RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 NT5DC2Q9H857 520 aa17.92■□□□□ 0.46
CLN3-262ENST00000637699 SPRR3Q9UBC9 169 aa17.92■□□□□ 0.46
CLN3-262ENST00000637699 CTNNAL1Q9UBT7 734 aa17.92■□□□□ 0.46
CLN3-262ENST00000637699 CHMP2BQ9UQN3 213 aa17.92■□□□□ 0.46
CLN3-262ENST00000637699 SEC23IPQ9Y6Y8 1000 aaKnown RBP17.92■□□□□ 0.46
CLN3-262ENST00000637699 FLNAP21333 2647 aaKnown RBP17.91■□□□□ 0.46
CLN3-262ENST00000637699 NCF1BA6NI72 391 aaPredicted RBP17.91■□□□□ 0.46
CLN3-262ENST00000637699 NCF1CA8MVU1 366 aaPredicted RBP17.91■□□□□ 0.46
CLN3-262ENST00000637699 FAM47E-STBD1D6RA91 191 aa17.91■□□□□ 0.46
CLN3-262ENST00000637699 HCN1O60741 890 aa17.91■□□□□ 0.46
CLN3-262ENST00000637699 ETHE1O95571 254 aa17.91■□□□□ 0.46
CLN3-262ENST00000637699 NCF1P14598 390 aaPredicted RBP17.91■□□□□ 0.46
CLN3-262ENST00000637699 ENDOUP21128 410 aaKnown RBP17.91■□□□□ 0.46
CLN3-262ENST00000637699 GSTM2P28161 218 aa17.91■□□□□ 0.46
CLN3-262ENST00000637699 HPDP32754 393 aaPredicted RBP17.91■□□□□ 0.46
CLN3-262ENST00000637699 ELK3P41970 407 aa17.91■□□□□ 0.46
CLN3-262ENST00000637699 SLC6A12P48065 614 aa17.91■□□□□ 0.46
CLN3-262ENST00000637699 FNTAP49354 379 aa17.91■□□□□ 0.46
CLN3-262ENST00000637699 ASPHQ12797 758 aa17.91■□□□□ 0.46
CLN3-262ENST00000637699 RIPPLY2Q5TAB7 128 aa17.91■□□□□ 0.46
CLN3-262ENST00000637699 CDC20BQ86Y33 519 aa17.91■□□□□ 0.46
CLN3-262ENST00000637699 GOT1L1Q8NHS2 421 aaPredicted RBP17.91■□□□□ 0.46
CLN3-262ENST00000637699 ANKRD49Q8WVL7 239 aa17.91■□□□□ 0.46
CLN3-262ENST00000637699 ANKRD7Q92527 254 aa17.91■□□□□ 0.46
CLN3-262ENST00000637699 JRKLQ9Y4A0 524 aa17.91■□□□□ 0.46
CLN3-262ENST00000637699 ABCA2Q9BZC7 2435 aa17.91■□□□□ 0.46
CLN3-262ENST00000637699 GABRA1P14867 456 aa17.9■□□□□ 0.46
CLN3-262ENST00000637699 DGKQP52824 942 aa17.9■□□□□ 0.46
CLN3-262ENST00000637699 SERTAD2Q14140 314 aa17.9■□□□□ 0.46
CLN3-262ENST00000637699 PIGGQ5H8A4 983 aa17.9■□□□□ 0.46
CLN3-262ENST00000637699 SLC22A10Q63ZE4 541 aa17.9■□□□□ 0.46
CLN3-262ENST00000637699 KIAA1191Q96A73 305 aa17.9■□□□□ 0.46
CLN3-262ENST00000637699 MAPKAP1Q9BPZ7 522 aa17.9■□□□□ 0.46
CLN3-262ENST00000637699 CAPS2Q9BXY5 557 aa17.9■□□□□ 0.46
CLN3-262ENST00000637699 KCNF1Q9H3M0 494 aa17.9■□□□□ 0.46
CLN3-262ENST00000637699 PRDM7Q9NQW5 492 aa17.9■□□□□ 0.46
CLN3-262ENST00000637699 B4GALT7Q9UBV7 327 aa17.9■□□□□ 0.46
CLN3-262ENST00000637699 COPS7AQ9UBW8 275 aa17.9■□□□□ 0.46
CLN3-262ENST00000637699 ZNF490Q9ULM2 529 aaPredicted RBP17.9■□□□□ 0.46
CLN3-262ENST00000637699 EDARQ9UNE0 448 aa17.9■□□□□ 0.46
CLN3-262ENST00000637699 PSAT1Q9Y617 370 aa17.9■□□□□ 0.46
CLN3-262ENST00000637699 VPS13CQ709C8 3753 aa17.89■□□□□ 0.45
CLN3-262ENST00000637699 DNHD1Q96M86 4753 aa17.89■□□□□ 0.45
CLN3-262ENST00000637699 FAM95CA0A1B0GW59 222 aa17.89■□□□□ 0.45
CLN3-262ENST00000637699 SYT5O00445 386 aa17.89■□□□□ 0.45
CLN3-262ENST00000637699 PRAMEF4O60810 478 aa17.89■□□□□ 0.45
CLN3-262ENST00000637699 RFPL3SP0C7P2 107 aa17.89■□□□□ 0.45
CLN3-262ENST00000637699 DRD2P14416 443 aa17.89■□□□□ 0.45
CLN3-262ENST00000637699 TAS2R39P59534 338 aa17.89■□□□□ 0.45
CLN3-262ENST00000637699 KCNJ2P63252 427 aa17.89■□□□□ 0.45
CLN3-262ENST00000637699 TGM3Q08188 693 aa17.89■□□□□ 0.45
CLN3-262ENST00000637699 FBXO48Q5FWF7 155 aa17.89■□□□□ 0.45
CLN3-262ENST00000637699 PRAMEF20Q5VT98 475 aa17.89■□□□□ 0.45
CLN3-262ENST00000637699 PRAMEF9Q5VWM5 478 aa17.89■□□□□ 0.45
CLN3-262ENST00000637699 ADAMTSL2Q86TH1 951 aa17.89■□□□□ 0.45
CLN3-262ENST00000637699 ZNF721Q8TF20 911 aa17.89■□□□□ 0.45
CLN3-262ENST00000637699 PITHD1Q9GZP4 211 aaPredicted RBP17.89■□□□□ 0.45
CLN3-262ENST00000637699 PRM3Q9NNZ6 103 aa17.89■□□□□ 0.45
CLN3-262ENST00000637699 DLL4Q9NR61 685 aa17.89■□□□□ 0.45
CLN3-262ENST00000637699 TRMT1Q9NXH9 659 aaKnown RBP17.89■□□□□ 0.45
CLN3-262ENST00000637699 GOLGA6L10A0A0M3HER8 536 aa17.88■□□□□ 0.45
CLN3-262ENST00000637699 A6NNC1 897 aa17.88■□□□□ 0.45
CLN3-262ENST00000637699 CLGNO14967 610 aa17.88■□□□□ 0.45
CLN3-262ENST00000637699 TAPBPO15533 448 aa17.88■□□□□ 0.45
CLN3-262ENST00000637699 FAM155BO75949 473 aa17.88■□□□□ 0.45
CLN3-262ENST00000637699 BMP5P22003 454 aa17.88■□□□□ 0.45
CLN3-262ENST00000637699 KCNC1P48547 511 aa17.88■□□□□ 0.45
CLN3-262ENST00000637699 TRPC1P48995 793 aa17.88■□□□□ 0.45
CLN3-262ENST00000637699 ADAM8P78325 824 aa17.88■□□□□ 0.45
CLN3-262ENST00000637699 DOC2AQ14183 400 aa17.88■□□□□ 0.45
CLN3-262ENST00000637699 MPEG1Q2M385 716 aa17.88■□□□□ 0.45
CLN3-262ENST00000637699 ZNF791Q3KP31 576 aaPredicted RBP17.88■□□□□ 0.45
CLN3-262ENST00000637699 SEM1Q6ZVN7 128 aa17.88■□□□□ 0.45
CLN3-262ENST00000637699 UBE3DQ7Z6J8 389 aa17.88■□□□□ 0.45
CLN3-262ENST00000637699 ZC3HC1Q86WB0 502 aaKnown RBP17.88■□□□□ 0.45
CLN3-262ENST00000637699 OR4N5Q8IXE1 308 aa17.88■□□□□ 0.45
CLN3-262ENST00000637699 ULK2Q8IYT8 1036 aa17.88■□□□□ 0.45
CLN3-262ENST00000637699 PDIK1LQ8N165 341 aa17.88■□□□□ 0.45
CLN3-262ENST00000637699 SLC35F6Q8N357 371 aa17.88■□□□□ 0.45
CLN3-262ENST00000637699 RELL2Q8NC24 303 aaPredicted RBP17.88■□□□□ 0.45
CLN3-262ENST00000637699 ESAMQ96AP7 390 aa17.88■□□□□ 0.45
CLN3-262ENST00000637699 ANKRD9Q96BM1 317 aaPredicted RBP17.88■□□□□ 0.45
CLN3-262ENST00000637699 CAPZA3Q96KX2 299 aa17.88■□□□□ 0.45
CLN3-262ENST00000637699 KCNC2Q96PR1 638 aa17.88■□□□□ 0.45
CLN3-262ENST00000637699 ALPK1Q96QP1 1244 aa17.88■□□□□ 0.45
CLN3-262ENST00000637699 WDR83Q9BRX9 315 aaKnown RBP17.88■□□□□ 0.45
CLN3-262ENST00000637699 SLC6A15Q9H2J7 730 aa17.88■□□□□ 0.45
CLN3-262ENST00000637699 ZNF703Q9H7S9 590 aaPredicted RBP17.88■□□□□ 0.45
CLN3-262ENST00000637699 LYRM4Q9HD34 91 aa17.88■□□□□ 0.45
CLN3-262ENST00000637699 DMRT3Q9NQL9 472 aa17.88■□□□□ 0.45
CLN3-262ENST00000637699 DNAJC11Q9NVH1 559 aa17.88■□□□□ 0.45
CLN3-262ENST00000637699 WWOXQ9NZC7 414 aa17.88■□□□□ 0.45
CLN3-262ENST00000637699 GPRC5BQ9NZH0 403 aa17.88■□□□□ 0.45
CLN3-262ENST00000637699 BOKQ9UMX3 212 aaPredicted RBP17.88■□□□□ 0.45
CLN3-262ENST00000637699 ARHGAP21Q5T5U3 1957 aa17.88■□□□□ 0.45
CLN3-262ENST00000637699 HSPB2A8KAH6 182 aa17.87■□□□□ 0.45
CLN3-262ENST00000637699 RTCAO00442 366 aaKnown RBP17.87■□□□□ 0.45
CLN3-262ENST00000637699 PEX19P40855 299 aa17.87■□□□□ 0.45
CLN3-262ENST00000637699 TGFBIQ15582 683 aa17.87■□□□□ 0.45
CLN3-262ENST00000637699 HSPB2Q16082 182 aa17.87■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms