RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 ATP6AP1Q15904 470 aa18.36■□□□□ 0.53
UPF1-201ENST00000262803 Q6ZVL8 140 aa18.36■□□□□ 0.53
UPF1-201ENST00000262803 OR51I1Q9H343 314 aa18.36■□□□□ 0.53
UPF1-201ENST00000262803 JUPP14923 745 aa18.36■□□□□ 0.53
UPF1-201ENST00000262803 PROZP22891 400 aa18.36■□□□□ 0.53
UPF1-201ENST00000262803 RNF130Q86XS8 419 aa18.36■□□□□ 0.53
UPF1-201ENST00000262803 PRR11Q96HE9 360 aaPredicted RBP18.36■□□□□ 0.53
UPF1-201ENST00000262803 MEAF6Q9HAF1 191 aa18.36■□□□□ 0.53
UPF1-201ENST00000262803 CCM2LQ9NUG4 571 aaPredicted RBP18.36■□□□□ 0.53
UPF1-201ENST00000262803 EIF3KQ9UBQ5 218 aaKnown RBP18.36■□□□□ 0.53
UPF1-201ENST00000262803 BLOC1S5-TXNDC5H3BN57 136 aa18.36■□□□□ 0.53
UPF1-201ENST00000262803 RPP14O95059 124 aaKnown RBP18.36■□□□□ 0.53
UPF1-201ENST00000262803 SNAP29O95721 258 aa18.36■□□□□ 0.53
UPF1-201ENST00000262803 CH25HO95992 272 aa18.36■□□□□ 0.53
UPF1-201ENST00000262803 KCNAB2Q13303 367 aa18.36■□□□□ 0.53
UPF1-201ENST00000262803 GRM7Q14831 915 aa18.36■□□□□ 0.53
UPF1-201ENST00000262803 RAB6CQ53S08 254 aa18.36■□□□□ 0.53
UPF1-201ENST00000262803 C1orf189Q5VU69 101 aa18.36■□□□□ 0.53
UPF1-201ENST00000262803 TOR1AIP2Q8NFQ8 470 aa18.36■□□□□ 0.53
UPF1-201ENST00000262803 OR4K1Q8NGD4 311 aa18.36■□□□□ 0.53
UPF1-201ENST00000262803 NSMAFQ92636 917 aa18.36■□□□□ 0.53
UPF1-201ENST00000262803 RAB6CQ9H0N0 254 aa18.36■□□□□ 0.53
UPF1-201ENST00000262803 RNF186Q9NXI6 227 aa18.36■□□□□ 0.53
UPF1-201ENST00000262803 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP18.36■□□□□ 0.53
UPF1-201ENST00000262803 UNC119BA6NIH7 251 aa18.36■□□□□ 0.53
UPF1-201ENST00000262803 SLC33A1O00400 549 aaPredicted RBP18.36■□□□□ 0.53
UPF1-201ENST00000262803 OR7A10O76100 309 aa18.36■□□□□ 0.53
UPF1-201ENST00000262803 VSX2P58304 361 aaPredicted RBP18.36■□□□□ 0.53
UPF1-201ENST00000262803 ZNF252P-AS1Q0IIN9 211 aa18.36■□□□□ 0.53
UPF1-201ENST00000262803 ZNF280BQ86YH2 543 aa18.36■□□□□ 0.53
UPF1-201ENST00000262803 URM1Q9BTM9 101 aaKnown RBP18.36■□□□□ 0.53
UPF1-201ENST00000262803 MAFKO60675 156 aa18.36■□□□□ 0.53
UPF1-201ENST00000262803 HNF1BP35680 557 aa18.36■□□□□ 0.53
UPF1-201ENST00000262803 NIPAL4Q0D2K0 466 aa18.36■□□□□ 0.53
UPF1-201ENST00000262803 MELKQ14680 651 aa18.36■□□□□ 0.53
UPF1-201ENST00000262803 ARL6IP1Q15041 203 aa18.36■□□□□ 0.53
UPF1-201ENST00000262803 DUS1LQ6P1R4 473 aaKnown RBP18.36■□□□□ 0.53
UPF1-201ENST00000262803 SHQ1Q6PI26 577 aaKnown RBP18.36■□□□□ 0.53
UPF1-201ENST00000262803 FBXO46Q6PJ61 603 aaPredicted RBP18.36■□□□□ 0.53
UPF1-201ENST00000262803 SUSD1Q6UWL2 747 aa18.36■□□□□ 0.53
UPF1-201ENST00000262803 SLC22A16Q86VW1 577 aa18.36■□□□□ 0.53
UPF1-201ENST00000262803 TXLNGYQ9BZA5 131 aa18.36■□□□□ 0.53
UPF1-201ENST00000262803 PELI2Q9HAT8 420 aa18.36■□□□□ 0.53
UPF1-201ENST00000262803 LDB2O43679 373 aa18.35■□□□□ 0.53
UPF1-201ENST00000262803 XPNPEP2O43895 674 aa18.35■□□□□ 0.53
UPF1-201ENST00000262803 CSTAP01040 98 aa18.35■□□□□ 0.53
UPF1-201ENST00000262803 GKN3PP0CG01 181 aa18.35■□□□□ 0.53
UPF1-201ENST00000262803 ACTA2P62736 377 aa18.35■□□□□ 0.53
UPF1-201ENST00000262803 ACTG2P63267 376 aa18.35■□□□□ 0.53
UPF1-201ENST00000262803 ALG10BQ5I7T1 473 aa18.35■□□□□ 0.53
UPF1-201ENST00000262803 ZNF778Q96MU6 729 aa18.35■□□□□ 0.53
UPF1-201ENST00000262803 CHIAQ9BZP6 476 aa18.35■□□□□ 0.53
UPF1-201ENST00000262803 OR10A4Q9H209 315 aa18.35■□□□□ 0.53
UPF1-201ENST00000262803 TMEM45AQ9NWC5 275 aa18.35■□□□□ 0.53
UPF1-201ENST00000262803 HEPACAM2A8MVW5 462 aa18.35■□□□□ 0.53
UPF1-201ENST00000262803 IQCF3P0C7M6 154 aa18.35■□□□□ 0.53
UPF1-201ENST00000262803 GMPRP36959 345 aa18.35■□□□□ 0.53
UPF1-201ENST00000262803 GALNT12Q8IXK2 581 aa18.35■□□□□ 0.53
UPF1-201ENST00000262803 ZNF420Q8TAQ5 688 aaPredicted RBP18.35■□□□□ 0.53
UPF1-201ENST00000262803 IGSF8Q969P0 613 aa18.35■□□□□ 0.53
UPF1-201ENST00000262803 ZNF559Q9BR84 538 aa18.35■□□□□ 0.53
UPF1-201ENST00000262803 RGPD8O14715 1765 aaPredicted RBP18.35■□□□□ 0.53
UPF1-201ENST00000262803 H0YAE9 185 aa18.35■□□□□ 0.53
UPF1-201ENST00000262803 PROM1O43490 865 aa18.35■□□□□ 0.53
UPF1-201ENST00000262803 ELK4P28324 431 aa18.35■□□□□ 0.53
UPF1-201ENST00000262803 ZNF709Q8N972 641 aa18.35■□□□□ 0.53
UPF1-201ENST00000262803 HDAC2Q92769 488 aaKnown RBP18.35■□□□□ 0.53
UPF1-201ENST00000262803 ZNF471Q9BX82 626 aaPredicted RBP18.35■□□□□ 0.53
UPF1-201ENST00000262803 CREBZFQ9NS37 354 aa18.35■□□□□ 0.53
UPF1-201ENST00000262803 APOBEC3BQ9UH17 382 aaKnown RBP18.35■□□□□ 0.53
UPF1-201ENST00000262803 KCNIP3Q9Y2W7 256 aa18.35■□□□□ 0.53
UPF1-201ENST00000262803 A0A1W2PPL8 197 aa18.35■□□□□ 0.53
UPF1-201ENST00000262803 H2BFMP0C1H6 154 aa18.35■□□□□ 0.53
UPF1-201ENST00000262803 HLA-EP13747 358 aa18.35■□□□□ 0.53
UPF1-201ENST00000262803 TYRP1P17643 537 aa18.35■□□□□ 0.53
UPF1-201ENST00000262803 CLCN2P51788 898 aa18.35■□□□□ 0.53
UPF1-201ENST00000262803 WNT7BP56706 349 aa18.35■□□□□ 0.53
UPF1-201ENST00000262803 KIAA0895LQ68EN5 471 aa18.35■□□□□ 0.53
UPF1-201ENST00000262803 DCDC5Q6ZRR9 648 aa18.35■□□□□ 0.53
UPF1-201ENST00000262803 IL22RA1Q8N6P7 574 aa18.35■□□□□ 0.53
UPF1-201ENST00000262803 OR2T33Q8NG76 320 aa18.35■□□□□ 0.53
UPF1-201ENST00000262803 STRA6Q9BX79 667 aa18.35■□□□□ 0.53
UPF1-201ENST00000262803 ZDHHC7Q9NXF8 308 aa18.35■□□□□ 0.53
UPF1-201ENST00000262803 CDRT1O95170 752 aa18.34■□□□□ 0.53
UPF1-201ENST00000262803 ZNF182P17025 639 aaPredicted RBP18.34■□□□□ 0.53
UPF1-201ENST00000262803 MLC1Q15049 377 aa18.34■□□□□ 0.53
UPF1-201ENST00000262803 CSNK1A1LQ8N752 337 aa18.34■□□□□ 0.53
UPF1-201ENST00000262803 OR2L2Q8NH16 312 aa18.34■□□□□ 0.53
UPF1-201ENST00000262803 OR56A3Q8NH54 315 aa18.34■□□□□ 0.53
UPF1-201ENST00000262803 ISOC1Q96CN7 298 aa18.34■□□□□ 0.53
UPF1-201ENST00000262803 SLC5A7Q9GZV3 580 aa18.34■□□□□ 0.53
UPF1-201ENST00000262803 MYOCOSA0A1B0GUC4 107 aa18.34■□□□□ 0.53
UPF1-201ENST00000262803 LRRN3E7EW58 273 aa18.34■□□□□ 0.53
UPF1-201ENST00000262803 SRCP12931 536 aa18.34■□□□□ 0.53
UPF1-201ENST00000262803 ACY1Q03154 408 aa18.34■□□□□ 0.53
UPF1-201ENST00000262803 RAB33AQ14088 237 aa18.34■□□□□ 0.53
UPF1-201ENST00000262803 ARHGAP11AQ6P4F7 1023 aa18.34■□□□□ 0.53
UPF1-201ENST00000262803 BARD1Q99728 777 aaKnown RBP18.34■□□□□ 0.53
UPF1-201ENST00000262803 TMED9Q9BVK6 235 aa18.34■□□□□ 0.53
UPF1-201ENST00000262803 LRRN3Q9H3W5 708 aa18.34■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms