RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 PPIBP23284 216 aaKnown RBP20.26■□□□□ 0.83
TRIM28-201ENST00000253024 SSX1Q16384 188 aa20.26■□□□□ 0.83
TRIM28-201ENST00000253024 CCBE1Q6UXH8 406 aaPredicted RBP20.26■□□□□ 0.83
TRIM28-201ENST00000253024 PUM2Q8TB72 1066 aaKnown RBP eCLIP20.26■□□□□ 0.83
TRIM28-201ENST00000253024 DMRTB1Q96MA1 342 aa20.26■□□□□ 0.83
TRIM28-201ENST00000253024 CERS4Q9HA82 394 aa20.26■□□□□ 0.83
TRIM28-201ENST00000253024 TIGARQ9NQ88 270 aa20.26■□□□□ 0.83
TRIM28-201ENST00000253024 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP20.26■□□□□ 0.838e-8■□□□□ 8.8
TRIM28-201ENST00000253024 NPIPB8E9PQR5 432 aa20.26■□□□□ 0.83
TRIM28-201ENST00000253024 TBX6O95947 436 aaPredicted RBP20.26■□□□□ 0.83
TRIM28-201ENST00000253024 CTNNB1P35222 781 aa20.26■□□□□ 0.83
TRIM28-201ENST00000253024 GRK3P35626 688 aa20.26■□□□□ 0.83
TRIM28-201ENST00000253024 ATAD3BQ5T9A4 648 aa20.26■□□□□ 0.83
TRIM28-201ENST00000253024 C6orf120Q7Z4R8 191 aa20.26■□□□□ 0.83
TRIM28-201ENST00000253024 STARD8Q92502 1023 aa20.26■□□□□ 0.83
TRIM28-201ENST00000253024 EFCAB11Q9BUY7 163 aa20.26■□□□□ 0.83
TRIM28-201ENST00000253024 RC3H2Q9HBD1 1191 aaKnown RBP20.26■□□□□ 0.83
TRIM28-201ENST00000253024 SEC14L3Q9UDX4 400 aa20.26■□□□□ 0.83
TRIM28-201ENST00000253024 ATP6V1HQ9UI12 483 aa20.26■□□□□ 0.83
TRIM28-201ENST00000253024 TBX21Q9UL17 535 aa20.26■□□□□ 0.83
TRIM28-201ENST00000253024 LOC110117498-PIK3R3F6TDL0 507 aa20.25■□□□□ 0.83
TRIM28-201ENST00000253024 TLR4O00206 839 aa20.25■□□□□ 0.83
TRIM28-201ENST00000253024 TMPRSS11DO60235 418 aa20.25■□□□□ 0.83
TRIM28-201ENST00000253024 CYP17A1P05093 508 aa20.25■□□□□ 0.83
TRIM28-201ENST00000253024 GSTT2P0CG29 244 aa20.25■□□□□ 0.83
TRIM28-201ENST00000253024 GSTT2BP0CG30 244 aa20.25■□□□□ 0.83
TRIM28-201ENST00000253024 TTC23LQ6PF05 361 aa20.25■□□□□ 0.83
TRIM28-201ENST00000253024 POF1BQ8WVV4 589 aa20.25■□□□□ 0.83
TRIM28-201ENST00000253024 TBC1D20Q96BZ9 403 aa20.25■□□□□ 0.83
TRIM28-201ENST00000253024 REPS1Q96D71 796 aa20.25■□□□□ 0.83
TRIM28-201ENST00000253024 PAWRQ96IZ0 340 aaKnown RBP20.25■□□□□ 0.83
TRIM28-201ENST00000253024 NEDD4LQ96PU5 975 aa20.25■□□□□ 0.83
TRIM28-201ENST00000253024 TRPM6Q9BX84 2022 aa20.25■□□□□ 0.83
TRIM28-201ENST00000253024 TMCC3Q9ULS5 477 aa20.25■□□□□ 0.83
TRIM28-201ENST00000253024 MRPS23Q9Y3D9 190 aaKnown RBP20.25■□□□□ 0.83
TRIM28-201ENST00000253024 PCDH8O95206 1070 aa20.25■□□□□ 0.83
TRIM28-201ENST00000253024 CLEC2LP0C7M8 214 aa20.25■□□□□ 0.83
TRIM28-201ENST00000253024 GABRB1P18505 474 aa20.25■□□□□ 0.83
TRIM28-201ENST00000253024 CD72P21854 359 aa20.25■□□□□ 0.83
TRIM28-201ENST00000253024 BUD31P41223 144 aaPredicted RBP20.25■□□□□ 0.83
TRIM28-201ENST00000253024 ARHGAP15Q53QZ3 475 aa20.25■□□□□ 0.83
TRIM28-201ENST00000253024 C7orf57Q8NEG2 295 aa20.25■□□□□ 0.83
TRIM28-201ENST00000253024 IMP3Q9NV31 184 aaKnown RBP20.25■□□□□ 0.83
TRIM28-201ENST00000253024 CLN6Q9NWW5 311 aa20.25■□□□□ 0.83
TRIM28-201ENST00000253024 MALT1Q9UDY8 824 aa20.25■□□□□ 0.83
TRIM28-201ENST00000253024 PLEKHM1Q9Y4G2 1056 aa20.25■□□□□ 0.83
TRIM28-201ENST00000253024 SDK1Q7Z5N4 2213 aa20.25■□□□□ 0.83
TRIM28-201ENST00000253024 LCMT2O60294 686 aaKnown RBP20.25■□□□□ 0.83
TRIM28-201ENST00000253024 PTPN2P17706 415 aa20.25■□□□□ 0.83
TRIM28-201ENST00000253024 CLCNKAP51800 687 aa20.25■□□□□ 0.83
TRIM28-201ENST00000253024 SF3B4Q15427 424 aaKnown RBP eCLIP20.25■□□□□ 0.835e-9■■■■□ 19.7
TRIM28-201ENST00000253024 REEP3Q6NUK4 255 aa20.25■□□□□ 0.83
TRIM28-201ENST00000253024 B3GLCTQ6Y288 498 aa20.25■□□□□ 0.83
TRIM28-201ENST00000253024 LAMA1P25391 3075 aa20.25■□□□□ 0.83
TRIM28-201ENST00000253024 HSD3B1P14060 373 aa20.24■□□□□ 0.83
TRIM28-201ENST00000253024 HSD3B2P26439 372 aa20.24■□□□□ 0.83
TRIM28-201ENST00000253024 RPS19P39019 145 aaKnown RBP20.24■□□□□ 0.83
TRIM28-201ENST00000253024 EEF1A2Q05639 463 aaKnown RBP20.24■□□□□ 0.83
TRIM28-201ENST00000253024 SPANXN2Q5MJ10 180 aa20.24■□□□□ 0.83
TRIM28-201ENST00000253024 C6orf183Q5T699 404 aa20.24■□□□□ 0.83
TRIM28-201ENST00000253024 TCTN3Q6NUS6 607 aa20.24■□□□□ 0.83
TRIM28-201ENST00000253024 SLC9B2Q86UD5 537 aa20.24■□□□□ 0.83
TRIM28-201ENST00000253024 DEPDC4Q8N2C3 294 aa20.24■□□□□ 0.83
TRIM28-201ENST00000253024 GPR151Q8TDV0 419 aa20.24■□□□□ 0.83
TRIM28-201ENST00000253024 BEX2Q9BXY8 128 aa20.24■□□□□ 0.83
TRIM28-201ENST00000253024 MMP27Q9H306 513 aa20.24■□□□□ 0.83
TRIM28-201ENST00000253024 ARAFP10398 606 aa20.24■□□□□ 0.83
TRIM28-201ENST00000253024 SOX9P48436 509 aa20.24■□□□□ 0.83
TRIM28-201ENST00000253024 SFSWAPQ12872 951 aaKnown RBP20.24■□□□□ 0.83
TRIM28-201ENST00000253024 LRRC26Q2I0M4 334 aa20.24■□□□□ 0.83
TRIM28-201ENST00000253024 AGAP7PQ5VUJ5 663 aa20.24■□□□□ 0.83
TRIM28-201ENST00000253024 GDPD3Q7L5L3 318 aa20.24■□□□□ 0.83
TRIM28-201ENST00000253024 ANKRD33Q7Z3H0 272 aa20.24■□□□□ 0.83
TRIM28-201ENST00000253024 C17orf64Q86WR6 236 aa20.24■□□□□ 0.83
TRIM28-201ENST00000253024 OR9Q1Q8NGQ5 310 aa20.24■□□□□ 0.83
TRIM28-201ENST00000253024 SLC7A13Q8TCU3 470 aa20.24■□□□□ 0.83
TRIM28-201ENST00000253024 POLR2J3Q9H1A7 115 aaKnown RBP20.24■□□□□ 0.83
TRIM28-201ENST00000253024 KCNK6Q9Y257 313 aa20.24■□□□□ 0.83
TRIM28-201ENST00000253024 PCDHGB6Q9Y5F9 930 aa20.24■□□□□ 0.83
TRIM28-201ENST00000253024 TRBV23OR9-2A0A075B6M9 112 aa20.23■□□□□ 0.83
TRIM28-201ENST00000253024 LILRB5O75023 590 aa20.23■□□□□ 0.83
TRIM28-201ENST00000253024 CLTBP09497 229 aa20.23■□□□□ 0.83
TRIM28-201ENST00000253024 ADH5P11766 374 aa20.23■□□□□ 0.83
TRIM28-201ENST00000253024 ITGA2P17301 1181 aa20.23■□□□□ 0.83
TRIM28-201ENST00000253024 UGT2B15P54855 530 aa20.23■□□□□ 0.83
TRIM28-201ENST00000253024 DCDC1P59894 354 aa20.23■□□□□ 0.83
TRIM28-201ENST00000253024 FCHO2Q0JRZ9 810 aa20.23■□□□□ 0.83
TRIM28-201ENST00000253024 GPR19Q15760 415 aa20.23■□□□□ 0.83
TRIM28-201ENST00000253024 ZNF77Q15935 545 aa20.23■□□□□ 0.83
TRIM28-201ENST00000253024 DCST1Q5T197 706 aa20.23■□□□□ 0.83
TRIM28-201ENST00000253024 OR2G6Q5TZ20 316 aa20.23■□□□□ 0.83
TRIM28-201ENST00000253024 LAX1Q8IWV1 398 aa20.23■□□□□ 0.83
TRIM28-201ENST00000253024 DTX3Q8N9I9 347 aa20.23■□□□□ 0.83
TRIM28-201ENST00000253024 ASPNQ9BXN1 380 aa20.23■□□□□ 0.83
TRIM28-201ENST00000253024 HEATR5BQ9P2D3 2071 aa20.23■□□□□ 0.83
TRIM28-201ENST00000253024 NR2F1P10589 423 aa20.23■□□□□ 0.83
TRIM28-201ENST00000253024 ACP5P13686 325 aa20.23■□□□□ 0.83
TRIM28-201ENST00000253024 MYOGP15173 224 aa20.23■□□□□ 0.83
TRIM28-201ENST00000253024 CBLP22681 906 aa20.23■□□□□ 0.83
TRIM28-201ENST00000253024 VEGFBP49765 207 aa20.23■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms