RNA–Protein interactions for RNA: ENST00000613099.4

VPS13D-213, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS13D, Length 16,245 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-213ENST00000613099 CACFD1Q9UGQ2 172 aa4.77□□□□□ -1.65
VPS13D-213ENST00000613099 TRAPPC4Q9Y296 219 aa4.77□□□□□ -1.65
VPS13D-213ENST00000613099 COQ4Q9Y3A0 265 aa4.77□□□□□ -1.65
VPS13D-213ENST00000613099 ARID2Q68CP9 1835 aa4.77□□□□□ -1.65
VPS13D-213ENST00000613099 ANXA2P2A6NMY6 339 aa4.77□□□□□ -1.65
VPS13D-213ENST00000613099 ANXA2P07355 339 aaKnown RBP4.77□□□□□ -1.65
VPS13D-213ENST00000613099 IGFALSP35858 605 aa4.77□□□□□ -1.65
VPS13D-213ENST00000613099 MAN2A2P49641 1150 aa4.77□□□□□ -1.65
VPS13D-213ENST00000613099 CCR9P51686 369 aa4.77□□□□□ -1.65
VPS13D-213ENST00000613099 PYROXD2Q8N2H3 581 aa4.77□□□□□ -1.65
VPS13D-213ENST00000613099 SLC44A3Q8N4M1 653 aa4.77□□□□□ -1.65
VPS13D-213ENST00000613099 ZNF606Q8WXB4 792 aa4.77□□□□□ -1.65
VPS13D-213ENST00000613099 SMARCD2Q92925 531 aa4.77□□□□□ -1.65
VPS13D-213ENST00000613099 P2RY13Q9BPV8 354 aa4.77□□□□□ -1.65
VPS13D-213ENST00000613099 PINK1Q9BXM7 581 aa4.77□□□□□ -1.65
VPS13D-213ENST00000613099 ARHGAP39Q9C0H5 1083 aa4.77□□□□□ -1.65
VPS13D-213ENST00000613099 ZNF282Q9UDV7 671 aaPredicted RBP4.77□□□□□ -1.65
VPS13D-213ENST00000613099 GTF2A1LQ9UNN4 478 aa4.77□□□□□ -1.65
VPS13D-213ENST00000613099 PCDHGA6Q9Y5G7 932 aa4.77□□□□□ -1.65
VPS13D-213ENST00000613099 BTAF1O14981 1849 aa4.77□□□□□ -1.65
VPS13D-213ENST00000613099 CETPP11597 493 aa4.77□□□□□ -1.65
VPS13D-213ENST00000613099 RBMS1P29558 406 aaKnown RBP4.77□□□□□ -1.65
VPS13D-213ENST00000613099 SPCS3P61009 180 aa4.77□□□□□ -1.65
VPS13D-213ENST00000613099 OGDHQ02218 1023 aa4.77□□□□□ -1.65
VPS13D-213ENST00000613099 SRSF11Q05519 484 aaKnown RBP4.77□□□□□ -1.65
VPS13D-213ENST00000613099 ACSM2AQ08AH3 577 aa4.77□□□□□ -1.65
VPS13D-213ENST00000613099 RTP2Q5QGT7 225 aa4.77□□□□□ -1.65
VPS13D-213ENST00000613099 ACSM2BQ68CK6 577 aa4.77□□□□□ -1.65
VPS13D-213ENST00000613099 TMUB2Q71RG4 321 aa4.77□□□□□ -1.65
VPS13D-213ENST00000613099 VTCN1Q7Z7D3 282 aa4.77□□□□□ -1.65
VPS13D-213ENST00000613099 PLPP5Q8NEB5 264 aa4.77□□□□□ -1.65
VPS13D-213ENST00000613099 DNERQ8NFT8 737 aa4.77□□□□□ -1.65
VPS13D-213ENST00000613099 CSGALNACT1Q8TDX6 532 aa4.77□□□□□ -1.65
VPS13D-213ENST00000613099 ADIPOR1Q96A54 375 aa4.77□□□□□ -1.65
VPS13D-213ENST00000613099 CMTM3Q96MX0 182 aa4.77□□□□□ -1.65
VPS13D-213ENST00000613099 CNTNAP3Q9BZ76 1288 aa4.77□□□□□ -1.65
VPS13D-213ENST00000613099 POLMQ9NP87 494 aaPredicted RBP4.77□□□□□ -1.65
VPS13D-213ENST00000613099 FAM96BQ9Y3D0 163 aa4.77□□□□□ -1.65
VPS13D-213ENST00000613099 IGSF9BQ9UPX0 1349 aa4.77□□□□□ -1.65
VPS13D-213ENST00000613099 GPLD1P80108 840 aa4.77□□□□□ -1.65
VPS13D-213ENST00000613099 ADPRMQ3LIE5 342 aa4.77□□□□□ -1.65
VPS13D-213ENST00000613099 LIPKQ5VXJ0 399 aa4.77□□□□□ -1.65
VPS13D-213ENST00000613099 SNX29P2Q8IUI4 249 aa4.77□□□□□ -1.65
VPS13D-213ENST00000613099 SNX33Q8WV41 574 aa4.77□□□□□ -1.65
VPS13D-213ENST00000613099 HPDLQ96IR7 371 aa4.77□□□□□ -1.65
VPS13D-213ENST00000613099 OMDQ99983 421 aa4.77□□□□□ -1.65
VPS13D-213ENST00000613099 IL17RBQ9NRM6 502 aa4.77□□□□□ -1.65
VPS13D-213ENST00000613099 RBM7Q9Y580 266 aaKnown RBP4.77□□□□□ -1.65
VPS13D-213ENST00000613099 DMRT1Q9Y5R6 373 aa4.77□□□□□ -1.65
VPS13D-213ENST00000613099 PLXNA1Q9UIW2 1896 aa4.77□□□□□ -1.65
VPS13D-213ENST00000613099 SEC14L6B5MCN3 397 aa4.77□□□□□ -1.65
VPS13D-213ENST00000613099 IFNA1P01562 189 aa4.77□□□□□ -1.65
VPS13D-213ENST00000613099 UGT2B7P16662 529 aa4.77□□□□□ -1.65
VPS13D-213ENST00000613099 GIFP27352 417 aa4.77□□□□□ -1.65
VPS13D-213ENST00000613099 CDH5P33151 784 aaPredicted RBP4.77□□□□□ -1.65
VPS13D-213ENST00000613099 CDH8P55286 799 aa4.77□□□□□ -1.65
VPS13D-213ENST00000613099 SEC61A1P61619 476 aaKnown RBP4.77□□□□□ -1.65
VPS13D-213ENST00000613099 ZNF91Q05481 1191 aa4.77□□□□□ -1.65
VPS13D-213ENST00000613099 GTDC1Q4AE62 458 aa4.77□□□□□ -1.65
VPS13D-213ENST00000613099 KLHDC8BQ8IXV7 354 aa4.77□□□□□ -1.65
VPS13D-213ENST00000613099 OR56B1Q8NGI3 324 aa4.77□□□□□ -1.65
VPS13D-213ENST00000613099 FRS2Q8WU20 508 aa4.77□□□□□ -1.65
VPS13D-213ENST00000613099 RNF141Q8WVD5 230 aa4.77□□□□□ -1.65
VPS13D-213ENST00000613099 TWIST2Q8WVJ9 160 aa4.77□□□□□ -1.65
VPS13D-213ENST00000613099 RAB39BQ96DA2 213 aa4.77□□□□□ -1.65
VPS13D-213ENST00000613099 DOCK1Q14185 1865 aa4.77□□□□□ -1.65
VPS13D-213ENST00000613099 BRWD1Q9NSI6 2320 aa4.77□□□□□ -1.65
VPS13D-213ENST00000613099 SCN2BO60939 215 aa4.77□□□□□ -1.65
VPS13D-213ENST00000613099 HRGP04196 525 aa4.77□□□□□ -1.65
VPS13D-213ENST00000613099 CLCNKBP51801 687 aa4.77□□□□□ -1.65
VPS13D-213ENST00000613099 CDK3Q00526 305 aa4.77□□□□□ -1.65
VPS13D-213ENST00000613099 VAMP3Q15836 100 aa4.77□□□□□ -1.65
VPS13D-213ENST00000613099 ZNF311Q5JNZ3 666 aa4.77□□□□□ -1.65
VPS13D-213ENST00000613099 CGB2Q6NT52 195 aa4.77□□□□□ -1.65
VPS13D-213ENST00000613099 DCXRQ7Z4W1 244 aa4.77□□□□□ -1.65
VPS13D-213ENST00000613099 CMC1Q7Z7K0 106 aa4.77□□□□□ -1.65
VPS13D-213ENST00000613099 OR6V1Q8N148 313 aa4.77□□□□□ -1.65
VPS13D-213ENST00000613099 CNOT2Q9NZN8 540 aaKnown RBP4.77□□□□□ -1.65
VPS13D-213ENST00000613099 WASF3Q9UPY6 502 aa4.77□□□□□ -1.65
VPS13D-213ENST00000613099 SLIT2O94813 1529 aa4.77□□□□□ -1.65
VPS13D-213ENST00000613099 CNTNAP5Q8WYK1 1306 aa4.76□□□□□ -1.65
VPS13D-213ENST00000613099 CBR1P16152 277 aa4.76□□□□□ -1.65
VPS13D-213ENST00000613099 S100A11P31949 105 aa4.76□□□□□ -1.65
VPS13D-213ENST00000613099 NPRL3Q12980 569 aa4.76□□□□□ -1.65
VPS13D-213ENST00000613099 MAJINQ3KP22 176 aa4.76□□□□□ -1.65
VPS13D-213ENST00000613099 SLC27A4Q6P1M0 643 aa4.76□□□□□ -1.65
VPS13D-213ENST00000613099 OR52J3Q8NH60 311 aa4.76□□□□□ -1.65
VPS13D-213ENST00000613099 KCNC2Q96PR1 638 aa4.76□□□□□ -1.65
VPS13D-213ENST00000613099 NDC1Q9BTX1 674 aa4.76□□□□□ -1.65
VPS13D-213ENST00000613099 TREM2Q9NZC2 230 aa4.76□□□□□ -1.65
VPS13D-213ENST00000613099 CTSFQ9UBX1 484 aa4.76□□□□□ -1.65
VPS13D-213ENST00000613099 ANKUB1A6NFN9 424 aa4.76□□□□□ -1.65
VPS13D-213ENST00000613099 GPR89AB7ZAQ6 455 aa4.76□□□□□ -1.65
VPS13D-213ENST00000613099 GPR89BP0CG08 455 aa4.76□□□□□ -1.65
VPS13D-213ENST00000613099 ARNTP27540 789 aa4.76□□□□□ -1.65
VPS13D-213ENST00000613099 SMSP52788 366 aa4.76□□□□□ -1.65
VPS13D-213ENST00000613099 TEX44Q53QW1 395 aa4.76□□□□□ -1.65
VPS13D-213ENST00000613099 RNASE12Q5GAN4 147 aaKnown RBP4.76□□□□□ -1.65
VPS13D-213ENST00000613099 TAPT1Q6NXT6 567 aa4.76□□□□□ -1.65
VPS13D-213ENST00000613099 WRAP53Q9BUR4 548 aaKnown RBP4.76□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms