0 740 aa13□□□□□ -0.33
PTPRF-202ENST00000372405 PCDHGB5Q9Y5G0 923 aa13□□□□□ -0.33
PTPRF-202ENST00000372405 MAGED1Q9Y5V3 778 aaPredicted RBP13□□□□□ -0.33
PTPRF-202ENST00000372405 SLC22A7Q9Y694 548 aa13□□□□□ -0.33
PTPRF-202ENST00000372405 CSNK1G3Q9Y6M4 447 aa13□□□□□ -0.33
PTPRF-202ENST00000372405 ADAMTS9Q9P2N4 1935 aa13□□□□□ -0.33
PTPRF-202ENST00000372405 IGHV5-51A0A0C4DH38 117 aa13□□□□□ -0.33
PTPRF-202ENST00000372405 LAMTOR5O43504 91 aa13□□□□□ -0.33
PTPRF-202ENST00000372405 DENRO43583 198 aaKnown RBP13□□□□□ -0.33
PTPRF-202ENST00000372405 GALR3O60755 368 aaPredicted RBP13□□□□□ -0.33
PTPRF-202ENST00000372405 RASAL1O95294 804 aa13□□□□□ -0.33
PTPRF-202ENST00000372405 CPN2P22792 545 aa13□□□□□ -0.33
PTPRF-202ENST00000372405 ALDH4A1P30038 563 aa13□□□□□ -0.33
PTPRF-202ENST00000372405 PRIM2P49643 509 aa13□□□□□ -0.33
PTPRF-202ENST00000372405 PCBP3P57721 371 aaKnown RBP13□□□□□ -0.33
PTPRF-202ENST00000372405 VLDLRP98155 873 aa13□□□□□ -0.33
PTPRF-202ENST00000372405 CDK6Q00534 326 aa13□□□□□ -0.33
PTPRF-202ENST00000372405 CSTF1Q05048 431 aaKnown RBP13□□□□□ -0.33
PTPRF-202ENST00000372405 TP53BP2Q13625 1128 aa13□□□□□ -0.33
PTPRF-202ENST00000372405 PRTGQ2VWP7 1150 aa13□□□□□ -0.33
PTPRF-202ENST00000372405 SPDYE7PQ495Y7 208 aa13□□□□□ -0.33
PTPRF-202ENST00000372405 PLK5Q496M5 336 aa13□□□□□ -0.33
PTPRF-202ENST00000372405 IQCCQ4KMZ1 466 aa13□□□□□ -0.33
PTPRF-202ENST00000372405 CYBRD1Q53TN4 286 aa13□□□□□ -0.33
PTPRF-202ENST00000372405 TMTC4Q5T4D3 741 aa13□□□□□ -0.33
PTPRF-202ENST00000372405 ZNF655Q8N720 491 aaPredicted RBP13□□□□□ -0.33
PTPRF-202ENST00000372405 ARL10Q8N8L6 244 aa13□□□□□ -0.33
PTPRF-202ENST00000372405 TMEM52Q8NDY8 209 aa13□□□□□ -0.33
PTPRF-202ENST00000372405 GATA6Q92908 595 aa13□□□□□ -0.33
PTPRF-202ENST00000372405 CCDC3Q9BQI4 270 aa13□□□□□ -0.33
PTPRF-202ENST00000372405 C9orf16Q9BUW7 83 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms