RNA–Protein interactions for RNA: ENST00000353317.9

TRIM55-204, Transcript of tripartite motif containing 55, humanhuman

TSL 1 (best) BASIC

Gene TRIM55, Length 2,624 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM55-204ENST00000353317 UBXN2BQ14CS0 331 aa8.19□□□□□ -1.1
TRIM55-204ENST00000353317 PRPF38BQ5VTL8 546 aaKnown RBP8.19□□□□□ -1.1
TRIM55-204ENST00000353317 ADNP2Q6IQ32 1131 aa8.19□□□□□ -1.1
TRIM55-204ENST00000353317 KIAA1161Q6NSJ0 714 aa8.19□□□□□ -1.1
TRIM55-204ENST00000353317 SYTL1Q8IYJ3 562 aa8.19□□□□□ -1.1
TRIM55-204ENST00000353317 METTL4Q8N3J2 472 aa8.19□□□□□ -1.1
TRIM55-204ENST00000353317 C2orf73Q8N5S3 287 aaPredicted RBP8.19□□□□□ -1.1
TRIM55-204ENST00000353317 AMER2Q8N7J2 671 aa8.19□□□□□ -1.1
TRIM55-204ENST00000353317 Q8N9G6 341 aaPredicted RBP8.19□□□□□ -1.1
TRIM55-204ENST00000353317 OR8J2Q8NGG1 315 aa8.19□□□□□ -1.1
TRIM55-204ENST00000353317 OR5AR1Q8NGP9 310 aa8.19□□□□□ -1.1
TRIM55-204ENST00000353317 CCL4L1Q8NHW4 92 aa8.19□□□□□ -1.1
TRIM55-204ENST00000353317 CDC26Q8NHZ8 85 aa8.19□□□□□ -1.1
TRIM55-204ENST00000353317 ZNF675Q8TD23 568 aa8.19□□□□□ -1.1
TRIM55-204ENST00000353317 SH3KBP1Q96B97 665 aa8.19□□□□□ -1.1
TRIM55-204ENST00000353317 FCRL1Q96LA6 429 aa8.19□□□□□ -1.1
TRIM55-204ENST00000353317 CENPOQ9BU64 300 aa8.19□□□□□ -1.1
TRIM55-204ENST00000353317 HOXD1Q9GZZ0 328 aa8.19□□□□□ -1.1
TRIM55-204ENST00000353317 CHST8Q9H2A9 424 aa8.19□□□□□ -1.1
TRIM55-204ENST00000353317 RUBCNLQ9H714 662 aa8.19□□□□□ -1.1
TRIM55-204ENST00000353317 PLCXD1Q9NUJ7 323 aa8.19□□□□□ -1.1
TRIM55-204ENST00000353317 RLIMQ9NVW2 624 aa8.19□□□□□ -1.1
TRIM55-204ENST00000353317 FKBP14Q9NWM8 211 aa8.19□□□□□ -1.1
TRIM55-204ENST00000353317 STOX2Q9P2F5 926 aaPredicted RBP8.19□□□□□ -1.1
TRIM55-204ENST00000353317 SPASTQ9UBP0 616 aa8.19□□□□□ -1.1
TRIM55-204ENST00000353317 CYP8B1Q9UNU6 501 aa8.19□□□□□ -1.1
TRIM55-204ENST00000353317 KCNK6Q9Y257 313 aa8.19□□□□□ -1.1
TRIM55-204ENST00000353317 PCDHB11Q9Y5F2 797 aa8.19□□□□□ -1.1
TRIM55-204ENST00000353317 PCDHGB3Q9Y5G1 929 aa8.19□□□□□ -1.1
TRIM55-204ENST00000353317 ZDBF2Q9HCK1 2354 aa8.19□□□□□ -1.1
TRIM55-204ENST00000353317 C17orf113A0A1B0GUU1 675 aa8.18□□□□□ -1.1
TRIM55-204ENST00000353317 PRR19A6NJB7 356 aa8.18□□□□□ -1.1
TRIM55-204ENST00000353317 FAM170BA6NMN3 283 aa8.18□□□□□ -1.1
TRIM55-204ENST00000353317 SUV39H1O43463 412 aa8.18□□□□□ -1.1
TRIM55-204ENST00000353317 PTTG1O95997 202 aa8.18□□□□□ -1.1
TRIM55-204ENST00000353317 PTHP01270 115 aa8.18□□□□□ -1.1
TRIM55-204ENST00000353317 RPLP0P05388 317 aaKnown RBP8.18□□□□□ -1.1
TRIM55-204ENST00000353317 STSP08842 583 aa8.18□□□□□ -1.1
TRIM55-204ENST00000353317 HIST1H2AGP0C0S8 130 aaPredicted RBP8.18□□□□□ -1.1
TRIM55-204ENST00000353317 ADORA3P0DMS8 318 aa8.18□□□□□ -1.1
TRIM55-204ENST00000353317 ACP5P13686 325 aa8.18□□□□□ -1.1
TRIM55-204ENST00000353317 ACPPP15309 386 aa8.18□□□□□ -1.1
TRIM55-204ENST00000353317 TNFRSF1BP20333 461 aa8.18□□□□□ -1.1
TRIM55-204ENST00000353317 HIST1H2ADP20671 130 aa8.18□□□□□ -1.1
TRIM55-204ENST00000353317 GGT2P36268 569 aa8.18□□□□□ -1.1
TRIM55-204ENST00000353317 NR4A2P43354 598 aa8.18□□□□□ -1.1
TRIM55-204ENST00000353317 IDH2P48735 452 aaKnown RBP8.18□□□□□ -1.1
TRIM55-204ENST00000353317 CYP4F2P78329 520 aa8.18□□□□□ -1.1
TRIM55-204ENST00000353317 CHIT1Q13231 466 aa8.18□□□□□ -1.1
TRIM55-204ENST00000353317 CDKL4Q5MAI5 379 aa8.18□□□□□ -1.1
TRIM55-204ENST00000353317 MLIPQ5VWP3 458 aa8.18□□□□□ -1.1
TRIM55-204ENST00000353317 METRNLQ641Q3 311 aa8.18□□□□□ -1.1
TRIM55-204ENST00000353317 LRRTM4Q86VH4 590 aa8.18□□□□□ -1.1
TRIM55-204ENST00000353317 AMZ2Q86W34 360 aa8.18□□□□□ -1.1
TRIM55-204ENST00000353317 HOMEZQ8IX15 550 aa8.18□□□□□ -1.1
TRIM55-204ENST00000353317 SIX5Q8N196 739 aa8.18□□□□□ -1.1
TRIM55-204ENST00000353317 DEFB119Q8N690 84 aa8.18□□□□□ -1.1
TRIM55-204ENST00000353317 SLC5A8Q8N695 610 aa8.18□□□□□ -1.1
TRIM55-204ENST00000353317 OR52J3Q8NH60 311 aa8.18□□□□□ -1.1
TRIM55-204ENST00000353317 ZNF480Q8WV37 535 aa8.18□□□□□ -1.1
TRIM55-204ENST00000353317 PDXPQ96GD0 296 aa8.18□□□□□ -1.1
TRIM55-204ENST00000353317 HIST1H2AHQ96KK5 128 aa8.18□□□□□ -1.1
TRIM55-204ENST00000353317 MTERF1Q99551 399 aaKnown RBP8.18□□□□□ -1.1
TRIM55-204ENST00000353317 HIST1H2AJQ99878 128 aa8.18□□□□□ -1.1
TRIM55-204ENST00000353317 H2AFJQ9BTM1 129 aa8.18□□□□□ -1.1
TRIM55-204ENST00000353317 FBRSQ9HAH7 460 aa8.18□□□□□ -1.1
TRIM55-204ENST00000353317 NDUFAF4Q9P032 175 aa8.18□□□□□ -1.1
TRIM55-204ENST00000353317 KLHL3Q9UH77 587 aa8.18□□□□□ -1.1
TRIM55-204ENST00000353317 SLC17A4Q9Y2C5 497 aa8.18□□□□□ -1.1
TRIM55-204ENST00000353317 PADI2Q9Y2J8 665 aa8.18□□□□□ -1.1
TRIM55-204ENST00000353317 LYVE1Q9Y5Y7 322 aa8.18□□□□□ -1.1
TRIM55-204ENST00000353317 PLXND1Q9Y4D7 1925 aa8.18□□□□□ -1.1
TRIM55-204ENST00000353317 ALOX12P18054 663 aa8.18□□□□□ -1.1
TRIM55-204ENST00000353317 IFITM2Q01629 132 aa8.18□□□□□ -1.1
TRIM55-204ENST00000353317 ZNF45Q02386 682 aa8.18□□□□□ -1.1
TRIM55-204ENST00000353317 PRKCDQ05655 676 aa8.18□□□□□ -1.1
TRIM55-204ENST00000353317 NAE1Q13564 534 aa8.18□□□□□ -1.1
TRIM55-204ENST00000353317 TTC23LQ6PF05 361 aa8.18□□□□□ -1.1
TRIM55-204ENST00000353317 AGTRAPQ6RW13 159 aa8.18□□□□□ -1.1
TRIM55-204ENST00000353317 GDPD3Q7L5L3 318 aa8.18□□□□□ -1.1
TRIM55-204ENST00000353317 SYT13Q7L8C5 426 aa8.18□□□□□ -1.1
TRIM55-204ENST00000353317 SFTPA2Q8IWL1 248 aa8.18□□□□□ -1.1
TRIM55-204ENST00000353317 LRRC56Q8IYG6 542 aaPredicted RBP8.18□□□□□ -1.1
TRIM55-204ENST00000353317 NLGN4XQ8N0W4 816 aa8.18□□□□□ -1.1
TRIM55-204ENST00000353317 CLIP4Q8N3C7 705 aa8.18□□□□□ -1.1
TRIM55-204ENST00000353317 OXR1Q8N573 874 aa8.18□□□□□ -1.1
TRIM55-204ENST00000353317 OR1E3Q8WZA6 343 aa8.18□□□□□ -1.1
TRIM55-204ENST00000353317 MYDGFQ969H8 173 aa8.18□□□□□ -1.1
TRIM55-204ENST00000353317 TOE1Q96GM8 510 aaKnown RBP8.18□□□□□ -1.1
TRIM55-204ENST00000353317 Q96MT0 163 aa8.18□□□□□ -1.1
TRIM55-204ENST00000353317 NIPSNAP1Q9BPW8 284 aa8.18□□□□□ -1.1
TRIM55-204ENST00000353317 ORAI3Q9BRQ5 295 aa8.18□□□□□ -1.1
TRIM55-204ENST00000353317 DOHHQ9BU89 302 aa8.18□□□□□ -1.1
TRIM55-204ENST00000353317 BTBD1Q9H0C5 482 aa8.18□□□□□ -1.1
TRIM55-204ENST00000353317 FAM120CQ9NX05 1096 aaKnown RBP8.18□□□□□ -1.1
TRIM55-204ENST00000353317 SCML1Q9UN30 329 aa8.18□□□□□ -1.1
TRIM55-204ENST00000353317 SLC6A14Q9UN76 642 aa8.18□□□□□ -1.1
TRIM55-204ENST00000353317 IFT52Q9Y366 437 aa8.18□□□□□ -1.1
TRIM55-204ENST00000353317 A3GALT2U3KPV4 340 aa8.18□□□□□ -1.1
TRIM55-204ENST00000353317 C1orf226A1L170 272 aa8.17□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms