RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 CDH7Q9ULB5 785 aa11.39□□□□□ -0.59
USP1-201ENST00000339950 HCN4Q9Y3Q4 1203 aa11.39□□□□□ -0.59
USP1-201ENST00000339950 C2orf92A0A1B0GVN3 265 aa11.39□□□□□ -0.59
USP1-201ENST00000339950 GRXCR1A8MXD5 290 aa11.39□□□□□ -0.59
USP1-201ENST00000339950 WISP3O95389 354 aaPredicted RBP11.39□□□□□ -0.59
USP1-201ENST00000339950 HPRP00739 348 aa11.39□□□□□ -0.59
USP1-201ENST00000339950 RB1P06400 928 aa11.39□□□□□ -0.59
USP1-201ENST00000339950 C1GALT1C1LP0DN25 315 aa11.39□□□□□ -0.59
USP1-201ENST00000339950 C6P13671 934 aa11.39□□□□□ -0.59
USP1-201ENST00000339950 MYOGP15173 224 aa11.39□□□□□ -0.59
USP1-201ENST00000339950 CSTF2P33240 577 aaKnown RBP eCLIP11.39□□□□□ -0.59
USP1-201ENST00000339950 SLC15A1P46059 708 aa11.39□□□□□ -0.59
USP1-201ENST00000339950 GPR4P46093 362 aa11.39□□□□□ -0.59
USP1-201ENST00000339950 RGS8P57771 180 aaPredicted RBP11.39□□□□□ -0.59
USP1-201ENST00000339950 ZNF791Q3KP31 576 aaPredicted RBP11.39□□□□□ -0.59
USP1-201ENST00000339950 RNF44Q7L0R7 432 aa11.39□□□□□ -0.59
USP1-201ENST00000339950 KRT73Q86Y46 540 aa11.39□□□□□ -0.59
USP1-201ENST00000339950 PTOV1Q86YD1 416 aa11.39□□□□□ -0.59
USP1-201ENST00000339950 RAB43Q86YS6 212 aa11.39□□□□□ -0.59
USP1-201ENST00000339950 OR9A1PQ8NGU1 263 aa11.39□□□□□ -0.59
USP1-201ENST00000339950 SMAP2Q8WU79 429 aaPredicted RBP11.39□□□□□ -0.59
USP1-201ENST00000339950 NARS2Q96I59 477 aaKnown RBP11.39□□□□□ -0.59
USP1-201ENST00000339950 AIF1LQ9BQI0 150 aa11.39□□□□□ -0.59
USP1-201ENST00000339950 TTLL2Q9BWV7 592 aa11.39□□□□□ -0.59
USP1-201ENST00000339950 SLC6A17Q9H1V8 727 aa11.39□□□□□ -0.59
USP1-201ENST00000339950 GPN2Q9H9Y4 310 aaPredicted RBP11.39□□□□□ -0.59
USP1-201ENST00000339950 INIPQ9NRY2 104 aa11.39□□□□□ -0.59
USP1-201ENST00000339950 NDUFAF4Q9P032 175 aa11.39□□□□□ -0.59
USP1-201ENST00000339950 GULP1Q9UBP9 304 aa11.39□□□□□ -0.59
USP1-201ENST00000339950 FABP12A6NFH5 140 aa11.38□□□□□ -0.59
USP1-201ENST00000339950 NCR1O76036 304 aa11.38□□□□□ -0.59
USP1-201ENST00000339950 H1F0P07305 194 aaKnown RBP11.38□□□□□ -0.59
USP1-201ENST00000339950 CCNYL3P0C7X3 344 aa11.38□□□□□ -0.59
USP1-201ENST00000339950 PSKH1P11801 424 aa11.38□□□□□ -0.59
USP1-201ENST00000339950 CCL5P13501 91 aa11.38□□□□□ -0.59
USP1-201ENST00000339950 ANXA8P13928 327 aa11.38□□□□□ -0.59
USP1-201ENST00000339950 ITIH1P19827 911 aa11.38□□□□□ -0.59
USP1-201ENST00000339950 IDSP22304 550 aa11.38□□□□□ -0.59
USP1-201ENST00000339950 HOXC8P31273 242 aa11.38□□□□□ -0.59
USP1-201ENST00000339950 IRS1P35568 1242 aa11.38□□□□□ -0.59
USP1-201ENST00000339950 PIK3CBP42338 1070 aa11.38□□□□□ -0.59
USP1-201ENST00000339950 IFITM3Q01628 133 aa11.38□□□□□ -0.59
USP1-201ENST00000339950 ATAD3BQ5T9A4 648 aa11.38□□□□□ -0.59
USP1-201ENST00000339950 TMEM107Q6UX40 140 aa11.38□□□□□ -0.59
USP1-201ENST00000339950 LIPIQ6XZB0 460 aa11.38□□□□□ -0.59
USP1-201ENST00000339950 TRIM46Q7Z4K8 759 aa11.38□□□□□ -0.59
USP1-201ENST00000339950 TSPYL5Q86VY4 417 aaPredicted RBP11.38□□□□□ -0.59
USP1-201ENST00000339950 PRSS58Q8IYP2 241 aa11.38□□□□□ -0.59
USP1-201ENST00000339950 PCNPQ8WW12 178 aaKnown RBP11.38□□□□□ -0.59
USP1-201ENST00000339950 SIPA1Q96FS4 1042 aa11.38□□□□□ -0.59
USP1-201ENST00000339950 LRR1Q96L50 414 aa11.38□□□□□ -0.59
USP1-201ENST00000339950 ZFP3Q96NJ6 502 aa11.38□□□□□ -0.59
USP1-201ENST00000339950 ERVK-11Q9UQG0 969 aa11.38□□□□□ -0.59
USP1-201ENST00000339950 FAM240BA0A1B0GVZ2 78 aa11.38□□□□□ -0.59
USP1-201ENST00000339950 CPNE6O95741 557 aa11.38□□□□□ -0.59
USP1-201ENST00000339950 NR2F6P10588 404 aa11.38□□□□□ -0.59
USP1-201ENST00000339950 PTPN2P17706 415 aa11.38□□□□□ -0.59
USP1-201ENST00000339950 PAICSP22234 425 aaKnown RBP11.38□□□□□ -0.59
USP1-201ENST00000339950 RAB33AQ14088 237 aa11.38□□□□□ -0.59
USP1-201ENST00000339950 KIAA0040Q15053 153 aa11.38□□□□□ -0.59
USP1-201ENST00000339950 TEAD4Q15561 434 aa11.38□□□□□ -0.59
USP1-201ENST00000339950 ODF4Q2M2E3 257 aa11.38□□□□□ -0.59
USP1-201ENST00000339950 PLEKHG7Q6ZR37 379 aa11.38□□□□□ -0.59
USP1-201ENST00000339950 TMEM150AQ86TG1 271 aa11.38□□□□□ -0.59
USP1-201ENST00000339950 ALDH16A1Q8IZ83 802 aa11.38□□□□□ -0.59
USP1-201ENST00000339950 HORMAD2Q8N7B1 307 aa11.38□□□□□ -0.59
USP1-201ENST00000339950 MAGEB10Q96LZ2 347 aaPredicted RBP11.38□□□□□ -0.59
USP1-201ENST00000339950 ZNF300Q96RE9 604 aaPredicted RBP11.38□□□□□ -0.59
USP1-201ENST00000339950 ZSCAN5AQ9BUG6 496 aa11.38□□□□□ -0.59
USP1-201ENST00000339950 TSSK6Q9BXA6 273 aa11.38□□□□□ -0.59
USP1-201ENST00000339950 SPRTNQ9H040 489 aaPredicted RBP11.38□□□□□ -0.59
USP1-201ENST00000339950 ZNF224Q9NZL3 707 aa11.38□□□□□ -0.59
USP1-201ENST00000339950 NTNG1Q9Y2I2 539 aa11.38□□□□□ -0.59
USP1-201ENST00000339950 A0A1W2PP55 124 aa11.38□□□□□ -0.59
USP1-201ENST00000339950 FZD6O60353 706 aa11.38□□□□□ -0.59
USP1-201ENST00000339950 SAGP10523 405 aaPredicted RBP11.38□□□□□ -0.59
USP1-201ENST00000339950 NTSP30990 170 aa11.38□□□□□ -0.59
USP1-201ENST00000339950 SELENOWP63302 87 aa11.38□□□□□ -0.59
USP1-201ENST00000339950 CTF1Q16619 201 aa11.38□□□□□ -0.59
USP1-201ENST00000339950 ZMAT1Q5H9K5 638 aa11.38□□□□□ -0.59
USP1-201ENST00000339950 LHX8Q68G74 356 aa11.38□□□□□ -0.59
USP1-201ENST00000339950 KIAA1324Q6UXG2 1013 aaKnown RBP11.38□□□□□ -0.59
USP1-201ENST00000339950 FAM92BQ6ZTR7 304 aa11.38□□□□□ -0.59
USP1-201ENST00000339950 SLC39A11Q8N1S5 342 aa11.38□□□□□ -0.59
USP1-201ENST00000339950 SYT14Q8NB59 555 aa11.38□□□□□ -0.59
USP1-201ENST00000339950 PLA2G15Q8NCC3 412 aa11.38□□□□□ -0.59
USP1-201ENST00000339950 GRHL3Q8TE85 626 aa11.38□□□□□ -0.59
USP1-201ENST00000339950 TEX10Q9NXF1 929 aaPredicted RBP11.38□□□□□ -0.59
USP1-201ENST00000339950 TMPRSS11EQ9UL52 423 aa11.38□□□□□ -0.59
USP1-201ENST00000339950 LRRC72A6NJI9 287 aa11.37□□□□□ -0.59
USP1-201ENST00000339950 CD8B2A6NJW9 211 aa11.37□□□□□ -0.59
USP1-201ENST00000339950 CD8BP10966 210 aa11.37□□□□□ -0.59
USP1-201ENST00000339950 SPNP16150 400 aa11.37□□□□□ -0.59
USP1-201ENST00000339950 GRSF1Q12849 480 aaKnown RBP eCLIP11.37□□□□□ -0.59
USP1-201ENST00000339950 PPP2R2DQ66LE6 453 aa11.37□□□□□ -0.59
USP1-201ENST00000339950 GTF2IRD2BQ6EKJ0 949 aa11.37□□□□□ -0.59
USP1-201ENST00000339950 SLC30A6Q6NXT4 461 aa11.37□□□□□ -0.59
USP1-201ENST00000339950 VITQ6UXI7 678 aa11.37□□□□□ -0.59
USP1-201ENST00000339950 PLEKHM3Q6ZWE6 761 aa11.37□□□□□ -0.59
USP1-201ENST00000339950 CBLL1Q75N03 491 aa11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms