RNA–Protein interactions for RNA: ENST00000334389.5

LINC00643-201, long intergenic non-protein coding RNA 643, humanhuman

TSL 2 BASIC

Gene LINC00643, Length 3,247 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-201ENST00000334389 ZSCAN16Q9H4T2 348 aaPredicted RBP1.36□□□□□ -2.19
LINC00643-201ENST00000334389 CXorf36Q9H7Y0 433 aa1.36□□□□□ -2.19
LINC00643-201ENST00000334389 ZNF304Q9HCX3 659 aa1.36□□□□□ -2.19
LINC00643-201ENST00000334389 EXOSC3Q9NQT5 275 aaKnown RBP1.36□□□□□ -2.19
LINC00643-201ENST00000334389 PRDM7Q9NQW5 492 aa1.36□□□□□ -2.19
LINC00643-201ENST00000334389 FAM207AQ9NSI2 230 aaPredicted RBP1.36□□□□□ -2.19
LINC00643-201ENST00000334389 CUTCQ9NTM9 273 aa1.36□□□□□ -2.19
LINC00643-201ENST00000334389 MRPL39Q9NYK5 338 aaKnown RBP1.36□□□□□ -2.19
LINC00643-201ENST00000334389 B3GAT1Q9P2W7 334 aa1.36□□□□□ -2.19
LINC00643-201ENST00000334389 STOML1Q9UBI4 398 aa1.36□□□□□ -2.19
LINC00643-201ENST00000334389 CCDC39Q9UFE4 941 aa1.36□□□□□ -2.19
LINC00643-201ENST00000334389 HOOK1Q9UJC3 728 aaKnown RBP1.36□□□□□ -2.19
LINC00643-201ENST00000334389 RASAL2Q9UJF2 1139 aa1.36□□□□□ -2.19
LINC00643-201ENST00000334389 MOSPD1Q9UJG1 213 aa1.36□□□□□ -2.19
LINC00643-201ENST00000334389 CLDN16Q9Y5I7 305 aa1.36□□□□□ -2.19
LINC00643-201ENST00000334389 IGLV1-36A0A0B4J1U3 117 aa1.36□□□□□ -2.19
LINC00643-201ENST00000334389 TRBC2A0A5B9 178 aa1.36□□□□□ -2.19
LINC00643-201ENST00000334389 CCRL2O00421 344 aa1.36□□□□□ -2.19
LINC00643-201ENST00000334389 BUB1BO60566 1050 aaPredicted RBP1.36□□□□□ -2.19
LINC00643-201ENST00000334389 SLC43A1O75387 559 aa1.36□□□□□ -2.19
LINC00643-201ENST00000334389 PSIP1O75475 530 aaKnown RBP1.36□□□□□ -2.19
LINC00643-201ENST00000334389 YEATS4O95619 227 aa1.36□□□□□ -2.19
LINC00643-201ENST00000334389 SNAP29O95721 258 aa1.36□□□□□ -2.19
LINC00643-201ENST00000334389 ITIH1P19827 911 aa1.36□□□□□ -2.19
LINC00643-201ENST00000334389 CYP2A7P20853 494 aa1.36□□□□□ -2.19
LINC00643-201ENST00000334389 AMPD1P23109 780 aa1.36□□□□□ -2.19
LINC00643-201ENST00000334389 PPARGP37231 505 aaPredicted RBP1.36□□□□□ -2.19
LINC00643-201ENST00000334389 MSH2P43246 934 aa1.36□□□□□ -2.19
LINC00643-201ENST00000334389 MAP2K4P45985 399 aa1.36□□□□□ -2.19
LINC00643-201ENST00000334389 AVPR1BP47901 424 aa1.36□□□□□ -2.19
LINC00643-201ENST00000334389 SLC6A8P48029 635 aa1.36□□□□□ -2.19
LINC00643-201ENST00000334389 POLD2P49005 469 aa1.36□□□□□ -2.19
LINC00643-201ENST00000334389 NR2C2P49116 596 aa1.36□□□□□ -2.19
LINC00643-201ENST00000334389 CYB561P49447 251 aa1.36□□□□□ -2.19
LINC00643-201ENST00000334389 SSR4P51571 173 aa1.36□□□□□ -2.19
LINC00643-201ENST00000334389 MAMLD1Q13495 774 aa1.36□□□□□ -2.19
LINC00643-201ENST00000334389 FASTKD3Q14CZ7 662 aaKnown RBP1.36□□□□□ -2.19
LINC00643-201ENST00000334389 CAMK4Q16566 473 aa1.36□□□□□ -2.19
LINC00643-201ENST00000334389 PGGHGQ32M88 737 aa1.36□□□□□ -2.19
LINC00643-201ENST00000334389 ASPHD1Q5U4P2 390 aa1.36□□□□□ -2.19
LINC00643-201ENST00000334389 ABHD17CQ6PCB6 329 aa1.36□□□□□ -2.19
LINC00643-201ENST00000334389 WDR59Q6PJI9 974 aa1.36□□□□□ -2.19
LINC00643-201ENST00000334389 C6orf89Q6UWU4 347 aa1.36□□□□□ -2.19
LINC00643-201ENST00000334389 PIGZQ86VD9 579 aa1.36□□□□□ -2.19
LINC00643-201ENST00000334389 TMEM200AQ86VY9 491 aa1.36□□□□□ -2.19
LINC00643-201ENST00000334389 AMZ2Q86W34 360 aa1.36□□□□□ -2.19
LINC00643-201ENST00000334389 MUC20Q8N307 709 aaPredicted RBP1.36□□□□□ -2.19
LINC00643-201ENST00000334389 PAQR4Q8N4S7 273 aaPredicted RBP1.36□□□□□ -2.19
LINC00643-201ENST00000334389 CPEB3Q8NE35 698 aaKnown RBP1.36□□□□□ -2.19
LINC00643-201ENST00000334389 NANPQ8TBE9 248 aa1.36□□□□□ -2.19
LINC00643-201ENST00000334389 ANP32BQ92688 251 aaKnown RBP1.36□□□□□ -2.19
LINC00643-201ENST00000334389 PMEPA1Q969W9 287 aa1.36□□□□□ -2.19
LINC00643-201ENST00000334389 RMDN2Q96LZ7 410 aa1.36□□□□□ -2.19
LINC00643-201ENST00000334389 RBM24Q9BX46 236 aaKnown RBP1.36□□□□□ -2.19
LINC00643-201ENST00000334389 STMN4Q9H169 189 aaPredicted RBP1.36□□□□□ -2.19
LINC00643-201ENST00000334389 NDST4Q9H3R1 872 aa1.36□□□□□ -2.19
LINC00643-201ENST00000334389 RDH14Q9HBH5 336 aa1.36□□□□□ -2.19
LINC00643-201ENST00000334389 NOD2Q9HC29 1040 aa1.36□□□□□ -2.19
LINC00643-201ENST00000334389 ZBTB26Q9HCK0 441 aa1.36□□□□□ -2.19
LINC00643-201ENST00000334389 C1RLQ9NZP8 487 aa1.36□□□□□ -2.19
LINC00643-201ENST00000334389 CLEC4EQ9ULY5 219 aa1.36□□□□□ -2.19
LINC00643-201ENST00000334389 PRPF19Q9UMS4 504 aaKnown RBP1.36□□□□□ -2.19
LINC00643-201ENST00000334389 NOP16Q9Y3C1 178 aaKnown RBP1.36□□□□□ -2.19
LINC00643-201ENST00000334389 HES2Q9Y543 173 aa1.36□□□□□ -2.19
LINC00643-201ENST00000334389 INSIG2Q9Y5U4 225 aa1.36□□□□□ -2.19
LINC00643-201ENST00000334389 TEX264Q9Y6I9 313 aa1.36□□□□□ -2.19
LINC00643-201ENST00000334389 HMCN2Q8NDA2 5059 aa1.36□□□□□ -2.19
LINC00643-201ENST00000334389 BPTFQ12830 3046 aa1.36□□□□□ -2.19
LINC00643-201ENST00000334389 TRGV5A0A0B4J1U4 118 aa1.36□□□□□ -2.19
LINC00643-201ENST00000334389 IGHV5-51A0A0C4DH38 117 aa1.36□□□□□ -2.19
LINC00643-201ENST00000334389 hCG_1809904A0A1W2PP81 198 aa1.36□□□□□ -2.19
LINC00643-201ENST00000334389 A0A1W2PR64 198 aa1.36□□□□□ -2.19
LINC00643-201ENST00000334389 A0A1W2PRV1 198 aa1.36□□□□□ -2.19
LINC00643-201ENST00000334389 OR6C70A6NIJ9 312 aa1.36□□□□□ -2.19
LINC00643-201ENST00000334389 GABRR3A8MPY1 467 aa1.36□□□□□ -2.19
LINC00643-201ENST00000334389 A8MXQ7 604 aa1.36□□□□□ -2.19
LINC00643-201ENST00000334389 NDUFA2O43678 99 aa1.36□□□□□ -2.19
LINC00643-201ENST00000334389 AHCYL1O43865 530 aa1.36□□□□□ -2.19
LINC00643-201ENST00000334389 PRDM1O75626 825 aa1.36□□□□□ -2.19
LINC00643-201ENST00000334389 UPK3AO75631 287 aa1.36□□□□□ -2.19
LINC00643-201ENST00000334389 TMCC1O94876 653 aa1.36□□□□□ -2.19
LINC00643-201ENST00000334389 KLHL18O94889 574 aa1.36□□□□□ -2.19
LINC00643-201ENST00000334389 CLSTN1O94985 981 aa1.36□□□□□ -2.19
LINC00643-201ENST00000334389 SNUPNO95149 360 aaKnown RBP1.36□□□□□ -2.19
LINC00643-201ENST00000334389 FTH1P02794 183 aa1.36□□□□□ -2.19
LINC00643-201ENST00000334389 CLPSP04118 112 aa1.36□□□□□ -2.19
LINC00643-201ENST00000334389 MSMBP08118 114 aa1.36□□□□□ -2.19
LINC00643-201ENST00000334389 CHRM5P08912 532 aaPredicted RBP1.36□□□□□ -2.19
LINC00643-201ENST00000334389 MYZAPP0CAP1 466 aa1.36□□□□□ -2.19
LINC00643-201ENST00000334389 POU2F1P14859 743 aa1.36□□□□□ -2.19
LINC00643-201ENST00000334389 ABOP16442 354 aa1.36□□□□□ -2.19
LINC00643-201ENST00000334389 TPSB2P20231 275 aa1.36□□□□□ -2.19
LINC00643-201ENST00000334389 FBLP22087 321 aaKnown RBP1.36□□□□□ -2.19
LINC00643-201ENST00000334389 SERPINB6P35237 376 aa1.36□□□□□ -2.19
LINC00643-201ENST00000334389 SERPINF1P36955 418 aa1.36□□□□□ -2.19
LINC00643-201ENST00000334389 CFHR2P36980 270 aa1.36□□□□□ -2.19
LINC00643-201ENST00000334389 PSMB10P40306 273 aa1.36□□□□□ -2.19
LINC00643-201ENST00000334389 BCL6P41182 706 aa1.36□□□□□ -2.19
LINC00643-201ENST00000334389 MAP3K8P41279 467 aa1.36□□□□□ -2.19
LINC00643-201ENST00000334389 SGSHP51688 502 aa1.36□□□□□ -2.19
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms