RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 ACSL1P33121 698 aa10.1□□□□□ -0.79
CUX1-221ENST00000622516 EIF2DP41214 584 aaKnown RBP10.1□□□□□ -0.79
CUX1-221ENST00000622516 DSTNP60981 165 aa10.1□□□□□ -0.79
CUX1-221ENST00000622516 EMX1Q04741 257 aaPredicted RBP10.1□□□□□ -0.79
CUX1-221ENST00000622516 EEF1A2Q05639 463 aaKnown RBP10.1□□□□□ -0.79
CUX1-221ENST00000622516 TMED1Q13445 227 aa10.1□□□□□ -0.79
CUX1-221ENST00000622516 ARHGAP19Q14CB8 494 aa10.1□□□□□ -0.79
CUX1-221ENST00000622516 ENPP7Q6UWV6 458 aa10.1□□□□□ -0.79
CUX1-221ENST00000622516 CCDC80Q76M96 950 aa10.1□□□□□ -0.79
CUX1-221ENST00000622516 ZNF540Q8NDQ6 660 aa10.1□□□□□ -0.79
CUX1-221ENST00000622516 MRPL38Q96DV4 380 aaKnown RBP10.1□□□□□ -0.79
CUX1-221ENST00000622516 CLDND1Q9NY35 253 aa10.1□□□□□ -0.79
CUX1-221ENST00000622516 TBC1D29Q9UFV1 150 aa10.1□□□□□ -0.79
CUX1-221ENST00000622516 MSRAQ9UJ68 235 aa10.1□□□□□ -0.79
CUX1-221ENST00000622516 FBXW2Q9UKT8 454 aa10.1□□□□□ -0.79
CUX1-221ENST00000622516 ICKQ9UPZ9 632 aa10.1□□□□□ -0.79
CUX1-221ENST00000622516 PCDHGB3Q9Y5G1 929 aa10.1□□□□□ -0.79
CUX1-221ENST00000622516 WDFY4Q6ZS81 3184 aa10.09□□□□□ -0.79
CUX1-221ENST00000622516 TRBC2A0A5B9 178 aa10.09□□□□□ -0.79
CUX1-221ENST00000622516 PGRMC2O15173 223 aa10.09□□□□□ -0.79
CUX1-221ENST00000622516 PDPK1O15530 556 aa10.09□□□□□ -0.79
CUX1-221ENST00000622516 ERI3O43414 337 aaKnown RBP10.09□□□□□ -0.79
CUX1-221ENST00000622516 UGT2B11O75310 529 aa10.09□□□□□ -0.79
CUX1-221ENST00000622516 JRKO75564 520 aa10.09□□□□□ -0.79
CUX1-221ENST00000622516 CXCR2P25025 360 aa10.09□□□□□ -0.79
CUX1-221ENST00000622516 ALDH4A1P30038 563 aa10.09□□□□□ -0.79
CUX1-221ENST00000622516 IDH2P48735 452 aaKnown RBP10.09□□□□□ -0.79
CUX1-221ENST00000622516 ENTPD1P49961 510 aa10.09□□□□□ -0.79
CUX1-221ENST00000622516 REEP5Q00765 189 aa10.09□□□□□ -0.79
CUX1-221ENST00000622516 HEPACAMQ14CZ8 416 aa10.09□□□□□ -0.79
CUX1-221ENST00000622516 NPTX1Q15818 432 aa10.09□□□□□ -0.79
CUX1-221ENST00000622516 RFX4Q33E94 735 aa10.09□□□□□ -0.79
CUX1-221ENST00000622516 IFI44LQ53G44 452 aa10.09□□□□□ -0.79
CUX1-221ENST00000622516 KIAA1614Q5VZ46 1190 aa10.09□□□□□ -0.79
CUX1-221ENST00000622516 MAMSTRQ6ZN01 415 aa10.09□□□□□ -0.79
CUX1-221ENST00000622516 PIWIL3Q7Z3Z3 882 aaKnown RBP10.09□□□□□ -0.79
CUX1-221ENST00000622516 C6orf120Q7Z4R8 191 aa10.09□□□□□ -0.79
CUX1-221ENST00000622516 NUDT13Q86X67 352 aa10.09□□□□□ -0.79
CUX1-221ENST00000622516 RBM45Q8IUH3 476 aaKnown RBP10.09□□□□□ -0.79
CUX1-221ENST00000622516 RGMAQ96B86 450 aa10.09□□□□□ -0.79
CUX1-221ENST00000622516 MRPS30Q9NP92 439 aaKnown RBP10.09□□□□□ -0.79
CUX1-221ENST00000622516 MAPRE3Q9UPY8 281 aa10.09□□□□□ -0.79
CUX1-221ENST00000622516 PADI2Q9Y2J8 665 aa10.09□□□□□ -0.79
CUX1-221ENST00000622516 SNX5Q9Y5X3 404 aa10.09□□□□□ -0.79
CUX1-221ENST00000622516 TDRD6O60522 2096 aaKnown RBP10.09□□□□□ -0.79
CUX1-221ENST00000622516 LRIT2A6NDA9 550 aa10.09□□□□□ -0.79
CUX1-221ENST00000622516 ISM1B1AKI9 464 aa10.09□□□□□ -0.79
CUX1-221ENST00000622516 PLRG1O43660 514 aaKnown RBP10.09□□□□□ -0.79
CUX1-221ENST00000622516 FADS2O95864 444 aaKnown RBP10.09□□□□□ -0.79
CUX1-221ENST00000622516 ITGAMP11215 1152 aa10.09□□□□□ -0.79
CUX1-221ENST00000622516 RYKP34925 604 aa10.09□□□□□ -0.79
CUX1-221ENST00000622516 C10orf62Q5T681 223 aaPredicted RBP10.09□□□□□ -0.79
CUX1-221ENST00000622516 NDUFAF5Q5TEU4 345 aa10.09□□□□□ -0.79
CUX1-221ENST00000622516 TMEM236Q5W0B7 351 aa10.09□□□□□ -0.79
CUX1-221ENST00000622516 OR4C11Q6IEV9 310 aa10.09□□□□□ -0.79
CUX1-221ENST00000622516 KIAA1324Q6UXG2 1013 aaKnown RBP10.09□□□□□ -0.79
CUX1-221ENST00000622516 SFTPA2Q8IWL1 248 aa10.09□□□□□ -0.79
CUX1-221ENST00000622516 SHISA5Q8N114 240 aa10.09□□□□□ -0.79
CUX1-221ENST00000622516 OR10G2Q8NGC3 310 aa10.09□□□□□ -0.79
CUX1-221ENST00000622516 VANGL1Q8TAA9 524 aaPredicted RBP10.09□□□□□ -0.79
CUX1-221ENST00000622516 UTP15Q8TED0 518 aaKnown RBP10.09□□□□□ -0.79
CUX1-221ENST00000622516 CREB3L4Q8TEY5 395 aa10.09□□□□□ -0.79
CUX1-221ENST00000622516 GAB3Q8WWW8 586 aa10.09□□□□□ -0.79
CUX1-221ENST00000622516 THAP11Q96EK4 314 aa10.09□□□□□ -0.79
CUX1-221ENST00000622516 ZNF300Q96RE9 604 aaPredicted RBP10.09□□□□□ -0.79
CUX1-221ENST00000622516 FUNDC2Q9BWH2 189 aa10.09□□□□□ -0.79
CUX1-221ENST00000622516 GABARAPL1Q9H0R8 117 aa10.09□□□□□ -0.79
CUX1-221ENST00000622516 PELI2Q9HAT8 420 aa10.09□□□□□ -0.79
CUX1-221ENST00000622516 SLC6A20Q9NP91 592 aa10.09□□□□□ -0.79
CUX1-221ENST00000622516 NDRG4Q9ULP0 352 aaKnown RBP10.09□□□□□ -0.79
CUX1-221ENST00000622516 DMDP11532 3685 aa10.09□□□□□ -0.79
CUX1-221ENST00000622516 TPST2O60704 377 aa10.08□□□□□ -0.8
CUX1-221ENST00000622516 SEC14L2O76054 403 aa10.08□□□□□ -0.8
CUX1-221ENST00000622516 KRT75O95678 551 aa10.08□□□□□ -0.8
CUX1-221ENST00000622516 UQCRC2P22695 453 aa10.08□□□□□ -0.8
CUX1-221ENST00000622516 GSTM2P28161 218 aa10.08□□□□□ -0.8
CUX1-221ENST00000622516 HTR1BP28222 390 aa10.08□□□□□ -0.8
CUX1-221ENST00000622516 PEBP1P30086 187 aaKnown RBP10.08□□□□□ -0.8
CUX1-221ENST00000622516 CD6P30203 668 aa10.08□□□□□ -0.8
CUX1-221ENST00000622516 GPC1P35052 558 aa10.08□□□□□ -0.8
CUX1-221ENST00000622516 RPL3P39023 403 aaKnown RBP10.08□□□□□ -0.8
CUX1-221ENST00000622516 NUDT6P53370 316 aa10.08□□□□□ -0.8
CUX1-221ENST00000622516 MVKQ03426 396 aa10.08□□□□□ -0.8
CUX1-221ENST00000622516 OCA2Q04671 838 aa10.08□□□□□ -0.8
CUX1-221ENST00000622516 SLAMF1Q13291 335 aa10.08□□□□□ -0.8
CUX1-221ENST00000622516 LRRC32Q14392 662 aa10.08□□□□□ -0.8
CUX1-221ENST00000622516 PUM1Q14671 1186 aaKnown RBP eCLIP10.08□□□□□ -0.85e-7■■■□□ 14.6
CUX1-221ENST00000622516 RPE65Q16518 533 aa10.08□□□□□ -0.8
CUX1-221ENST00000622516 SDE2Q6IQ49 451 aa10.08□□□□□ -0.8
CUX1-221ENST00000622516 AHSA2Q719I0 299 aa10.08□□□□□ -0.8
CUX1-221ENST00000622516 PAGE2Q7Z2X7 111 aa10.08□□□□□ -0.8
CUX1-221ENST00000622516 LGI4Q8N135 537 aa10.08□□□□□ -0.8
CUX1-221ENST00000622516 GIPC3Q8TF64 312 aa10.08□□□□□ -0.8
CUX1-221ENST00000622516 XAGE5Q8WWM1 108 aa10.08□□□□□ -0.8
CUX1-221ENST00000622516 LZICQ8WZA0 190 aa10.08□□□□□ -0.8
CUX1-221ENST00000622516 SIPA1Q96FS4 1042 aa10.08□□□□□ -0.8
CUX1-221ENST00000622516 TMEM19Q96HH6 336 aa10.08□□□□□ -0.8
CUX1-221ENST00000622516 S1PR5Q9H228 398 aa10.08□□□□□ -0.8
CUX1-221ENST00000622516 RAD21L1Q9H4I0 556 aa10.08□□□□□ -0.8
CUX1-221ENST00000622516 ARMC7Q9H6L4 198 aa10.08□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 205.1 ms