RNA–Protein interactions for RNA: ENST00000578700.5

SS18-210, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-210ENST00000578700 SNX7Q9UNH6 387 aa9.65□□□□□ -0.86
SS18-210ENST00000578700 AP3M1Q9Y2T2 418 aa9.65□□□□□ -0.86
SS18-210ENST00000578700 FBN2P35556 2912 aa9.65□□□□□ -0.87
SS18-210ENST00000578700 APCP25054 2843 aa9.64□□□□□ -0.87
SS18-210ENST00000578700 LILRA5A6NI73 299 aa9.64□□□□□ -0.87
SS18-210ENST00000578700 A6NL46 340 aa9.64□□□□□ -0.87
SS18-210ENST00000578700 ISM1B1AKI9 464 aa9.64□□□□□ -0.87
SS18-210ENST00000578700 H7BY64 318 aa9.64□□□□□ -0.87
SS18-210ENST00000578700 PRAMEF4O60810 478 aa9.64□□□□□ -0.87
SS18-210ENST00000578700 DNAJA2O60884 412 aa9.64□□□□□ -0.87
SS18-210ENST00000578700 GMNNO75496 209 aa9.64□□□□□ -0.87
SS18-210ENST00000578700 TIAF1O95411 115 aa9.64□□□□□ -0.87
SS18-210ENST00000578700 PSMG1O95456 288 aa9.64□□□□□ -0.87
SS18-210ENST00000578700 C9P02748 559 aa9.64□□□□□ -0.87
SS18-210ENST00000578700 ANKRD34CP0C6C1 535 aa9.64□□□□□ -0.87
SS18-210ENST00000578700 SDC1P18827 310 aa9.64□□□□□ -0.87
SS18-210ENST00000578700 HNRNPH1P31943 449 aaKnown RBP9.64□□□□□ -0.87
SS18-210ENST00000578700 DCTP40126 519 aa9.64□□□□□ -0.87
SS18-210ENST00000578700 SLC19A1P41440 591 aa9.64□□□□□ -0.87
SS18-210ENST00000578700 SLC7A2P52569 658 aa9.64□□□□□ -0.87
SS18-210ENST00000578700 RPS15P62841 145 aaKnown RBP9.64□□□□□ -0.87
SS18-210ENST00000578700 PWP1Q13610 501 aa9.64□□□□□ -0.87
SS18-210ENST00000578700 KIR2DS3Q14952 304 aa9.64□□□□□ -0.87
SS18-210ENST00000578700 KIAA0040Q15053 153 aa9.64□□□□□ -0.87
SS18-210ENST00000578700 PGS1Q32NB8 556 aa9.64□□□□□ -0.87
SS18-210ENST00000578700 FAM174BQ3ZCQ3 159 aa9.64□□□□□ -0.87
SS18-210ENST00000578700 PIGGQ5H8A4 983 aa9.64□□□□□ -0.87
SS18-210ENST00000578700 C6orf10Q5SRN2 563 aa9.64□□□□□ -0.87
SS18-210ENST00000578700 PRAMEF9Q5VWM5 478 aa9.64□□□□□ -0.87
SS18-210ENST00000578700 AAGABQ6PD74 315 aa9.64□□□□□ -0.87
SS18-210ENST00000578700 MSANTD1Q6ZTZ1 278 aa9.64□□□□□ -0.87
SS18-210ENST00000578700 TMEM26Q6ZUK4 368 aa9.64□□□□□ -0.87
SS18-210ENST00000578700 MAMDC2Q7Z304 686 aaPredicted RBP9.64□□□□□ -0.87
SS18-210ENST00000578700 R3HCC1LQ7Z5L2 792 aaKnown RBP9.64□□□□□ -0.87
SS18-210ENST00000578700 DHDDSQ86SQ9 333 aa9.64□□□□□ -0.87
SS18-210ENST00000578700 APLFQ8IW19 511 aaPredicted RBP9.64□□□□□ -0.87
SS18-210ENST00000578700 DPP10Q8N608 796 aa9.64□□□□□ -0.87
SS18-210ENST00000578700 C1orf52Q8N6N3 182 aaKnown RBP9.64□□□□□ -0.87
SS18-210ENST00000578700 CDC26Q8NHZ8 85 aa9.64□□□□□ -0.87
SS18-210ENST00000578700 TESCQ96BS2 214 aa9.64□□□□□ -0.87
SS18-210ENST00000578700 LRRC58Q96CX6 371 aa9.64□□□□□ -0.87
SS18-210ENST00000578700 APIPQ96GX9 242 aa9.64□□□□□ -0.87
SS18-210ENST00000578700 ITCHQ96J02 903 aa9.64□□□□□ -0.87
SS18-210ENST00000578700 LRGUKQ96M69 825 aa9.64□□□□□ -0.87
SS18-210ENST00000578700 PRAP1Q96NZ9 151 aa9.64□□□□□ -0.87
SS18-210ENST00000578700 TSSK3Q96PN8 268 aa9.64□□□□□ -0.87
SS18-210ENST00000578700 OR52E6Q96RD3 313 aa9.64□□□□□ -0.87
SS18-210ENST00000578700 ING2Q9H160 280 aa9.64□□□□□ -0.87
SS18-210ENST00000578700 RHBGQ9H310 441 aa9.64□□□□□ -0.87
SS18-210ENST00000578700 ZNF768Q9H5H4 540 aaKnown RBP9.64□□□□□ -0.87
SS18-210ENST00000578700 RNPEPL1Q9HAU8 725 aa9.64□□□□□ -0.87
SS18-210ENST00000578700 DMRT3Q9NQL9 472 aa9.64□□□□□ -0.87
SS18-210ENST00000578700 POT1Q9NUX5 634 aa9.64□□□□□ -0.87
SS18-210ENST00000578700 TMEM184CQ9NVA4 438 aa9.64□□□□□ -0.87
SS18-210ENST00000578700 STOML1Q9UBI4 398 aa9.64□□□□□ -0.87
SS18-210ENST00000578700 SUCOQ9UBS9 1254 aaKnown RBP9.64□□□□□ -0.87
SS18-210ENST00000578700 ICKQ9UPZ9 632 aa9.64□□□□□ -0.87
SS18-210ENST00000578700 POMPQ9Y244 141 aa9.64□□□□□ -0.87
SS18-210ENST00000578700 OTOGQ6ZRI0 2925 aa9.64□□□□□ -0.87
SS18-210ENST00000578700 CELSR1Q9NYQ6 3014 aa9.64□□□□□ -0.87
SS18-210ENST00000578700 PIKFYVEQ9Y2I7 2098 aa9.63□□□□□ -0.87
SS18-210ENST00000578700 MN1Q10571 1320 aaPredicted RBP9.63□□□□□ -0.87
SS18-210ENST00000578700 POLQO75417 2590 aa9.63□□□□□ -0.87
SS18-210ENST00000578700 TRBC2A0A5B9 178 aa9.63□□□□□ -0.87
SS18-210ENST00000578700 C9JVG2 144 aa9.63□□□□□ -0.87
SS18-210ENST00000578700 H0Y3Z8 333 aa9.63□□□□□ -0.87
SS18-210ENST00000578700 ANKRD28O15084 1053 aa9.63□□□□□ -0.87
SS18-210ENST00000578700 OR1F1O43749 312 aa9.63□□□□□ -0.87
SS18-210ENST00000578700 PCDH7O60245 1069 aa9.63□□□□□ -0.87
SS18-210ENST00000578700 SEMA3DO95025 777 aa9.63□□□□□ -0.87
SS18-210ENST00000578700 FKBP9O95302 570 aa9.63□□□□□ -0.87
SS18-210ENST00000578700 ANP32DO95626 131 aa9.63□□□□□ -0.87
SS18-210ENST00000578700 CLDN1O95832 211 aa9.63□□□□□ -0.87
SS18-210ENST00000578700 DDAH2O95865 285 aa9.63□□□□□ -0.87
SS18-210ENST00000578700 PGRP06401 933 aa9.63□□□□□ -0.87
SS18-210ENST00000578700 FGF5P12034 268 aa9.63□□□□□ -0.87
SS18-210ENST00000578700 COX7A2P14406 83 aa9.63□□□□□ -0.87
SS18-210ENST00000578700 XRCC1P18887 633 aaPredicted RBP9.63□□□□□ -0.87
SS18-210ENST00000578700 TIA1P31483 386 aaKnown RBP eCLIP9.63□□□□□ -0.87
SS18-210ENST00000578700 KIR3DL1P43629 444 aa9.63□□□□□ -0.87
SS18-210ENST00000578700 UBE2IP63279 158 aaKnown RBP9.63□□□□□ -0.87
SS18-210ENST00000578700 REEP5Q00765 189 aa9.63□□□□□ -0.87
SS18-210ENST00000578700 MEF2AQ02078 507 aaPredicted RBP9.63□□□□□ -0.87
SS18-210ENST00000578700 TGM3Q08188 693 aa9.63□□□□□ -0.87
SS18-210ENST00000578700 TRAP1Q12931 704 aaKnown RBP9.63□□□□□ -0.87
SS18-210ENST00000578700 BNIP2Q12982 314 aa9.63□□□□□ -0.87
SS18-210ENST00000578700 TRIM25Q14258 630 aaKnown RBP9.63□□□□□ -0.87
SS18-210ENST00000578700 KCNAB1Q14722 419 aa9.63□□□□□ -0.87
SS18-210ENST00000578700 RCN1Q15293 331 aa9.63□□□□□ -0.87
SS18-210ENST00000578700 ANXA8L1Q5VT79 327 aa9.63□□□□□ -0.87
SS18-210ENST00000578700 PWWP2BQ6NUJ5 590 aa9.63□□□□□ -0.87
SS18-210ENST00000578700 ARMC6Q6NXE6 501 aa9.63□□□□□ -0.87
SS18-210ENST00000578700 KLHL35Q6PF15 583 aa9.63□□□□□ -0.87
SS18-210ENST00000578700 GPR180Q86V85 440 aa9.63□□□□□ -0.87
SS18-210ENST00000578700 RETREG3Q86VR2 466 aa9.63□□□□□ -0.87
SS18-210ENST00000578700 LINC01555Q8NAE3 123 aa9.63□□□□□ -0.87
SS18-210ENST00000578700 TNIP2Q8NFZ5 429 aa9.63□□□□□ -0.87
SS18-210ENST00000578700 OR4E2Q8NGC2 313 aa9.63□□□□□ -0.87
SS18-210ENST00000578700 CLHC1Q8NHS4 586 aa9.63□□□□□ -0.87
SS18-210ENST00000578700 SLC26A7Q8TE54 656 aa9.63□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms