RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 A0A087WV48 116 aa18.54■□□□□ 0.56
UPF3A-211ENST00000618700 EFSO43281 561 aa18.54■□□□□ 0.56
UPF3A-211ENST00000618700 B4GALT2O60909 372 aa18.54■□□□□ 0.56
UPF3A-211ENST00000618700 GUCY1B2O75343 617 aa18.54■□□□□ 0.56
UPF3A-211ENST00000618700 PRKRAO75569 313 aaKnown RBP18.54■□□□□ 0.56
UPF3A-211ENST00000618700 BCKDHAP12694 445 aa18.54■□□□□ 0.56
UPF3A-211ENST00000618700 TACR1P25103 407 aa18.54■□□□□ 0.56
UPF3A-211ENST00000618700 ERVK-8P63133 956 aa18.54■□□□□ 0.56
UPF3A-211ENST00000618700 TLE3Q04726 772 aa18.54■□□□□ 0.56
UPF3A-211ENST00000618700 EMX2Q04743 252 aa18.54■□□□□ 0.56
UPF3A-211ENST00000618700 IL10RAQ13651 578 aa18.54■□□□□ 0.56
UPF3A-211ENST00000618700 MINDY4Q4G0A6 757 aa18.54■□□□□ 0.56
UPF3A-211ENST00000618700 PRDM9Q9NQV7 894 aa18.54■□□□□ 0.56
UPF3A-211ENST00000618700 USP24Q9UPU5 2620 aa18.54■□□□□ 0.56
UPF3A-211ENST00000618700 CCDC88CQ9P219 2028 aa18.54■□□□□ 0.56
UPF3A-211ENST00000618700 URB1O60287 2271 aaKnown RBP18.53■□□□□ 0.56
UPF3A-211ENST00000618700 IGKV3D-11A0A0A0MRZ8 115 aa18.53■□□□□ 0.56
UPF3A-211ENST00000618700 GOLGA8QA0A0J9YX86 632 aa18.53■□□□□ 0.56
UPF3A-211ENST00000618700 GOLGA8OA6NCC3 632 aa18.53■□□□□ 0.56
UPF3A-211ENST00000618700 OR2W5A6NFC9 320 aa18.53■□□□□ 0.56
UPF3A-211ENST00000618700 GOLGA8NF8WBI6 632 aa18.53■□□□□ 0.56
UPF3A-211ENST00000618700 POLR3GO15318 223 aaPredicted RBP18.53■□□□□ 0.56
UPF3A-211ENST00000618700 CREG1O75629 220 aa18.53■□□□□ 0.56
UPF3A-211ENST00000618700 IL3P08700 152 aa18.53■□□□□ 0.56
UPF3A-211ENST00000618700 LBPP18428 481 aa18.53■□□□□ 0.56
UPF3A-211ENST00000618700 MAPK1P28482 360 aa18.53■□□□□ 0.56
UPF3A-211ENST00000618700 LSP1P33241 339 aa18.53■□□□□ 0.56
UPF3A-211ENST00000618700 IDH3AP50213 366 aa18.53■□□□□ 0.56
UPF3A-211ENST00000618700 EMP2P54851 167 aa18.53■□□□□ 0.56
UPF3A-211ENST00000618700 AQP5P55064 265 aa18.53■□□□□ 0.56
UPF3A-211ENST00000618700 HSD17B7P56937 341 aa18.53■□□□□ 0.56
UPF3A-211ENST00000618700 TAS2R50P59544 299 aa18.53■□□□□ 0.56
UPF3A-211ENST00000618700 MAD2L1Q13257 205 aaPredicted RBP18.53■□□□□ 0.56
UPF3A-211ENST00000618700 IKBIPQ70UQ0 350 aa18.53■□□□□ 0.56
UPF3A-211ENST00000618700 CLNKQ7Z7G1 428 aa18.53■□□□□ 0.56
UPF3A-211ENST00000618700 MMP21Q8N119 569 aa18.53■□□□□ 0.56
UPF3A-211ENST00000618700 OR52B2Q96RD2 323 aa18.53■□□□□ 0.56
UPF3A-211ENST00000618700 SIKE1Q9BRV8 207 aa18.53■□□□□ 0.56
UPF3A-211ENST00000618700 C1orf50Q9BV19 199 aa18.53■□□□□ 0.56
UPF3A-211ENST00000618700 NPHS2Q9NP85 383 aa18.53■□□□□ 0.56
UPF3A-211ENST00000618700 SEMA3GQ9NS98 782 aa18.53■□□□□ 0.56
UPF3A-211ENST00000618700 PCDHA9Q9Y5H5 950 aa18.53■□□□□ 0.56
UPF3A-211ENST00000618700 CLDN16Q9Y5I7 305 aa18.53■□□□□ 0.56
UPF3A-211ENST00000618700 CFAP47Q6ZTR5 3102 aa18.52■□□□□ 0.56
UPF3A-211ENST00000618700 DIAPH2O60879 1101 aa18.52■□□□□ 0.56
UPF3A-211ENST00000618700 HEXBP07686 556 aa18.52■□□□□ 0.56
UPF3A-211ENST00000618700 PRPS2P11908 318 aa18.52■□□□□ 0.56
UPF3A-211ENST00000618700 MMP11P24347 488 aa18.52■□□□□ 0.56
UPF3A-211ENST00000618700 TLX1P31314 330 aaPredicted RBP18.52■□□□□ 0.56
UPF3A-211ENST00000618700 BTG2P78543 158 aa18.52■□□□□ 0.56
UPF3A-211ENST00000618700 SSPNQ14714 243 aa18.52■□□□□ 0.56
UPF3A-211ENST00000618700 CRTC2Q53ET0 693 aaPredicted RBP18.52■□□□□ 0.56
UPF3A-211ENST00000618700 MFSD4BQ5TF39 518 aa18.52■□□□□ 0.56
UPF3A-211ENST00000618700 OR52E8Q6IFG1 317 aa18.52■□□□□ 0.56
UPF3A-211ENST00000618700 FAM71E1Q6IPT2 247 aa18.52■□□□□ 0.56
UPF3A-211ENST00000618700 TMEM205Q6UW68 189 aa18.52■□□□□ 0.56
UPF3A-211ENST00000618700 RIPOR1Q6ZS17 1223 aa18.52■□□□□ 0.56
UPF3A-211ENST00000618700 PARP9Q8IXQ6 854 aa18.52■□□□□ 0.56
UPF3A-211ENST00000618700 PLPP5Q8NEB5 264 aa18.52■□□□□ 0.56
UPF3A-211ENST00000618700 RFWD2Q8NHY2 731 aa18.52■□□□□ 0.56
UPF3A-211ENST00000618700 DNAJB14Q8TBM8 379 aa18.52■□□□□ 0.56
UPF3A-211ENST00000618700 ADAMTS17Q8TE56 1095 aa18.52■□□□□ 0.56
UPF3A-211ENST00000618700 TSLPQ969D9 159 aa18.52■□□□□ 0.56
UPF3A-211ENST00000618700 UCN3Q969E3 161 aa18.52■□□□□ 0.56
UPF3A-211ENST00000618700 NACC2Q96BF6 587 aa18.52■□□□□ 0.56
UPF3A-211ENST00000618700 CHMP6Q96FZ7 201 aa18.52■□□□□ 0.56
UPF3A-211ENST00000618700 EBF4Q9BQW3 602 aa18.52■□□□□ 0.56
UPF3A-211ENST00000618700 FAIM2Q9BWQ8 316 aa18.52■□□□□ 0.56
UPF3A-211ENST00000618700 TRIM55Q9BYV6 548 aa18.52■□□□□ 0.56
UPF3A-211ENST00000618700 RPF2Q9H7B2 306 aaKnown RBP18.52■□□□□ 0.56
UPF3A-211ENST00000618700 WDR41Q9HAD4 459 aa18.52■□□□□ 0.56
UPF3A-211ENST00000618700 PRTFDC1Q9NRG1 225 aa18.52■□□□□ 0.56
UPF3A-211ENST00000618700 NOP53Q9NZM5 478 aaKnown RBP18.52■□□□□ 0.56
UPF3A-211ENST00000618700 WBP11Q9Y2W2 641 aaKnown RBP18.52■□□□□ 0.56
UPF3A-211ENST00000618700 C1orf226A1L170 272 aa18.51■□□□□ 0.55
UPF3A-211ENST00000618700 ZNF891A8MT65 544 aaPredicted RBP18.51■□□□□ 0.55
UPF3A-211ENST00000618700 C3orf80F5H4A9 247 aa18.51■□□□□ 0.55
UPF3A-211ENST00000618700 TGFBR3LH3BV60 316 aa18.51■□□□□ 0.55
UPF3A-211ENST00000618700 CLDN4O14493 209 aa18.51■□□□□ 0.55
UPF3A-211ENST00000618700 PCDH17O14917 1159 aa18.51■□□□□ 0.55
UPF3A-211ENST00000618700 PGRMC2O15173 223 aa18.51■□□□□ 0.55
UPF3A-211ENST00000618700 FGF17O60258 216 aa18.51■□□□□ 0.55
UPF3A-211ENST00000618700 PRMT3O60678 531 aa18.51■□□□□ 0.55
UPF3A-211ENST00000618700 CTNSO60931 367 aa18.51■□□□□ 0.55
UPF3A-211ENST00000618700 ALOX12BO75342 701 aa18.51■□□□□ 0.55
UPF3A-211ENST00000618700 IGHEP01854 428 aa18.51■□□□□ 0.55
UPF3A-211ENST00000618700 ALDOCP09972 364 aaKnown RBP18.51■□□□□ 0.55
UPF3A-211ENST00000618700 TROVE2P10155 538 aaKnown RBP eCLIP18.51■□□□□ 0.55
UPF3A-211ENST00000618700 DRD2P14416 443 aa18.51■□□□□ 0.55
UPF3A-211ENST00000618700 MAOAP21397 527 aa18.51■□□□□ 0.55
UPF3A-211ENST00000618700 HEPACAMQ14CZ8 416 aa18.51■□□□□ 0.55
UPF3A-211ENST00000618700 UGT8Q16880 541 aa18.51■□□□□ 0.55
UPF3A-211ENST00000618700 IL23RQ5VWK5 629 aa18.51■□□□□ 0.55
UPF3A-211ENST00000618700 SLC48A1Q6P1K1 146 aa18.51■□□□□ 0.55
UPF3A-211ENST00000618700 LRRC69Q6ZNQ3 347 aa18.51■□□□□ 0.55
UPF3A-211ENST00000618700 PPP1R32Q7Z5V6 425 aa18.51■□□□□ 0.55
UPF3A-211ENST00000618700 TMEM132CQ8N3T6 1108 aa18.51■□□□□ 0.55
UPF3A-211ENST00000618700 LIX1Q8N485 282 aa18.51■□□□□ 0.55
UPF3A-211ENST00000618700 TANKQ92844 425 aa18.51■□□□□ 0.55
UPF3A-211ENST00000618700 ANKRD9Q96BM1 317 aaPredicted RBP18.51■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms