RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 TRIM45Q9H8W5 580 aaPredicted RBP17.51■□□□□ 0.39
UPF1-210ENST00000600689 STMN3Q9NZ72 180 aa17.51■□□□□ 0.39
UPF1-210ENST00000600689 CHD5Q8TDI0 1954 aa17.5■□□□□ 0.39
UPF1-210ENST00000600689 C1orf226A1L170 272 aa17.5■□□□□ 0.39
UPF1-210ENST00000600689 HMGA1P17096 107 aaKnown RBP17.5■□□□□ 0.39
UPF1-210ENST00000600689 ENDOUP21128 410 aaKnown RBP17.5■□□□□ 0.39
UPF1-210ENST00000600689 BDKRB1P46663 353 aa17.5■□□□□ 0.39
UPF1-210ENST00000600689 ZNF91Q05481 1191 aa17.5■□□□□ 0.39
UPF1-210ENST00000600689 IL18Q14116 193 aa17.5■□□□□ 0.39
UPF1-210ENST00000600689 INSL4Q14641 139 aa17.5■□□□□ 0.39
UPF1-210ENST00000600689 POM121L1PQ3SYA9 428 aa17.5■□□□□ 0.39
UPF1-210ENST00000600689 VN1R5Q7Z5H4 357 aa17.5■□□□□ 0.39
UPF1-210ENST00000600689 TMPRSS11BQ86T26 416 aa17.5■□□□□ 0.39
UPF1-210ENST00000600689 THOC6Q86W42 341 aaKnown RBP17.5■□□□□ 0.39
UPF1-210ENST00000600689 GATAD2BQ8WXI9 593 aa17.5■□□□□ 0.39
UPF1-210ENST00000600689 SORBS1Q9BX66 1292 aaKnown RBP17.5■□□□□ 0.39
UPF1-210ENST00000600689 RDH14Q9HBH5 336 aa17.5■□□□□ 0.39
UPF1-210ENST00000600689 UCKL1Q9NWZ5 548 aa17.5■□□□□ 0.39
UPF1-210ENST00000600689 TXNL4BQ9NX01 149 aaKnown RBP17.5■□□□□ 0.39
UPF1-210ENST00000600689 TMCC3Q9ULS5 477 aa17.5■□□□□ 0.39
UPF1-210ENST00000600689 SPEF1Q9Y4P9 236 aa17.5■□□□□ 0.39
UPF1-210ENST00000600689 PLOD3O60568 738 aa17.5■□□□□ 0.39
UPF1-210ENST00000600689 MLIPQ5VWP3 458 aa17.5■□□□□ 0.39
UPF1-210ENST00000600689 ZNF57Q68EA5 555 aaPredicted RBP17.5■□□□□ 0.39
UPF1-210ENST00000600689 NATD1Q8N6N6 113 aa17.5■□□□□ 0.39
UPF1-210ENST00000600689 FAM46DQ8NEK8 389 aa17.5■□□□□ 0.39
UPF1-210ENST00000600689 OR8H1Q8NGG4 311 aa17.5■□□□□ 0.39
UPF1-210ENST00000600689 TMEM80Q96HE8 168 aa17.5■□□□□ 0.39
UPF1-210ENST00000600689 TAPBPLQ9BX59 468 aa17.5■□□□□ 0.39
UPF1-210ENST00000600689 BRD9Q9H8M2 597 aa17.5■□□□□ 0.39
UPF1-210ENST00000600689 CLEC4EQ9ULY5 219 aa17.5■□□□□ 0.39
UPF1-210ENST00000600689 STUB1Q9UNE7 303 aa17.5■□□□□ 0.39
UPF1-210ENST00000600689 TRAPPC4Q9Y296 219 aa17.5■□□□□ 0.39
UPF1-210ENST00000600689 SLC2A2P11168 524 aaPredicted RBP17.49■□□□□ 0.39
UPF1-210ENST00000600689 CYP2A6P11509 494 aaPredicted RBP17.49■□□□□ 0.39
UPF1-210ENST00000600689 RPS25P62851 125 aaKnown RBP17.49■□□□□ 0.39
UPF1-210ENST00000600689 RAE1P78406 368 aaKnown RBP17.49■□□□□ 0.39
UPF1-210ENST00000600689 ELAVL2Q12926 359 aaKnown RBP17.49■□□□□ 0.39
UPF1-210ENST00000600689 COL9A2Q14055 689 aaPredicted RBP17.49■□□□□ 0.39
UPF1-210ENST00000600689 SEC23BQ15437 767 aa17.49■□□□□ 0.39
UPF1-210ENST00000600689 GPR19Q15760 415 aa17.49■□□□□ 0.39
UPF1-210ENST00000600689 ZNF800Q2TB10 664 aaPredicted RBP eCLIP17.49■□□□□ 0.39
UPF1-210ENST00000600689 SLC8B1Q6J4K2 584 aa17.49■□□□□ 0.39
UPF1-210ENST00000600689 KIAA1841Q6NSI8 718 aa17.49■□□□□ 0.39
UPF1-210ENST00000600689 PRR23CQ6ZRP0 262 aa17.49■□□□□ 0.39
UPF1-210ENST00000600689 PHC2Q8IXK0 858 aa17.49■□□□□ 0.39
UPF1-210ENST00000600689 HUS1BQ8NHY5 278 aa17.49■□□□□ 0.39
UPF1-210ENST00000600689 SLC22A12Q96S37 553 aa17.49■□□□□ 0.39
UPF1-210ENST00000600689 NELL2Q99435 816 aa17.49■□□□□ 0.39
UPF1-210ENST00000600689 WACQ9BTA9 647 aa17.49■□□□□ 0.39
UPF1-210ENST00000600689 ZNF670-ZNF695F2Z2N8 137 aa17.49■□□□□ 0.39
UPF1-210ENST00000600689 OR56A5P0C7T3 313 aa17.49■□□□□ 0.39
UPF1-210ENST00000600689 PTNP21246 168 aa17.49■□□□□ 0.39
UPF1-210ENST00000600689 CSTF2P33240 577 aaKnown RBP eCLIP17.49■□□□□ 0.39
UPF1-210ENST00000600689 SMAD3P84022 425 aaKnown RBP17.49■□□□□ 0.39
UPF1-210ENST00000600689 LRRC32Q14392 662 aa17.49■□□□□ 0.39
UPF1-210ENST00000600689 TEAD4Q15561 434 aa17.49■□□□□ 0.39
UPF1-210ENST00000600689 PGBD3Q8N328 593 aa17.49■□□□□ 0.39
UPF1-210ENST00000600689 L3MBTL4Q8NA19 623 aa17.49■□□□□ 0.39
UPF1-210ENST00000600689 OR52P1PQ8NH57 321 aa17.49■□□□□ 0.39
UPF1-210ENST00000600689 POP5Q969H6 163 aaKnown RBP17.49■□□□□ 0.39
UPF1-210ENST00000600689 SLC12A9Q9BXP2 914 aa17.49■□□□□ 0.39
UPF1-210ENST00000600689 SEC14L4Q9UDX3 406 aa17.49■□□□□ 0.39
UPF1-210ENST00000600689 GPR52Q9Y2T5 361 aa17.49■□□□□ 0.39
UPF1-210ENST00000600689 PLXNA4Q9HCM2 1894 aa17.49■□□□□ 0.39
UPF1-210ENST00000600689 HPGDSO60760 199 aa17.49■□□□□ 0.39
UPF1-210ENST00000600689 C2orf80Q0P641 193 aa17.49■□□□□ 0.39
UPF1-210ENST00000600689 TARDBPQ13148 414 aaKnown RBP eCLIP17.49■□□□□ 0.39
UPF1-210ENST00000600689 WSCD2Q2TBF2 565 aa17.49■□□□□ 0.39
UPF1-210ENST00000600689 SLC35F1Q5T1Q4 408 aa17.49■□□□□ 0.39
UPF1-210ENST00000600689 CRTC1Q6UUV9 634 aa17.49■□□□□ 0.39
UPF1-210ENST00000600689 OR4M1Q8NGD0 313 aa17.49■□□□□ 0.39
UPF1-210ENST00000600689 ASB11Q8WXH4 323 aa17.49■□□□□ 0.39
UPF1-210ENST00000600689 AUTS2Q8WXX7 1259 aa17.49■□□□□ 0.39
UPF1-210ENST00000600689 CHST8Q9H2A9 424 aa17.49■□□□□ 0.39
UPF1-210ENST00000600689 IFNW1P05000 195 aa17.48■□□□□ 0.39
UPF1-210ENST00000600689 LIM2P55344 173 aa17.48■□□□□ 0.39
UPF1-210ENST00000600689 C1DQ13901 141 aaKnown RBP17.48■□□□□ 0.39
UPF1-210ENST00000600689 DDI2Q5TDH0 399 aa17.48■□□□□ 0.39
UPF1-210ENST00000600689 ASB18Q6ZVZ8 466 aa17.48■□□□□ 0.39
UPF1-210ENST00000600689 CCDC28AQ8IWP9 274 aa17.48■□□□□ 0.39
UPF1-210ENST00000600689 Q8N402 240 aa17.48■□□□□ 0.39
UPF1-210ENST00000600689 RIPOR3Q96MK2 946 aa17.48■□□□□ 0.39
UPF1-210ENST00000600689 WFDC6Q9BQY6 131 aa17.48■□□□□ 0.39
UPF1-210ENST00000600689 C5AR2Q9P296 337 aa17.48■□□□□ 0.39
UPF1-210ENST00000600689 FTSJ1Q9UET6 329 aa17.48■□□□□ 0.39
UPF1-210ENST00000600689 PRELID1Q9Y255 219 aa17.48■□□□□ 0.39
UPF1-210ENST00000600689 ZAR1LA6NP61 321 aa17.48■□□□□ 0.39
UPF1-210ENST00000600689 CASKO14936 926 aa17.48■□□□□ 0.39
UPF1-210ENST00000600689 NOS1APO75052 506 aaPredicted RBP17.48■□□□□ 0.39
UPF1-210ENST00000600689 MSL3P1P0C860 447 aa17.48■□□□□ 0.39
UPF1-210ENST00000600689 POU3F3P20264 500 aaPredicted RBP17.48■□□□□ 0.39
UPF1-210ENST00000600689 PSMA3P25788 255 aa17.48■□□□□ 0.39
UPF1-210ENST00000600689 PTGER1P34995 402 aa17.48■□□□□ 0.39
UPF1-210ENST00000600689 GSTM5P46439 218 aa17.48■□□□□ 0.39
UPF1-210ENST00000600689 RAB8AP61006 207 aa17.48■□□□□ 0.39
UPF1-210ENST00000600689 RNASE12Q5GAN4 147 aaKnown RBP17.48■□□□□ 0.39
UPF1-210ENST00000600689 TRIM69Q86WT6 500 aa17.48■□□□□ 0.39
UPF1-210ENST00000600689 TMC8Q8IU68 726 aa17.48■□□□□ 0.39
UPF1-210ENST00000600689 CREB3L4Q8TEY5 395 aa17.48■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms