RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 NKD1Q969G9 470 aa14.23□□□□□ -0.13
COL17A1-201ENST00000353479 MACROD1Q9BQ69 325 aa14.23□□□□□ -0.13
COL17A1-201ENST00000353479 UBR3Q6ZT12 1888 aa14.23□□□□□ -0.13
COL17A1-201ENST00000353479 RNF13O43567 381 aa14.23□□□□□ -0.13
COL17A1-201ENST00000353479 PSIP1O75475 530 aaKnown RBP14.23□□□□□ -0.13
COL17A1-201ENST00000353479 CXCL10P02778 98 aa14.23□□□□□ -0.13
COL17A1-201ENST00000353479 IFNA6P05013 189 aa14.23□□□□□ -0.13
COL17A1-201ENST00000353479 ZNF888P0CJ79 500 aaPredicted RBP14.23□□□□□ -0.13
COL17A1-201ENST00000353479 HTR1EP28566 365 aa14.23□□□□□ -0.13
COL17A1-201ENST00000353479 HSD11B1P28845 292 aa14.23□□□□□ -0.13
COL17A1-201ENST00000353479 RBMS1P29558 406 aaKnown RBP14.23□□□□□ -0.13
COL17A1-201ENST00000353479 ZXDBP98169 803 aa14.23□□□□□ -0.13
COL17A1-201ENST00000353479 PON3Q15166 354 aa14.23□□□□□ -0.13
COL17A1-201ENST00000353479 C5orf22Q49AR2 442 aa14.23□□□□□ -0.13
COL17A1-201ENST00000353479 CNTN4Q8IWV2 1026 aa14.23□□□□□ -0.13
COL17A1-201ENST00000353479 WBP1LQ9NX94 342 aa14.23□□□□□ -0.13
COL17A1-201ENST00000353479 SSC5DA1L4H1 1573 aa14.23□□□□□ -0.13
COL17A1-201ENST00000353479 KIR2DS5A0A0G2JLQ3 304 aa14.23□□□□□ -0.13
COL17A1-201ENST00000353479 A0A0G2JNG1 304 aa14.23□□□□□ -0.13
COL17A1-201ENST00000353479 KIR2DS3K7RE56 304 aa14.23□□□□□ -0.13
COL17A1-201ENST00000353479 PRLP01236 227 aa14.23□□□□□ -0.13
COL17A1-201ENST00000353479 AOAHP28039 575 aa14.23□□□□□ -0.13
COL17A1-201ENST00000353479 PRDX3P30048 256 aaKnown RBP14.23□□□□□ -0.13
COL17A1-201ENST00000353479 SLC6A6P31641 620 aa14.23□□□□□ -0.13
COL17A1-201ENST00000353479 KDELR2P33947 212 aa14.23□□□□□ -0.13
COL17A1-201ENST00000353479 KIR2DS5Q14953 304 aa14.23□□□□□ -0.13
COL17A1-201ENST00000353479 COLEC12Q5KU26 742 aa14.23□□□□□ -0.13
COL17A1-201ENST00000353479 CDKL4Q5MAI5 379 aa14.23□□□□□ -0.13
COL17A1-201ENST00000353479 KIAA0895LQ68EN5 471 aa14.23□□□□□ -0.13
COL17A1-201ENST00000353479 TOR3AQ9H497 397 aa14.23□□□□□ -0.13
COL17A1-201ENST00000353479 SNTG1Q9NSN8 517 aa14.23□□□□□ -0.13
COL17A1-201ENST00000353479 NKIRAS2Q9NYR9 191 aa14.23□□□□□ -0.13
COL17A1-201ENST00000353479 A0A0J9YY10 115 aa14.22□□□□□ -0.13
COL17A1-201ENST00000353479 H7C0S8 307 aa14.22□□□□□ -0.13
COL17A1-201ENST00000353479 CDC40O60508 579 aaKnown RBP eCLIP14.22□□□□□ -0.13
COL17A1-201ENST00000353479 OTX2P32243 289 aa14.22□□□□□ -0.13
COL17A1-201ENST00000353479 TYSND1Q2T9J0 566 aa14.22□□□□□ -0.13
COL17A1-201ENST00000353479 TPRG1LQ5T0D9 272 aa14.22□□□□□ -0.13
COL17A1-201ENST00000353479 GPAT4Q86UL3 456 aa14.22□□□□□ -0.13
COL17A1-201ENST00000353479 TEX26Q8N6G2 289 aa14.22□□□□□ -0.13
COL17A1-201ENST00000353479 RASGEF1AQ8N9B8 481 aa14.22□□□□□ -0.13
COL17A1-201ENST00000353479 HSPBAP1Q96EW2 488 aa14.22□□□□□ -0.13
COL17A1-201ENST00000353479 ZBTB20Q9HC78 741 aaPredicted RBP14.22□□□□□ -0.13
COL17A1-201ENST00000353479 MGAT4BQ9UQ53 548 aa14.22□□□□□ -0.13
COL17A1-201ENST00000353479 TMEM5Q9Y2B1 443 aa14.22□□□□□ -0.13
COL17A1-201ENST00000353479 EVPLQ92817 2033 aa14.22□□□□□ -0.13
COL17A1-201ENST00000353479 UGDHO60701 494 aa14.22□□□□□ -0.13
COL17A1-201ENST00000353479 ETFAP13804 333 aa14.22□□□□□ -0.13
COL17A1-201ENST00000353479 CDH11P55287 796 aa14.22□□□□□ -0.13
COL17A1-201ENST00000353479 GNPDA2Q8TDQ7 276 aa14.22□□□□□ -0.13
COL17A1-201ENST00000353479 B3GAT2Q9NPZ5 323 aa14.22□□□□□ -0.13
COL17A1-201ENST00000353479 PPP4R1LQ9P1A2 415 aa14.22□□□□□ -0.13
COL17A1-201ENST00000353479 A0A1B0GVT2 93 aa14.22□□□□□ -0.13
COL17A1-201ENST00000353479 SERPINA3P01011 423 aa14.22□□□□□ -0.13
COL17A1-201ENST00000353479 S100GP29377 79 aa14.22□□□□□ -0.13
COL17A1-201ENST00000353479 MLLT10P55197 1068 aa14.22□□□□□ -0.13
COL17A1-201ENST00000353479 FAM69BQ5VUD6 431 aa14.22□□□□□ -0.13
COL17A1-201ENST00000353479 ADNP2Q6IQ32 1131 aa14.22□□□□□ -0.13
COL17A1-201ENST00000353479 ZC3H14Q6PJT7 736 aaKnown RBP14.22□□□□□ -0.13
COL17A1-201ENST00000353479 FANK1Q8TC84 345 aa14.22□□□□□ -0.13
COL17A1-201ENST00000353479 ADAMTS18Q8TE60 1221 aa14.22□□□□□ -0.13
COL17A1-201ENST00000353479 TMEM234Q8WY98 164 aa14.22□□□□□ -0.13
COL17A1-201ENST00000353479 FBXL20Q96IG2 436 aa14.22□□□□□ -0.13
COL17A1-201ENST00000353479 SIT1Q9Y3P8 196 aa14.22□□□□□ -0.13
COL17A1-201ENST00000353479 RREB1Q92766 1687 aa14.22□□□□□ -0.13
COL17A1-201ENST00000353479 TFECO14948 347 aaPredicted RBP14.22□□□□□ -0.13
COL17A1-201ENST00000353479 NUAK1O60285 661 aa14.22□□□□□ -0.13
COL17A1-201ENST00000353479 CYB5AP00167 134 aa14.22□□□□□ -0.13
COL17A1-201ENST00000353479 PENKP01210 267 aaPredicted RBP14.22□□□□□ -0.13
COL17A1-201ENST00000353479 RLN1P04808 185 aa14.22□□□□□ -0.13
COL17A1-201ENST00000353479 FAUP35544 74 aaKnown RBP14.22□□□□□ -0.13
COL17A1-201ENST00000353479 PBX2P40425 430 aa14.22□□□□□ -0.13
COL17A1-201ENST00000353479 KIR2DS3Q14952 304 aa14.22□□□□□ -0.13
COL17A1-201ENST00000353479 SPATC1Q76KD6 591 aa14.22□□□□□ -0.13
COL17A1-201ENST00000353479 ZNF534Q76KX8 674 aa14.22□□□□□ -0.13
COL17A1-201ENST00000353479 RABEPKQ7Z6M1 372 aa14.22□□□□□ -0.13
COL17A1-201ENST00000353479 MINDY1Q8N5J2 469 aa14.22□□□□□ -0.13
COL17A1-201ENST00000353479 YIPF7Q8N8F6 280 aa14.22□□□□□ -0.13
COL17A1-201ENST00000353479 THEM6Q8WUY1 208 aa14.22□□□□□ -0.13
COL17A1-201ENST00000353479 FAM129BQ96TA1 746 aa14.22□□□□□ -0.13
COL17A1-201ENST00000353479 LGR4Q9BXB1 951 aa14.22□□□□□ -0.13
COL17A1-201ENST00000353479 ZNF222Q9UK12 451 aa14.22□□□□□ -0.13
COL17A1-201ENST00000353479 PLD2O14939 933 aa14.22□□□□□ -0.13
COL17A1-201ENST00000353479 RPS17P08708 135 aaKnown RBP14.22□□□□□ -0.13
COL17A1-201ENST00000353479 ZNF20P17024 532 aa14.22□□□□□ -0.13
COL17A1-201ENST00000353479 EDNRAP25101 427 aa14.22□□□□□ -0.13
COL17A1-201ENST00000353479 AZGP1P25311 298 aaKnown RBP14.22□□□□□ -0.13
COL17A1-201ENST00000353479 CAMK1Q14012 370 aa14.22□□□□□ -0.13
COL17A1-201ENST00000353479 DUSP6Q16828 381 aa14.22□□□□□ -0.13
COL17A1-201ENST00000353479 IDNKQ5T6J7 187 aa14.22□□□□□ -0.13
COL17A1-201ENST00000353479 IKBIPQ70UQ0 350 aa14.22□□□□□ -0.13
COL17A1-201ENST00000353479 SERINC2Q96SA4 455 aa14.22□□□□□ -0.13
COL17A1-201ENST00000353479 SORBS1Q9BX66 1292 aaKnown RBP14.22□□□□□ -0.13
COL17A1-201ENST00000353479 DMRT3Q9NQL9 472 aa14.22□□□□□ -0.13
COL17A1-201ENST00000353479 COMMD9Q9P000 198 aa14.22□□□□□ -0.13
COL17A1-201ENST00000353479 CPNE7Q9UBL6 633 aa14.22□□□□□ -0.13
COL17A1-201ENST00000353479 PLCL2Q9UPR0 1127 aa14.22□□□□□ -0.13
COL17A1-201ENST00000353479 PCDHGB1Q9Y5G3 927 aa14.22□□□□□ -0.13
COL17A1-201ENST00000353479 C11orf98E9PRG8 122 aa14.21□□□□□ -0.13
COL17A1-201ENST00000353479 EGFP01133 1207 aa14.21□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms