RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 BTKQ06187 659 aa15.52■□□□□ 0.07
CCDC28A-202ENST00000611852 BST1Q10588 318 aa15.52■□□□□ 0.07
CCDC28A-202ENST00000611852 STX3Q13277 289 aa15.52■□□□□ 0.07
CCDC28A-202ENST00000611852 KCNAB2Q13303 367 aa15.52■□□□□ 0.07
CCDC28A-202ENST00000611852 SPDYAQ5MJ70 313 aa15.52■□□□□ 0.07
CCDC28A-202ENST00000611852 GALNT18Q6P9A2 607 aa15.52■□□□□ 0.07
CCDC28A-202ENST00000611852 Q6ZSR9 355 aa15.52■□□□□ 0.07
CCDC28A-202ENST00000611852 GALNT16Q8N428 558 aa15.52■□□□□ 0.07
CCDC28A-202ENST00000611852 TWIST2Q8WVJ9 160 aa15.52■□□□□ 0.07
CCDC28A-202ENST00000611852 IMMP1LQ96LU5 166 aa15.52■□□□□ 0.07
CCDC28A-202ENST00000611852 SORT1Q99523 831 aa15.52■□□□□ 0.07
CCDC28A-202ENST00000611852 TUBB6Q9BUF5 446 aa15.52■□□□□ 0.07
CCDC28A-202ENST00000611852 MED4Q9NPJ6 270 aa15.52■□□□□ 0.07
CCDC28A-202ENST00000611852 SIRT5Q9NXA8 310 aa15.52■□□□□ 0.07
CCDC28A-202ENST00000611852 TEX10Q9NXF1 929 aaPredicted RBP15.52■□□□□ 0.07
CCDC28A-202ENST00000611852 MCM8Q9UJA3 840 aa15.52■□□□□ 0.07
CCDC28A-202ENST00000611852 TUBD1Q9UJT1 453 aa15.52■□□□□ 0.07
CCDC28A-202ENST00000611852 ATRXP46100 2492 aa15.51■□□□□ 0.07
CCDC28A-202ENST00000611852 A6NL46 340 aa15.51■□□□□ 0.07
CCDC28A-202ENST00000611852 NPIPB8E9PQR5 432 aa15.51■□□□□ 0.07
CCDC28A-202ENST00000611852 MKRN2OSH3BPM6 223 aa15.51■□□□□ 0.07
CCDC28A-202ENST00000611852 SLC28A1O00337 649 aa15.51■□□□□ 0.07
CCDC28A-202ENST00000611852 LDB3O75112 727 aa15.51■□□□□ 0.07
CCDC28A-202ENST00000611852 SNUPNO95149 360 aaKnown RBP15.51■□□□□ 0.07
CCDC28A-202ENST00000611852 AIFM1O95831 613 aa15.51■□□□□ 0.07
CCDC28A-202ENST00000611852 LINC00032P0C843 101 aa15.51■□□□□ 0.07
CCDC28A-202ENST00000611852 NR2F6P10588 404 aa15.51■□□□□ 0.07
CCDC28A-202ENST00000611852 PRPH2P23942 346 aa15.51■□□□□ 0.07
CCDC28A-202ENST00000611852 LY6DQ14210 128 aa15.51■□□□□ 0.07
CCDC28A-202ENST00000611852 PARP9Q8IXQ6 854 aa15.51■□□□□ 0.07
CCDC28A-202ENST00000611852 AMER2Q8N7J2 671 aa15.51■□□□□ 0.07
CCDC28A-202ENST00000611852 ZNF781Q8N8C0 355 aa15.51■□□□□ 0.07
CCDC28A-202ENST00000611852 OR2T11Q8NH01 316 aa15.51■□□□□ 0.07
CCDC28A-202ENST00000611852 TANKQ92844 425 aa15.51■□□□□ 0.07
CCDC28A-202ENST00000611852 ANKRD9Q96BM1 317 aaPredicted RBP15.51■□□□□ 0.07
CCDC28A-202ENST00000611852 ABHD17AQ96GS6 310 aa15.51■□□□□ 0.07
CCDC28A-202ENST00000611852 RAP2CQ9Y3L5 183 aa15.51■□□□□ 0.07
CCDC28A-202ENST00000611852 DOCK10Q96BY6 2186 aa15.51■□□□□ 0.07
CCDC28A-202ENST00000611852 GLOD5A6NK44 160 aa15.5■□□□□ 0.07
CCDC28A-202ENST00000611852 WASHC1A8K0Z3 465 aa15.5■□□□□ 0.07
CCDC28A-202ENST00000611852 PIP5K1BO14986 540 aa15.5■□□□□ 0.07
CCDC28A-202ENST00000611852 RGS14O43566 566 aa15.5■□□□□ 0.07
CCDC28A-202ENST00000611852 PCDH7O60245 1069 aa15.5■□□□□ 0.07
CCDC28A-202ENST00000611852 FGF17O60258 216 aa15.5■□□□□ 0.07
CCDC28A-202ENST00000611852 TIA1P31483 386 aaKnown RBP eCLIP15.5■□□□□ 0.07
CCDC28A-202ENST00000611852 ACTN3Q08043 901 aaPredicted RBP15.5■□□□□ 0.07
CCDC28A-202ENST00000611852 STX4Q12846 297 aa15.5■□□□□ 0.07
CCDC28A-202ENST00000611852 NDUFAF5Q5TEU4 345 aa15.5■□□□□ 0.07
CCDC28A-202ENST00000611852 PAPD4Q6PIY7 484 aaKnown RBP15.5■□□□□ 0.07
CCDC28A-202ENST00000611852 DDIASQ8IXT1 998 aa15.5■□□□□ 0.07
CCDC28A-202ENST00000611852 LSM14AQ8ND56 463 aaKnown RBP15.5■□□□□ 0.07
CCDC28A-202ENST00000611852 FDCSPQ8NFU4 85 aa15.5■□□□□ 0.07
CCDC28A-202ENST00000611852 RAB3IL1Q8TBN0 382 aa15.5■□□□□ 0.07
CCDC28A-202ENST00000611852 UCN3Q969E3 161 aa15.5■□□□□ 0.07
CCDC28A-202ENST00000611852 TM4SF18Q96CE8 201 aa15.5■□□□□ 0.07
CCDC28A-202ENST00000611852 METTL2AQ96IZ6 378 aaKnown RBP15.5■□□□□ 0.07
CCDC28A-202ENST00000611852 BBC3Q96PG8 261 aaPredicted RBP15.5■□□□□ 0.07
CCDC28A-202ENST00000611852 LPAR4Q99677 370 aa15.5■□□□□ 0.07
CCDC28A-202ENST00000611852 ALOXE3Q9BYJ1 711 aa15.5■□□□□ 0.07
CCDC28A-202ENST00000611852 ILKAPQ9H0C8 392 aaPredicted RBP15.5■□□□□ 0.07
CCDC28A-202ENST00000611852 WDR41Q9HAD4 459 aa15.5■□□□□ 0.07
CCDC28A-202ENST00000611852 FAM53CQ9NYF3 392 aa15.5■□□□□ 0.07
CCDC28A-202ENST00000611852 HAO1Q9UJM8 370 aa15.5■□□□□ 0.07
CCDC28A-202ENST00000611852 EPB41L3Q9Y2J2 1087 aaPredicted RBP15.5■□□□□ 0.07
CCDC28A-202ENST00000611852 PCDHGA9Q9Y5G4 932 aaKnown RBP15.5■□□□□ 0.07
CCDC28A-202ENST00000611852 GNG14A0A1W2PPG7 69 aa15.49■□□□□ 0.07
CCDC28A-202ENST00000611852 GUCY1B2O75343 617 aa15.49■□□□□ 0.07
CCDC28A-202ENST00000611852 PRR35P0CG20 571 aa15.49■□□□□ 0.07
CCDC28A-202ENST00000611852 ICAM2P13598 275 aa15.49■□□□□ 0.07
CCDC28A-202ENST00000611852 ITGA3P26006 1051 aa15.49■□□□□ 0.07
CCDC28A-202ENST00000611852 PPP2R1BP30154 601 aa15.49■□□□□ 0.07
CCDC28A-202ENST00000611852 TRA2BP62995 288 aaKnown RBP15.49■□□□□ 0.07
CCDC28A-202ENST00000611852 IGLV3-21P80748 117 aaPredicted RBP15.49■□□□□ 0.07
CCDC28A-202ENST00000611852 ID2Q02363 134 aa15.49■□□□□ 0.07
CCDC28A-202ENST00000611852 RAPSNQ13702 412 aa15.49■□□□□ 0.07
CCDC28A-202ENST00000611852 MYBPC3Q14896 1274 aa15.49■□□□□ 0.07
CCDC28A-202ENST00000611852 KIAA0040Q15053 153 aa15.49■□□□□ 0.07
CCDC28A-202ENST00000611852 PLAG1Q6DJT9 500 aa15.49■□□□□ 0.07
CCDC28A-202ENST00000611852 TRIM42Q8IWZ5 723 aa15.49■□□□□ 0.07
CCDC28A-202ENST00000611852 OR4N5Q8IXE1 308 aa15.49■□□□□ 0.07
CCDC28A-202ENST00000611852 KBTBD2Q8IY47 623 aa15.49■□□□□ 0.07
CCDC28A-202ENST00000611852 THOC3Q96J01 351 aaKnown RBP15.49■□□□□ 0.07
CCDC28A-202ENST00000611852 SLC25A23Q9BV35 468 aa15.49■□□□□ 0.07
CCDC28A-202ENST00000611852 NUDT9Q9BW91 350 aa15.49■□□□□ 0.07
CCDC28A-202ENST00000611852 EBPLQ9BY08 206 aa15.49■□□□□ 0.07
CCDC28A-202ENST00000611852 MANSC1Q9H8J5 431 aa15.49■□□□□ 0.07
CCDC28A-202ENST00000611852 C1orf109Q9NX04 203 aa15.49■□□□□ 0.07
CCDC28A-202ENST00000611852 GPR83Q9NYM4 423 aa15.49■□□□□ 0.07
CCDC28A-202ENST00000611852 VTI1BQ9UEU0 232 aa15.49■□□□□ 0.07
CCDC28A-202ENST00000611852 RALYQ9UKM9 306 aaKnown RBP15.49■□□□□ 0.07
CCDC28A-202ENST00000611852 MYOCOSA0A1B0GUC4 107 aa15.48■□□□□ 0.07
CCDC28A-202ENST00000611852 SYNDIG1LA6NDD5 238 aa15.48■□□□□ 0.07
CCDC28A-202ENST00000611852 PGRMC2O15173 223 aa15.48■□□□□ 0.07
CCDC28A-202ENST00000611852 SNNO75324 88 aaPredicted RBP15.48■□□□□ 0.07
CCDC28A-202ENST00000611852 SEC22BO75396 215 aa15.48■□□□□ 0.07
CCDC28A-202ENST00000611852 SERPINA7P05543 415 aa15.48■□□□□ 0.07
CCDC28A-202ENST00000611852 CELA2AP08217 269 aa15.48■□□□□ 0.07
CCDC28A-202ENST00000611852 SFTPCP11686 197 aa15.48■□□□□ 0.07
CCDC28A-202ENST00000611852 RPL14P50914 215 aaKnown RBP15.48■□□□□ 0.07
CCDC28A-202ENST00000611852 PPP2R2AP63151 447 aa15.48■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms