RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 G3BP2Q9UN86 482 aaKnown RBP16.99■□□□□ 0.31
CLN3-239ENST00000628023 TRAF6Q9Y4K3 522 aa16.99■□□□□ 0.31
CLN3-239ENST00000628023 PTPN13Q12923 2485 aa16.98■□□□□ 0.31
CLN3-239ENST00000628023 SCN2AQ99250 2005 aa16.98■□□□□ 0.31
CLN3-239ENST00000628023 BLACEA4D250 179 aa16.98■□□□□ 0.31
CLN3-239ENST00000628023 SLC28A1O00337 649 aa16.98■□□□□ 0.31
CLN3-239ENST00000628023 CYR61O00622 381 aa16.98■□□□□ 0.31
CLN3-239ENST00000628023 RGS14O43566 566 aa16.98■□□□□ 0.31
CLN3-239ENST00000628023 ITM2AO43736 263 aa16.98■□□□□ 0.31
CLN3-239ENST00000628023 HPP00738 406 aa16.98■□□□□ 0.31
CLN3-239ENST00000628023 NR2F6P10588 404 aa16.98■□□□□ 0.31
CLN3-239ENST00000628023 COX6A1P12074 109 aa16.98■□□□□ 0.31
CLN3-239ENST00000628023 SLC1A6P48664 564 aa16.98■□□□□ 0.31
CLN3-239ENST00000628023 CCL11P51671 97 aa16.98■□□□□ 0.31
CLN3-239ENST00000628023 HNRNPFP52597 415 aaKnown RBP16.98■□□□□ 0.31
CLN3-239ENST00000628023 HSD17B7P56937 341 aa16.98■□□□□ 0.31
CLN3-239ENST00000628023 OR4D2P58180 307 aa16.98■□□□□ 0.31
CLN3-239ENST00000628023 TBL3Q12788 808 aaKnown RBP16.98■□□□□ 0.31
CLN3-239ENST00000628023 UBAP2LQ14157 1087 aaKnown RBP16.98■□□□□ 0.31
CLN3-239ENST00000628023 IGFBP7Q16270 282 aa16.98■□□□□ 0.31
CLN3-239ENST00000628023 IRAK1BP1Q5VVH5 260 aa16.98■□□□□ 0.31
CLN3-239ENST00000628023 NDUFAF7Q7L592 441 aa16.98■□□□□ 0.31
CLN3-239ENST00000628023 CPEB2Q7Z5Q1 589 aaKnown RBP16.98■□□□□ 0.31
CLN3-239ENST00000628023 APLFQ8IW19 511 aaPredicted RBP16.98■□□□□ 0.31
CLN3-239ENST00000628023 TRIM42Q8IWZ5 723 aa16.98■□□□□ 0.31
CLN3-239ENST00000628023 OR6Y1Q8NGX8 325 aa16.98■□□□□ 0.31
CLN3-239ENST00000628023 TWIST2Q8WVJ9 160 aa16.98■□□□□ 0.31
CLN3-239ENST00000628023 APIPQ96GX9 242 aa16.98■□□□□ 0.31
CLN3-239ENST00000628023 ZNF160Q9HCG1 818 aa16.98■□□□□ 0.31
CLN3-239ENST00000628023 ATP13A2Q9NQ11 1180 aa16.98■□□□□ 0.31
CLN3-239ENST00000628023 ZNF446Q9NWS9 450 aa16.98■□□□□ 0.31
CLN3-239ENST00000628023 BSNQ9UPA5 3926 aa16.98■□□□□ 0.31
CLN3-239ENST00000628023 LOC102723996A0A087X1L8 192 aa16.97■□□□□ 0.31
CLN3-239ENST00000628023 IGHV1-45A0A0A0MS14 117 aa16.97■□□□□ 0.31
CLN3-239ENST00000628023 IGHV3-20A0A0C4DH32 117 aa16.97■□□□□ 0.31
CLN3-239ENST00000628023 GNG14A0A1W2PPG7 69 aa16.97■□□□□ 0.31
CLN3-239ENST00000628023 SERTM1A2A2V5 107 aa16.97■□□□□ 0.31
CLN3-239ENST00000628023 A6NL46 340 aa16.97■□□□□ 0.31
CLN3-239ENST00000628023 MASP2O00187 686 aa16.97■□□□□ 0.31
CLN3-239ENST00000628023 PCDH7O60245 1069 aa16.97■□□□□ 0.31
CLN3-239ENST00000628023 GUCY1B2O75343 617 aa16.97■□□□□ 0.31
CLN3-239ENST00000628023 RSL1D1O76021 490 aaKnown RBP16.97■□□□□ 0.31
CLN3-239ENST00000628023 SEC24DO94855 1032 aaPredicted RBP16.97■□□□□ 0.31
CLN3-239ENST00000628023 SNUPNO95149 360 aaKnown RBP16.97■□□□□ 0.31
CLN3-239ENST00000628023 FGF4P08620 206 aa16.97■□□□□ 0.31
CLN3-239ENST00000628023 TPP2P29144 1249 aaPredicted RBP16.97■□□□□ 0.31
CLN3-239ENST00000628023 ARRB2P32121 409 aa16.97■□□□□ 0.31
CLN3-239ENST00000628023 BST1Q10588 318 aa16.97■□□□□ 0.31
CLN3-239ENST00000628023 STX4Q12846 297 aa16.97■□□□□ 0.31
CLN3-239ENST00000628023 AIMP2Q13155 320 aaKnown RBP16.97■□□□□ 0.31
CLN3-239ENST00000628023 NR6A1Q15406 480 aa16.97■□□□□ 0.31
CLN3-239ENST00000628023 SFT2D3Q587I9 215 aa16.97■□□□□ 0.31
CLN3-239ENST00000628023 ATG16L1Q676U5 607 aa16.97■□□□□ 0.31
CLN3-239ENST00000628023 C18orf63Q68DL7 685 aa16.97■□□□□ 0.31
CLN3-239ENST00000628023 TRIM46Q7Z4K8 759 aa16.97■□□□□ 0.31
CLN3-239ENST00000628023 ATCAYQ86WG3 371 aa16.97■□□□□ 0.31
CLN3-239ENST00000628023 TMEM52Q8NDY8 209 aa16.97■□□□□ 0.31
CLN3-239ENST00000628023 DYDC1Q8WWB3 177 aa16.97■□□□□ 0.31
CLN3-239ENST00000628023 TRIM55Q9BYV6 548 aa16.97■□□□□ 0.31
CLN3-239ENST00000628023 ZNF700Q9H0M5 742 aa16.97■□□□□ 0.31
CLN3-239ENST00000628023 RPF2Q9H7B2 306 aaKnown RBP16.97■□□□□ 0.31
CLN3-239ENST00000628023 NECTIN3Q9NQS3 549 aa16.97■□□□□ 0.31
CLN3-239ENST00000628023 ZDHHC2Q9UIJ5 367 aa16.97■□□□□ 0.31
CLN3-239ENST00000628023 ATG4BQ9Y4P1 393 aa16.97■□□□□ 0.31
CLN3-239ENST00000628023 ASB4Q9Y574 426 aa16.97■□□□□ 0.31
CLN3-239ENST00000628023 DNAJC15Q9Y5T4 150 aa16.97■□□□□ 0.31
CLN3-239ENST00000628023 PTGDR2Q9Y5Y4 395 aa16.97■□□□□ 0.31
CLN3-239ENST00000628023 NAV2Q8IVL1 2488 aa16.97■□□□□ 0.31
CLN3-239ENST00000628023 FLNCQ14315 2725 aa16.97■□□□□ 0.31
CLN3-239ENST00000628023 PIP5K1BO14986 540 aa16.96■□□□□ 0.31
CLN3-239ENST00000628023 SKAP2O75563 359 aaPredicted RBP16.96■□□□□ 0.31
CLN3-239ENST00000628023 PRKRAO75569 313 aaKnown RBP16.96■□□□□ 0.31
CLN3-239ENST00000628023 MYO1DO94832 1006 aa16.96■□□□□ 0.31
CLN3-239ENST00000628023 AIFM1O95831 613 aa16.96■□□□□ 0.31
CLN3-239ENST00000628023 LINC00032P0C843 101 aa16.96■□□□□ 0.31
CLN3-239ENST00000628023 ITGA3P26006 1051 aa16.96■□□□□ 0.31
CLN3-239ENST00000628023 PPP2R1BP30154 601 aa16.96■□□□□ 0.31
CLN3-239ENST00000628023 PCOLCEQ15113 449 aa16.96■□□□□ 0.31
CLN3-239ENST00000628023 CES4AQ5XG92 561 aa16.96■□□□□ 0.31
CLN3-239ENST00000628023 MRM1Q6IN84 353 aaKnown RBP16.96■□□□□ 0.31
CLN3-239ENST00000628023 SCUBE1Q8IWY4 988 aa16.96■□□□□ 0.31
CLN3-239ENST00000628023 PARP9Q8IXQ6 854 aa16.96■□□□□ 0.31
CLN3-239ENST00000628023 KIRREL3Q8IZU9 778 aa16.96■□□□□ 0.31
CLN3-239ENST00000628023 CHTF18Q8WVB6 975 aa16.96■□□□□ 0.31
CLN3-239ENST00000628023 LPAR4Q99677 370 aa16.96■□□□□ 0.31
CLN3-239ENST00000628023 TUBB6Q9BUF5 446 aa16.96■□□□□ 0.31
CLN3-239ENST00000628023 EBPLQ9BY08 206 aa16.96■□□□□ 0.31
CLN3-239ENST00000628023 ILKAPQ9H0C8 392 aaPredicted RBP16.96■□□□□ 0.31
CLN3-239ENST00000628023 ZNF395Q9H8N7 513 aaPredicted RBP16.96■□□□□ 0.31
CLN3-239ENST00000628023 MCM8Q9UJA3 840 aa16.96■□□□□ 0.31
CLN3-239ENST00000628023 RAP2CQ9Y3L5 183 aa16.96■□□□□ 0.31
CLN3-239ENST00000628023 DOPEY2Q9Y3R5 2298 aa16.95■□□□□ 0.3
CLN3-239ENST00000628023 PCSK5Q92824 1860 aa16.95■□□□□ 0.3
CLN3-239ENST00000628023 IGKV3D-11A0A0A0MRZ8 115 aa16.95■□□□□ 0.3
CLN3-239ENST00000628023 TCRBV16S1A1N1A0A5B0 115 aa16.95■□□□□ 0.3
CLN3-239ENST00000628023 SYNDIG1LA6NDD5 238 aa16.95■□□□□ 0.3
CLN3-239ENST00000628023 PROM1O43490 865 aa16.95■□□□□ 0.3
CLN3-239ENST00000628023 CTNSO60931 367 aa16.95■□□□□ 0.3
CLN3-239ENST00000628023 LDB3O75112 727 aa16.95■□□□□ 0.3
CLN3-239ENST00000628023 IFNA16P05015 189 aa16.95■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 55.3 ms