RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 KLHL3Q9UH77 587 aa10.16□□□□□ -0.78
USP28-201ENST00000003302 HAT1O14929 419 aa10.16□□□□□ -0.78
USP28-201ENST00000003302 LCMT2O60294 686 aaKnown RBP10.16□□□□□ -0.78
USP28-201ENST00000003302 FUT1P19526 365 aa10.16□□□□□ -0.78
USP28-201ENST00000003302 GJA8P48165 433 aa10.16□□□□□ -0.78
USP28-201ENST00000003302 GPR19Q15760 415 aa10.16□□□□□ -0.78
USP28-201ENST00000003302 PLEKHS1Q5SXH7 462 aa10.16□□□□□ -0.78
USP28-201ENST00000003302 FAM71E1Q6IPT2 247 aa10.16□□□□□ -0.78
USP28-201ENST00000003302 TRMT11Q7Z4G4 463 aaKnown RBP10.16□□□□□ -0.78
USP28-201ENST00000003302 AKAP14Q86UN6 197 aa10.16□□□□□ -0.78
USP28-201ENST00000003302 GALNT13Q8IUC8 556 aa10.16□□□□□ -0.78
USP28-201ENST00000003302 ZNF513Q8N8E2 541 aaPredicted RBP10.16□□□□□ -0.78
USP28-201ENST00000003302 PXYLP1Q8TE99 480 aa10.16□□□□□ -0.78
USP28-201ENST00000003302 EXOSC8Q96B26 276 aaKnown RBP10.16□□□□□ -0.78
USP28-201ENST00000003302 CTRCQ99895 268 aa10.16□□□□□ -0.78
USP28-201ENST00000003302 ASPNQ9BXN1 380 aa10.16□□□□□ -0.78
USP28-201ENST00000003302 MMP27Q9H306 513 aa10.16□□□□□ -0.78
USP28-201ENST00000003302 NEK6Q9HC98 313 aa10.16□□□□□ -0.78
USP28-201ENST00000003302 NUP210Q8TEM1 1887 aaPredicted RBP10.16□□□□□ -0.78
USP28-201ENST00000003302 TRAV19A0A0A6YYK7 116 aa10.16□□□□□ -0.78
USP28-201ENST00000003302 ANKDD1BA6NHY2 528 aa10.16□□□□□ -0.78
USP28-201ENST00000003302 H3BN98 237 aa10.16□□□□□ -0.78
USP28-201ENST00000003302 MMP20O60882 483 aa10.16□□□□□ -0.78
USP28-201ENST00000003302 POP4O95707 220 aaKnown RBP10.16□□□□□ -0.78
USP28-201ENST00000003302 CH25HO95992 272 aa10.16□□□□□ -0.78
USP28-201ENST00000003302 CLDN2P57739 230 aa10.16□□□□□ -0.78
USP28-201ENST00000003302 ATAD3CQ5T2N8 411 aa10.16□□□□□ -0.78
USP28-201ENST00000003302 ARMC5Q96C12 935 aa10.16□□□□□ -0.78
USP28-201ENST00000003302 SMAD5Q99717 465 aaKnown RBP10.16□□□□□ -0.78
USP28-201ENST00000003302 BTNL2Q9UIR0 455 aa10.16□□□□□ -0.78
USP28-201ENST00000003302 ATP11BQ9Y2G3 1177 aa10.16□□□□□ -0.78
USP28-201ENST00000003302 GPR55Q9Y2T6 319 aaPredicted RBP10.16□□□□□ -0.78
USP28-201ENST00000003302 PTPRSQ13332 1948 aa10.16□□□□□ -0.78
USP28-201ENST00000003302 A0A1W2PQ09 198 aa10.15□□□□□ -0.78
USP28-201ENST00000003302 A0A1W2PRB8 838 aa10.15□□□□□ -0.78
USP28-201ENST00000003302 CSF2RAP15509 400 aa10.15□□□□□ -0.78
USP28-201ENST00000003302 SLC15A1P46059 708 aa10.15□□□□□ -0.78
USP28-201ENST00000003302 AP1S2P56377 157 aa10.15□□□□□ -0.78
USP28-201ENST00000003302 DAB2P98082 770 aa10.15□□□□□ -0.78
USP28-201ENST00000003302 GCNT6Q5T4J0 391 aa10.15□□□□□ -0.78
USP28-201ENST00000003302 C22orf42Q6IC83 251 aa10.15□□□□□ -0.78
USP28-201ENST00000003302 C19orf48Q6RUI8 117 aa10.15□□□□□ -0.78
USP28-201ENST00000003302 ABCB9Q9NP78 766 aa10.15□□□□□ -0.78
USP28-201ENST00000003302 SIRT3Q9NTG7 399 aaPredicted RBP10.15□□□□□ -0.78
USP28-201ENST00000003302 HSPE1-MOB4S4R3N1 261 aa10.15□□□□□ -0.78
USP28-201ENST00000003302 ANHXE9PGG2 379 aa10.15□□□□□ -0.78
USP28-201ENST00000003302 LOC110117498-PIK3R3F6TDL0 507 aa10.15□□□□□ -0.78
USP28-201ENST00000003302 H7BY64 318 aa10.15□□□□□ -0.78
USP28-201ENST00000003302 RNASET2O00584 256 aaKnown RBP10.15□□□□□ -0.78
USP28-201ENST00000003302 LINC00271P0C7V0 271 aa10.15□□□□□ -0.78
USP28-201ENST00000003302 C8orf89P0DMQ9 161 aa10.15□□□□□ -0.78
USP28-201ENST00000003302 ELAVL4P26378 380 aaKnown RBP10.15□□□□□ -0.78
USP28-201ENST00000003302 IRS1P35568 1242 aa10.15□□□□□ -0.78
USP28-201ENST00000003302 GRK3P35626 688 aa10.15□□□□□ -0.78
USP28-201ENST00000003302 HTR3AP46098 478 aa10.15□□□□□ -0.78
USP28-201ENST00000003302 P2RY14Q15391 338 aa10.15□□□□□ -0.78
USP28-201ENST00000003302 OR52N2Q8NGI0 321 aa10.15□□□□□ -0.78
USP28-201ENST00000003302 MRPS31Q92665 395 aaKnown RBP10.15□□□□□ -0.78
USP28-201ENST00000003302 PPCDCQ96CD2 204 aa10.15□□□□□ -0.78
USP28-201ENST00000003302 TXNDC15Q96J42 360 aa10.15□□□□□ -0.78
USP28-201ENST00000003302 PRAP1Q96NZ9 151 aa10.15□□□□□ -0.78
USP28-201ENST00000003302 FCRL4Q96PJ5 515 aa10.15□□□□□ -0.78
USP28-201ENST00000003302 PIP5K1AQ99755 562 aa10.15□□□□□ -0.78
USP28-201ENST00000003302 XKR8Q9H6D3 395 aa10.15□□□□□ -0.78
USP28-201ENST00000003302 TVP23BQ9NYZ1 205 aa10.15□□□□□ -0.78
USP28-201ENST00000003302 WDR37Q9Y2I8 494 aa10.15□□□□□ -0.78
USP28-201ENST00000003302 ADAMDEC1O15204 470 aa10.15□□□□□ -0.78
USP28-201ENST00000003302 TLX2O43763 284 aaPredicted RBP10.15□□□□□ -0.78
USP28-201ENST00000003302 LILRB3O75022 631 aa10.15□□□□□ -0.78
USP28-201ENST00000003302 GUCY1B2O75343 617 aa10.15□□□□□ -0.78
USP28-201ENST00000003302 CSTF1Q05048 431 aaKnown RBP10.15□□□□□ -0.78
USP28-201ENST00000003302 ZNF91Q05481 1191 aa10.15□□□□□ -0.78
USP28-201ENST00000003302 REM2Q8IYK8 340 aaPredicted RBP10.15□□□□□ -0.78
USP28-201ENST00000003302 ST6GAL2Q96JF0 529 aa10.15□□□□□ -0.78
USP28-201ENST00000003302 COL21A1Q96P44 957 aa10.15□□□□□ -0.78
USP28-201ENST00000003302 MRPL9Q9BYD2 267 aaKnown RBP10.15□□□□□ -0.78
USP28-201ENST00000003302 NUAK2Q9H093 628 aa10.15□□□□□ -0.78
USP28-201ENST00000003302 HMX1Q9NP08 348 aaPredicted RBP10.15□□□□□ -0.78
USP28-201ENST00000003302 MAN2C1Q9NTJ4 1040 aa10.15□□□□□ -0.78
USP28-201ENST00000003302 TAS2R9Q9NYW1 312 aa10.15□□□□□ -0.78
USP28-201ENST00000003302 ARHGEF17Q96PE2 2063 aaPredicted RBP10.15□□□□□ -0.79
USP28-201ENST00000003302 ZC3H12DA2A288 527 aaKnown RBP10.15□□□□□ -0.79
USP28-201ENST00000003302 HMGN4O00479 90 aa10.15□□□□□ -0.79
USP28-201ENST00000003302 MPC1LP0DKB6 136 aa10.15□□□□□ -0.79
USP28-201ENST00000003302 MAPK1P28482 360 aa10.15□□□□□ -0.79
USP28-201ENST00000003302 SLC6A11P48066 632 aa10.15□□□□□ -0.79
USP28-201ENST00000003302 CRISP1P54107 249 aa10.15□□□□□ -0.79
USP28-201ENST00000003302 PRKAG1P54619 331 aa10.15□□□□□ -0.79
USP28-201ENST00000003302 FUT5Q11128 374 aa10.15□□□□□ -0.79
USP28-201ENST00000003302 SREBF2Q12772 1141 aa10.15□□□□□ -0.79
USP28-201ENST00000003302 CLEC12AQ5QGZ9 265 aa10.15□□□□□ -0.79
USP28-201ENST00000003302 MED27Q6P2C8 311 aa10.15□□□□□ -0.79
USP28-201ENST00000003302 ZER1Q7Z7L7 766 aa10.15□□□□□ -0.79
USP28-201ENST00000003302 ELMOD1Q8N336 334 aa10.15□□□□□ -0.79
USP28-201ENST00000003302 SLC25A19Q9HC21 320 aa10.15□□□□□ -0.79
USP28-201ENST00000003302 PLCXD1Q9NUJ7 323 aa10.15□□□□□ -0.79
USP28-201ENST00000003302 TMEM74BQ9NUR3 256 aa10.15□□□□□ -0.79
USP28-201ENST00000003302 DSPPQ9NZW4 1301 aa10.14□□□□□ -0.79
USP28-201ENST00000003302 CAPN5O15484 640 aaPredicted RBP10.14□□□□□ -0.79
USP28-201ENST00000003302 CCNKO75909 580 aa10.14□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 82 ms