RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 HIST1H2ACQ93077 130 aa14.7□□□□□ -0.06
SHH-201ENST00000297261 SPATA9Q9BWV2 254 aa14.7□□□□□ -0.06
SHH-201ENST00000297261 TTLL2Q9BWV7 592 aa14.7□□□□□ -0.06
SHH-201ENST00000297261 MGAT4BQ9UQ53 548 aa14.7□□□□□ -0.06
SHH-201ENST00000297261 HMX3A6NHT5 357 aa14.7□□□□□ -0.06
SHH-201ENST00000297261 CD8B2A6NJW9 211 aa14.7□□□□□ -0.06
SHH-201ENST00000297261 LYRM1O43325 122 aa14.7□□□□□ -0.06
SHH-201ENST00000297261 HMGN1P05114 100 aa14.7□□□□□ -0.06
SHH-201ENST00000297261 CD8BP10966 210 aa14.7□□□□□ -0.06
SHH-201ENST00000297261 PSMA6P60900 246 aaKnown RBP14.7□□□□□ -0.06
SHH-201ENST00000297261 SPIN4Q56A73 249 aa14.7□□□□□ -0.06
SHH-201ENST00000297261 GTF2IRD2BQ6EKJ0 949 aa14.7□□□□□ -0.06
SHH-201ENST00000297261 ZNF783Q6ZMS7 281 aa14.7□□□□□ -0.06
SHH-201ENST00000297261 GTF2IRD2Q86UP8 949 aa14.7□□□□□ -0.06
SHH-201ENST00000297261 BCL7CQ8WUZ0 217 aaPredicted RBP14.7□□□□□ -0.06
SHH-201ENST00000297261 FERD3LQ96RJ6 166 aa14.7□□□□□ -0.06
SHH-201ENST00000297261 PIP5K1AQ99755 562 aa14.7□□□□□ -0.06
SHH-201ENST00000297261 PCDHB11Q9Y5F2 797 aa14.7□□□□□ -0.06
SHH-201ENST00000297261 SBF1O95248 1867 aa14.7□□□□□ -0.06
SHH-201ENST00000297261 NUP214P35658 2090 aaPredicted RBP14.7□□□□□ -0.06
SHH-201ENST00000297261 TMEM221A6NGB7 291 aa14.7□□□□□ -0.06
SHH-201ENST00000297261 GNB5O14775 395 aa14.7□□□□□ -0.06
SHH-201ENST00000297261 OR10H2O60403 315 aa14.7□□□□□ -0.06
SHH-201ENST00000297261 HK1P19367 917 aa14.7□□□□□ -0.06
SHH-201ENST00000297261 DRD5P21918 477 aa14.7□□□□□ -0.06
SHH-201ENST00000297261 KEAP1Q14145 624 aa14.7□□□□□ -0.06
SHH-201ENST00000297261 ATXN7L3Q14CW9 347 aaPredicted RBP14.7□□□□□ -0.06
SHH-201ENST00000297261 INAVAQ3KP66 663 aa14.7□□□□□ -0.06
SHH-201ENST00000297261 OR2T35Q8NGX2 323 aa14.7□□□□□ -0.06
SHH-201ENST00000297261 RPLP0P6Q8NHW5 317 aa14.7□□□□□ -0.06
SHH-201ENST00000297261 PCNPQ8WW12 178 aaKnown RBP14.7□□□□□ -0.06
SHH-201ENST00000297261 GTF2H4Q92759 462 aa14.7□□□□□ -0.06
SHH-201ENST00000297261 KLF16Q9BXK1 252 aaPredicted RBP14.7□□□□□ -0.06
SHH-201ENST00000297261 RETREG1Q9H6L5 497 aa14.7□□□□□ -0.06
SHH-201ENST00000297261 TCF7L1Q9HCS4 588 aa14.7□□□□□ -0.06
SHH-201ENST00000297261 PLCL2Q9UPR0 1127 aa14.7□□□□□ -0.06
SHH-201ENST00000297261 LOC105369274A0A096LPK9 316 aa14.7□□□□□ -0.06
SHH-201ENST00000297261 UBFD1O14562 309 aaKnown RBP14.7□□□□□ -0.06
SHH-201ENST00000297261 GABARAPO95166 117 aa14.7□□□□□ -0.06
SHH-201ENST00000297261 CSN2P05814 226 aa14.7□□□□□ -0.06
SHH-201ENST00000297261 EPHX1P07099 455 aa14.7□□□□□ -0.06
SHH-201ENST00000297261 LAMP1P11279 417 aa14.7□□□□□ -0.06
SHH-201ENST00000297261 DDX6P26196 483 aaKnown RBP eCLIP14.7□□□□□ -0.06
SHH-201ENST00000297261 SF1Q15637 639 aaKnown RBP14.7□□□□□ -0.06
SHH-201ENST00000297261 HSD17B12Q53GQ0 312 aa14.7□□□□□ -0.06
SHH-201ENST00000297261 ARSIQ5FYB1 569 aa14.7□□□□□ -0.06
SHH-201ENST00000297261 SHFQ7M4L6 423 aa14.7□□□□□ -0.06
SHH-201ENST00000297261 ANKRD33Q7Z3H0 272 aa14.7□□□□□ -0.06
SHH-201ENST00000297261 PEG10Q86TG7 708 aaKnown RBP14.7□□□□□ -0.06
SHH-201ENST00000297261 LYSMD2Q8IV50 215 aa14.7□□□□□ -0.06
SHH-201ENST00000297261 OR4N4Q8N0Y3 316 aa14.7□□□□□ -0.06
SHH-201ENST00000297261 GDPD1Q8N9F7 314 aa14.7□□□□□ -0.06
SHH-201ENST00000297261 HCFC1R1Q9NWW0 138 aa14.7□□□□□ -0.06
SHH-201ENST00000297261 HPF1Q9NWY4 346 aa14.7□□□□□ -0.06
SHH-201ENST00000297261 NINQ8N4C6 2090 aa14.69□□□□□ -0.06
SHH-201ENST00000297261 ALAS2P22557 587 aa14.69□□□□□ -0.06
SHH-201ENST00000297261 KCNC1P48547 511 aa14.69□□□□□ -0.06
SHH-201ENST00000297261 PRPF38BQ5VTL8 546 aaKnown RBP14.69□□□□□ -0.06
SHH-201ENST00000297261 ZDHHC20Q5W0Z9 365 aa14.69□□□□□ -0.06
SHH-201ENST00000297261 GDPD4Q6W3E5 623 aa14.69□□□□□ -0.06
SHH-201ENST00000297261 ZNF438Q7Z4V0 828 aa14.69□□□□□ -0.06
SHH-201ENST00000297261 GJD3Q8N144 294 aa14.69□□□□□ -0.06
SHH-201ENST00000297261 C12orf76Q8N812 135 aaPredicted RBP14.69□□□□□ -0.06
SHH-201ENST00000297261 B3GNT7Q8NFL0 401 aa14.69□□□□□ -0.06
SHH-201ENST00000297261 ADAMTS16Q8TE57 1224 aa14.69□□□□□ -0.06
SHH-201ENST00000297261 CREB3L1Q96BA8 519 aa14.69□□□□□ -0.06
SHH-201ENST00000297261 TRIM43Q96BQ3 446 aaPredicted RBP14.69□□□□□ -0.06
SHH-201ENST00000297261 CNDP2Q96KP4 475 aaKnown RBP14.69□□□□□ -0.06
SHH-201ENST00000297261 MGME1Q9BQP7 344 aa14.69□□□□□ -0.06
SHH-201ENST00000297261 BRINP2Q9C0B6 783 aa14.69□□□□□ -0.06
SHH-201ENST00000297261 BTBD1Q9H0C5 482 aa14.69□□□□□ -0.06
SHH-201ENST00000297261 SAV1Q9H4B6 383 aaPredicted RBP14.69□□□□□ -0.06
SHH-201ENST00000297261 GORASP2Q9H8Y8 452 aa14.69□□□□□ -0.06
SHH-201ENST00000297261 TMEM27Q9HBJ8 222 aa14.69□□□□□ -0.06
SHH-201ENST00000297261 ZNF334Q9HCZ1 680 aaPredicted RBP14.69□□□□□ -0.06
SHH-201ENST00000297261 RABL2AQ9UBK7 228 aaPredicted RBP14.69□□□□□ -0.06
SHH-201ENST00000297261 NUP205Q92621 2012 aa14.69□□□□□ -0.06
SHH-201ENST00000297261 OTOFQ9HC10 1997 aa14.69□□□□□ -0.06
SHH-201ENST00000297261 GSTM3P21266 225 aa14.69□□□□□ -0.06
SHH-201ENST00000297261 EVI2BP34910 448 aa14.69□□□□□ -0.06
SHH-201ENST00000297261 BMPR1AP36894 532 aa14.69□□□□□ -0.06
SHH-201ENST00000297261 GUCA1AP43080 201 aaPredicted RBP14.69□□□□□ -0.06
SHH-201ENST00000297261 NTHL1P78549 312 aa14.69□□□□□ -0.06
SHH-201ENST00000297261 SNTB2Q13425 540 aaKnown RBP14.69□□□□□ -0.06
SHH-201ENST00000297261 TMEM44Q2T9K0 475 aa14.69□□□□□ -0.06
SHH-201ENST00000297261 PEX13Q92968 403 aa14.69□□□□□ -0.06
SHH-201ENST00000297261 IRF7Q92985 503 aa14.69□□□□□ -0.06
SHH-201ENST00000297261 UBE2FQ969M7 185 aa14.69□□□□□ -0.06
SHH-201ENST00000297261 NECTIN4Q96NY8 510 aa14.69□□□□□ -0.06
SHH-201ENST00000297261 SECISBP2Q96T21 854 aaKnown RBP14.69□□□□□ -0.06
SHH-201ENST00000297261 FOLH1BQ9HBA9 442 aa14.69□□□□□ -0.06
SHH-201ENST00000297261 TRIM36Q9NQ86 728 aa14.69□□□□□ -0.06
SHH-201ENST00000297261 CDH7Q9ULB5 785 aa14.69□□□□□ -0.06
SHH-201ENST00000297261 H3BSH0 61 aa14.69□□□□□ -0.06
SHH-201ENST00000297261 PCDH17O14917 1159 aa14.69□□□□□ -0.06
SHH-201ENST00000297261 RPS17P08708 135 aaKnown RBP14.69□□□□□ -0.06
SHH-201ENST00000297261 IGFBP4P22692 258 aa14.69□□□□□ -0.06
SHH-201ENST00000297261 HOXC13P31276 330 aa14.69□□□□□ -0.06
SHH-201ENST00000297261 RPS26P62854 115 aaKnown RBP14.69□□□□□ -0.06
SHH-201ENST00000297261 PRR5P85299 388 aa14.69□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms