RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 CPA6Q8N4T0 437 aa6.16□□□□□ -1.42
VPS35-201ENST00000299138 ADIPOR1Q96A54 375 aa6.16□□□□□ -1.42
VPS35-201ENST00000299138 PPM1MQ96MI6 270 aa6.16□□□□□ -1.42
VPS35-201ENST00000299138 PANX1Q96RD7 426 aa6.16□□□□□ -1.42
VPS35-201ENST00000299138 TIGARQ9NQ88 270 aa6.16□□□□□ -1.42
VPS35-201ENST00000299138 TLR8Q9NR97 1041 aaKnown RBP6.16□□□□□ -1.42
VPS35-201ENST00000299138 HCN2Q9UL51 889 aa6.16□□□□□ -1.42
VPS35-201ENST00000299138 FZD1Q9UP38 647 aa6.16□□□□□ -1.42
VPS35-201ENST00000299138 PCDHGA6Q9Y5G7 932 aa6.16□□□□□ -1.42
VPS35-201ENST00000299138 MRPL42Q9Y6G3 142 aaKnown RBP6.16□□□□□ -1.42
VPS35-201ENST00000299138 OR2A25A4D2G3 310 aa6.15□□□□□ -1.42
VPS35-201ENST00000299138 RFXANKO14593 260 aa6.15□□□□□ -1.42
VPS35-201ENST00000299138 ITPKAP23677 461 aa6.15□□□□□ -1.42
VPS35-201ENST00000299138 CSNK2A1P68400 391 aaPredicted RBP6.15□□□□□ -1.42
VPS35-201ENST00000299138 EMX1Q04741 257 aaPredicted RBP6.15□□□□□ -1.42
VPS35-201ENST00000299138 RASGEF1BQ0VAM2 473 aa6.15□□□□□ -1.42
VPS35-201ENST00000299138 IQCCQ4KMZ1 466 aa6.15□□□□□ -1.42
VPS35-201ENST00000299138 ZNF551Q7Z340 670 aaPredicted RBP6.15□□□□□ -1.42
VPS35-201ENST00000299138 DTWD1Q8N5C7 304 aa6.15□□□□□ -1.42
VPS35-201ENST00000299138 DTX3Q8N9I9 347 aa6.15□□□□□ -1.42
VPS35-201ENST00000299138 CSNK2A3Q8NEV1 391 aa6.15□□□□□ -1.42
VPS35-201ENST00000299138 SLC5A11Q8WWX8 675 aa6.15□□□□□ -1.42
VPS35-201ENST00000299138 ST8SIA2Q92186 375 aa6.15□□□□□ -1.42
VPS35-201ENST00000299138 MRGPRX2Q96LB1 330 aa6.15□□□□□ -1.42
VPS35-201ENST00000299138 PARK7Q99497 189 aaKnown RBP6.15□□□□□ -1.42
VPS35-201ENST00000299138 SULT4A1Q9BR01 284 aa6.15□□□□□ -1.42
VPS35-201ENST00000299138 MED18Q9BUE0 208 aa6.15□□□□□ -1.42
VPS35-201ENST00000299138 OR51V1Q9H2C8 321 aa6.15□□□□□ -1.42
VPS35-201ENST00000299138 C12orf10Q9HB07 376 aa6.15□□□□□ -1.42
VPS35-201ENST00000299138 MIOSQ9NXC5 875 aa6.15□□□□□ -1.42
VPS35-201ENST00000299138 CYB5R1Q9UHQ9 305 aa6.15□□□□□ -1.42
VPS35-201ENST00000299138 PCDHB9Q9Y5E1 797 aa6.15□□□□□ -1.42
VPS35-201ENST00000299138 RPS10-NUDT3A0A1W2PQS6 291 aa6.15□□□□□ -1.42
VPS35-201ENST00000299138 MBLAC1A4D2B0 266 aaPredicted RBP6.15□□□□□ -1.42
VPS35-201ENST00000299138 FZD9O00144 591 aa6.15□□□□□ -1.42
VPS35-201ENST00000299138 XKRYO14609 159 aa6.15□□□□□ -1.42
VPS35-201ENST00000299138 CAPN5O15484 640 aaPredicted RBP6.15□□□□□ -1.42
VPS35-201ENST00000299138 PRAMEF11O60813 436 aa6.15□□□□□ -1.42
VPS35-201ENST00000299138 ATP6AP2O75787 350 aa6.15□□□□□ -1.42
VPS35-201ENST00000299138 PIAS1O75925 651 aa6.15□□□□□ -1.42
VPS35-201ENST00000299138 SCAF4O95104 1147 aaKnown RBP6.15□□□□□ -1.42
VPS35-201ENST00000299138 WISP3O95389 354 aaPredicted RBP6.15□□□□□ -1.42
VPS35-201ENST00000299138 IFNA1P01562 189 aa6.15□□□□□ -1.42
VPS35-201ENST00000299138 MPC1LP0DKB6 136 aa6.15□□□□□ -1.42
VPS35-201ENST00000299138 RPS10P46783 165 aaKnown RBP6.15□□□□□ -1.42
VPS35-201ENST00000299138 RAG2P55895 527 aa6.15□□□□□ -1.42
VPS35-201ENST00000299138 SLC26A5P58743 744 aa6.15□□□□□ -1.42
VPS35-201ENST00000299138 NPRL3Q12980 569 aa6.15□□□□□ -1.42
VPS35-201ENST00000299138 VGLL4Q14135 290 aa6.15□□□□□ -1.42
VPS35-201ENST00000299138 CTF1Q16619 201 aa6.15□□□□□ -1.42
VPS35-201ENST00000299138 XAF1Q6GPH4 301 aa6.15□□□□□ -1.42
VPS35-201ENST00000299138 RTL4Q6ZR62 310 aa6.15□□□□□ -1.42
VPS35-201ENST00000299138 SSX7Q7RTT5 188 aa6.15□□□□□ -1.42
VPS35-201ENST00000299138 LYSMD2Q8IV50 215 aa6.15□□□□□ -1.42
VPS35-201ENST00000299138 ARRDC4Q8NCT1 418 aa6.15□□□□□ -1.42
VPS35-201ENST00000299138 FAM156AQ8NDB6 213 aa6.15□□□□□ -1.42
VPS35-201ENST00000299138 OR5T2Q8NGG2 359 aa6.15□□□□□ -1.42
VPS35-201ENST00000299138 ZNF563Q8TA94 476 aa6.15□□□□□ -1.42
VPS35-201ENST00000299138 GEMIN6Q8WXD5 167 aaKnown RBP6.15□□□□□ -1.42
VPS35-201ENST00000299138 CDCA5Q96FF9 252 aa6.15□□□□□ -1.42
VPS35-201ENST00000299138 CDKN2AIPNLQ96HQ2 116 aa6.15□□□□□ -1.42
VPS35-201ENST00000299138 ZNF583Q96ND8 569 aa6.15□□□□□ -1.42
VPS35-201ENST00000299138 SAMD11Q96NU1 681 aa6.15□□□□□ -1.42
VPS35-201ENST00000299138 PSKH2Q96QS6 385 aa6.15□□□□□ -1.42
VPS35-201ENST00000299138 HOXD1Q9GZZ0 328 aa6.15□□□□□ -1.42
VPS35-201ENST00000299138 AGO3Q9H9G7 860 aaKnown RBP6.15□□□□□ -1.42
VPS35-201ENST00000299138 TMEM39AQ9NV64 488 aa6.15□□□□□ -1.42
VPS35-201ENST00000299138 HCN4Q9Y3Q4 1203 aa6.15□□□□□ -1.42
VPS35-201ENST00000299138 PCDHGA5Q9Y5G8 931 aa6.15□□□□□ -1.42
VPS35-201ENST00000299138 A0A0G2JMP0 313 aa6.15□□□□□ -1.42
VPS35-201ENST00000299138 C2orf92A0A1B0GVN3 265 aa6.15□□□□□ -1.42
VPS35-201ENST00000299138 PAGE1O75459 146 aa6.15□□□□□ -1.42
VPS35-201ENST00000299138 ECI2O75521 394 aa6.15□□□□□ -1.42
VPS35-201ENST00000299138 DCNP07585 359 aaKnown RBP6.15□□□□□ -1.42
VPS35-201ENST00000299138 SNRNP70P08621 437 aaKnown RBP6.15□□□□□ -1.42
VPS35-201ENST00000299138 KDELR2P33947 212 aa6.15□□□□□ -1.42
VPS35-201ENST00000299138 CASP3P42574 277 aa6.15□□□□□ -1.42
VPS35-201ENST00000299138 GRB2P62993 217 aaKnown RBP6.15□□□□□ -1.42
VPS35-201ENST00000299138 LAPTM5Q13571 262 aa6.15□□□□□ -1.42
VPS35-201ENST00000299138 TCEA2Q15560 299 aa6.15□□□□□ -1.42
VPS35-201ENST00000299138 PPP1R3AQ16821 1122 aa6.15□□□□□ -1.42
VPS35-201ENST00000299138 DUOXA1Q1HG43 343 aa6.15□□□□□ -1.42
VPS35-201ENST00000299138 MANEALQ5VSG8 457 aa6.15□□□□□ -1.42
VPS35-201ENST00000299138 CES4AQ5XG92 561 aa6.15□□□□□ -1.42
VPS35-201ENST00000299138 TRIM46Q7Z4K8 759 aa6.15□□□□□ -1.42
VPS35-201ENST00000299138 DENND1CQ8IV53 801 aa6.15□□□□□ -1.42
VPS35-201ENST00000299138 TCTE3Q8IZS6 198 aa6.15□□□□□ -1.42
VPS35-201ENST00000299138 C2orf73Q8N5S3 287 aaPredicted RBP6.15□□□□□ -1.42
VPS35-201ENST00000299138 OR4M2Q8NGB6 313 aa6.15□□□□□ -1.42
VPS35-201ENST00000299138 BORCS7Q96B45 105 aa6.15□□□□□ -1.42
VPS35-201ENST00000299138 PIWIL1Q96J94 861 aaKnown RBP6.15□□□□□ -1.42
VPS35-201ENST00000299138 TXN2Q99757 166 aa6.15□□□□□ -1.42
VPS35-201ENST00000299138 SH3BGRL2Q9UJC5 107 aa6.15□□□□□ -1.42
VPS35-201ENST00000299138 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP6.15□□□□□ -1.43
VPS35-201ENST00000299138 CCL15-CCL14A0A0B4J2E2 113 aa6.15□□□□□ -1.43
VPS35-201ENST00000299138 H7C1Q1 480 aa6.15□□□□□ -1.43
VPS35-201ENST00000299138 J3QR89 54 aa6.15□□□□□ -1.43
VPS35-201ENST00000299138 OR7A17O14581 309 aa6.15□□□□□ -1.43
VPS35-201ENST00000299138 SYN3O14994 580 aa6.15□□□□□ -1.43
VPS35-201ENST00000299138 PRAF2O60831 178 aa6.15□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms