RNA–Protein interactions for RNA: ENST00000598907.5

SHKBP1-218, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 738 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-218ENST00000598907 ATG9BQ674R7 924 aa13.04□□□□□ -0.32
SHKBP1-218ENST00000598907 FGD2Q7Z6J4 655 aa13.04□□□□□ -0.32
SHKBP1-218ENST00000598907 MTERF4Q7Z6M4 381 aaKnown RBP13.04□□□□□ -0.32
SHKBP1-218ENST00000598907 MCATQ8IVS2 390 aaKnown RBP13.04□□□□□ -0.32
SHKBP1-218ENST00000598907 CHERPQ8IWX8 916 aaKnown RBP13.04□□□□□ -0.32
SHKBP1-218ENST00000598907 TEX9Q8N6V9 391 aa13.04□□□□□ -0.32
SHKBP1-218ENST00000598907 CCNYL1Q8N7R7 359 aa13.04□□□□□ -0.32
SHKBP1-218ENST00000598907 SLC22A18Q96BI1 424 aa13.04□□□□□ -0.32
SHKBP1-218ENST00000598907 SIGLEC12Q96PQ1 595 aa13.04□□□□□ -0.32
SHKBP1-218ENST00000598907 HAUS8Q9BT25 410 aa13.04□□□□□ -0.32
SHKBP1-218ENST00000598907 NTMT1Q9BV86 223 aa13.04□□□□□ -0.32
SHKBP1-218ENST00000598907 CAPS2Q9BXY5 557 aa13.04□□□□□ -0.32
SHKBP1-218ENST00000598907 C20orf27Q9GZN8 174 aa13.04□□□□□ -0.32
SHKBP1-218ENST00000598907 RIC8BQ9NVN3 520 aa13.04□□□□□ -0.32
SHKBP1-218ENST00000598907 STMN3Q9NZ72 180 aa13.04□□□□□ -0.32
SHKBP1-218ENST00000598907 ZNF225Q9UK10 706 aa13.04□□□□□ -0.32
SHKBP1-218ENST00000598907 SH2B3Q9UQQ2 575 aa13.04□□□□□ -0.32
SHKBP1-218ENST00000598907 HRNRQ86YZ3 2850 aaPredicted RBP13.04□□□□□ -0.32
SHKBP1-218ENST00000598907 UBFD1O14562 309 aaKnown RBP13.03□□□□□ -0.32
SHKBP1-218ENST00000598907 ITM2AO43736 263 aa13.03□□□□□ -0.32
SHKBP1-218ENST00000598907 SNUPNO95149 360 aaKnown RBP13.03□□□□□ -0.32
SHKBP1-218ENST00000598907 FKBP9O95302 570 aa13.03□□□□□ -0.32
SHKBP1-218ENST00000598907 ONECUT2O95948 504 aa13.03□□□□□ -0.32
SHKBP1-218ENST00000598907 PSMB5P28074 263 aa13.03□□□□□ -0.32
SHKBP1-218ENST00000598907 ABCE1P61221 599 aaKnown RBP13.03□□□□□ -0.32
SHKBP1-218ENST00000598907 YBX1P67809 324 aaKnown RBP13.03□□□□□ -0.32
SHKBP1-218ENST00000598907 ABATP80404 500 aa13.03□□□□□ -0.32
SHKBP1-218ENST00000598907 OCRLQ01968 901 aa13.03□□□□□ -0.32
SHKBP1-218ENST00000598907 TRAF3Q13114 568 aa13.03□□□□□ -0.32
SHKBP1-218ENST00000598907 STX3Q13277 289 aa13.03□□□□□ -0.32
SHKBP1-218ENST00000598907 SNTB1Q13884 538 aaKnown RBP13.03□□□□□ -0.32
SHKBP1-218ENST00000598907 ARL13AQ5H913 290 aaPredicted RBP13.03□□□□□ -0.32
SHKBP1-218ENST00000598907 CFAP157Q5JU67 520 aa13.03□□□□□ -0.32
SHKBP1-218ENST00000598907 ICE2Q659A1 982 aa13.03□□□□□ -0.32
SHKBP1-218ENST00000598907 ATG16L1Q676U5 607 aa13.03□□□□□ -0.32
SHKBP1-218ENST00000598907 TAX1BP1Q86VP1 789 aa13.03□□□□□ -0.32
SHKBP1-218ENST00000598907 SIAH3Q8IW03 269 aa13.03□□□□□ -0.32
SHKBP1-218ENST00000598907 BEST3Q8N1M1 668 aa13.03□□□□□ -0.32
SHKBP1-218ENST00000598907 TTC29Q8NA56 475 aaPredicted RBP13.03□□□□□ -0.32
SHKBP1-218ENST00000598907 OR2L3Q8NG85 312 aa13.03□□□□□ -0.32
SHKBP1-218ENST00000598907 LILRB4Q8NHJ6 448 aa13.03□□□□□ -0.32
SHKBP1-218ENST00000598907 TRPC4APQ8TEL6 797 aa13.03□□□□□ -0.32
SHKBP1-218ENST00000598907 DYDC1Q8WWB3 177 aa13.03□□□□□ -0.32
SHKBP1-218ENST00000598907 NEIL2Q969S2 332 aa13.03□□□□□ -0.32
SHKBP1-218ENST00000598907 WDR34Q96EX3 536 aa13.03□□□□□ -0.32
SHKBP1-218ENST00000598907 SORT1Q99523 831 aa13.03□□□□□ -0.32
SHKBP1-218ENST00000598907 CHRNA10Q9GZZ6 450 aa13.03□□□□□ -0.32
SHKBP1-218ENST00000598907 NOL11Q9H8H0 719 aaKnown RBP13.03□□□□□ -0.32
SHKBP1-218ENST00000598907 IPPKQ9H8X2 491 aa13.03□□□□□ -0.32
SHKBP1-218ENST00000598907 SEMA4BQ9NPR2 832 aaPredicted RBP13.03□□□□□ -0.32
SHKBP1-218ENST00000598907 ZNF282Q9UDV7 671 aaPredicted RBP13.03□□□□□ -0.32
SHKBP1-218ENST00000598907 TAC3Q9UHF0 121 aa13.03□□□□□ -0.32
SHKBP1-218ENST00000598907 HAO1Q9UJM8 370 aa13.03□□□□□ -0.32
SHKBP1-218ENST00000598907 ADAM21Q9UKJ8 722 aa13.03□□□□□ -0.32
SHKBP1-218ENST00000598907 KLK4Q9Y5K2 254 aa13.03□□□□□ -0.32
SHKBP1-218ENST00000598907 KCNE2Q9Y6J6 123 aa13.03□□□□□ -0.32
SHKBP1-218ENST00000598907 IGKV1-8A0A0C4DH67 115 aa13.02□□□□□ -0.33
SHKBP1-218ENST00000598907 POLR3GO15318 223 aaPredicted RBP13.02□□□□□ -0.33
SHKBP1-218ENST00000598907 NEFHP12036 1026 aa13.02□□□□□ -0.33
SHKBP1-218ENST00000598907 ZNF24P17028 368 aa13.02□□□□□ -0.33
SHKBP1-218ENST00000598907 GNAZP19086 355 aa13.02□□□□□ -0.33
SHKBP1-218ENST00000598907 PTGER1P34995 402 aa13.02□□□□□ -0.33
SHKBP1-218ENST00000598907 GRIA3P42263 894 aa13.02□□□□□ -0.33
SHKBP1-218ENST00000598907 SLC1A6P48664 564 aa13.02□□□□□ -0.33
SHKBP1-218ENST00000598907 PKNOX1P55347 436 aa13.02□□□□□ -0.33
SHKBP1-218ENST00000598907 LCP2Q13094 533 aa13.02□□□□□ -0.33
SHKBP1-218ENST00000598907 GRM7Q14831 915 aa13.02□□□□□ -0.33
SHKBP1-218ENST00000598907 TBCCQ15814 346 aa13.02□□□□□ -0.33
SHKBP1-218ENST00000598907 SLCO4C1Q6ZQN7 724 aa13.02□□□□□ -0.33
SHKBP1-218ENST00000598907 RIPOR1Q6ZS17 1223 aa13.02□□□□□ -0.33
SHKBP1-218ENST00000598907 LAPTM4BQ86VI4 370 aa13.02□□□□□ -0.33
SHKBP1-218ENST00000598907 CLYBLQ8N0X4 340 aa13.02□□□□□ -0.33
SHKBP1-218ENST00000598907 RPRMLQ8N4K4 120 aa13.02□□□□□ -0.33
SHKBP1-218ENST00000598907 SNX31Q8N9S9 440 aa13.02□□□□□ -0.33
SHKBP1-218ENST00000598907 L3MBTL4Q8NA19 623 aa13.02□□□□□ -0.33
SHKBP1-218ENST00000598907 ABHD11Q8NFV4 315 aa13.02□□□□□ -0.33
SHKBP1-218ENST00000598907 OR4K1Q8NGD4 311 aa13.02□□□□□ -0.33
SHKBP1-218ENST00000598907 OR52B6Q8NGF0 335 aa13.02□□□□□ -0.33
SHKBP1-218ENST00000598907 GOT1L1Q8NHS2 421 aaPredicted RBP13.02□□□□□ -0.33
SHKBP1-218ENST00000598907 PPP1R14CQ8TAE6 165 aa13.02□□□□□ -0.33
SHKBP1-218ENST00000598907 LRRC8CQ8TDW0 803 aa13.02□□□□□ -0.33
SHKBP1-218ENST00000598907 SLC5A11Q8WWX8 675 aa13.02□□□□□ -0.33
SHKBP1-218ENST00000598907 ZNF382Q96SR6 550 aa13.02□□□□□ -0.33
SHKBP1-218ENST00000598907 YIPF2Q9BWQ6 316 aa13.02□□□□□ -0.33
SHKBP1-218ENST00000598907 EHD1Q9H4M9 534 aa13.02□□□□□ -0.33
SHKBP1-218ENST00000598907 ZNF304Q9HCX3 659 aa13.02□□□□□ -0.33
SHKBP1-218ENST00000598907 THAP1Q9NVV9 213 aa13.02□□□□□ -0.33
SHKBP1-218ENST00000598907 TEKT2Q9UIF3 430 aa13.02□□□□□ -0.33
SHKBP1-218ENST00000598907 EDARQ9UNE0 448 aa13.02□□□□□ -0.33
SHKBP1-218ENST00000598907 STK38LQ9Y2H1 464 aa13.02□□□□□ -0.33
SHKBP1-218ENST00000598907 EPB41L3Q9Y2J2 1087 aaPredicted RBP13.02□□□□□ -0.33
SHKBP1-218ENST00000598907 DYRK1BQ9Y463 629 aa13.02□□□□□ -0.33
SHKBP1-218ENST00000598907 ANGPTL3Q9Y5C1 460 aa13.02□□□□□ -0.33
SHKBP1-218ENST00000598907 GTF3C1Q12789 2109 aa13.01□□□□□ -0.33
SHKBP1-218ENST00000598907 ASPDHA6ND91 283 aa13.01□□□□□ -0.33
SHKBP1-218ENST00000598907 IDSB3KWA1 339 aa13.01□□□□□ -0.33
SHKBP1-218ENST00000598907 CLGNO14967 610 aa13.01□□□□□ -0.33
SHKBP1-218ENST00000598907 UGDHO60701 494 aa13.01□□□□□ -0.33
SHKBP1-218ENST00000598907 LYPLA1O75608 230 aaPredicted RBP13.01□□□□□ -0.33
SHKBP1-218ENST00000598907 CCNDBP1O95273 360 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms