RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 RASA2Q15283 850 aa14.03□□□□□ -0.16
VPS39-210ENST00000568357 NR6A1Q15406 480 aa14.03□□□□□ -0.16
VPS39-210ENST00000568357 TERF2Q15554 542 aa14.03□□□□□ -0.16
VPS39-210ENST00000568357 EIF2S3LQ2VIR3 472 aaKnown RBP14.03□□□□□ -0.16
VPS39-210ENST00000568357 ZNF468Q5VIY5 522 aaPredicted RBP14.03□□□□□ -0.16
VPS39-210ENST00000568357 C18orf63Q68DL7 685 aa14.03□□□□□ -0.16
VPS39-210ENST00000568357 TTC19Q6DKK2 380 aaPredicted RBP14.03□□□□□ -0.16
VPS39-210ENST00000568357 MRM1Q6IN84 353 aaKnown RBP14.03□□□□□ -0.16
VPS39-210ENST00000568357 TUBA3EQ6PEY2 450 aa14.03□□□□□ -0.16
VPS39-210ENST00000568357 GPR180Q86V85 440 aa14.03□□□□□ -0.16
VPS39-210ENST00000568357 OR4N5Q8IXE1 308 aa14.03□□□□□ -0.16
VPS39-210ENST00000568357 CNPY4Q8N129 248 aa14.03□□□□□ -0.16
VPS39-210ENST00000568357 OR2W6PQ8NHA6 318 aa14.03□□□□□ -0.16
VPS39-210ENST00000568357 PTPMT1Q8WUK0 201 aaPredicted RBP14.03□□□□□ -0.16
VPS39-210ENST00000568357 UCN3Q969E3 161 aa14.03□□□□□ -0.16
VPS39-210ENST00000568357 SIGLEC12Q96PQ1 595 aa14.03□□□□□ -0.16
VPS39-210ENST00000568357 TAAR6Q96RI8 345 aa14.03□□□□□ -0.16
VPS39-210ENST00000568357 PPT2Q9UMR5 302 aa14.03□□□□□ -0.16
VPS39-210ENST00000568357 ASB4Q9Y574 426 aa14.03□□□□□ -0.16
VPS39-210ENST00000568357 A0A1W2PR48 441 aa14.02□□□□□ -0.17
VPS39-210ENST00000568357 A1L4Q6 167 aa14.02□□□□□ -0.17
VPS39-210ENST00000568357 GABRR3A8MPY1 467 aa14.02□□□□□ -0.17
VPS39-210ENST00000568357 ESPNB1AK53 854 aa14.02□□□□□ -0.17
VPS39-210ENST00000568357 G3V2L1 256 aa14.02□□□□□ -0.17
VPS39-210ENST00000568357 PROM1O43490 865 aa14.02□□□□□ -0.17
VPS39-210ENST00000568357 PRAMEF2O60811 474 aa14.02□□□□□ -0.17
VPS39-210ENST00000568357 PRKRAO75569 313 aaKnown RBP14.02□□□□□ -0.17
VPS39-210ENST00000568357 OR4F21O95013 312 aa14.02□□□□□ -0.17
VPS39-210ENST00000568357 PDYNP01213 254 aa14.02□□□□□ -0.17
VPS39-210ENST00000568357 GBAP04062 536 aa14.02□□□□□ -0.17
VPS39-210ENST00000568357 IFNA16P05015 189 aa14.02□□□□□ -0.17
VPS39-210ENST00000568357 KRT15P19012 456 aa14.02□□□□□ -0.17
VPS39-210ENST00000568357 MLF1P58340 268 aa14.02□□□□□ -0.17
VPS39-210ENST00000568357 SRSF11Q05519 484 aaKnown RBP14.02□□□□□ -0.17
VPS39-210ENST00000568357 ELAVL1Q15717 326 aaKnown RBP14.02□□□□□ -0.17
VPS39-210ENST00000568357 SPINK14Q6IE38 97 aa14.02□□□□□ -0.17
VPS39-210ENST00000568357 LGI4Q8N135 537 aa14.02□□□□□ -0.17
VPS39-210ENST00000568357 AENQ8WTP8 325 aaKnown RBP14.02□□□□□ -0.17
VPS39-210ENST00000568357 FAR1Q8WVX9 515 aa14.02□□□□□ -0.17
VPS39-210ENST00000568357 NCLNQ969V3 563 aa14.02□□□□□ -0.17
VPS39-210ENST00000568357 SERPINI1Q99574 410 aa14.02□□□□□ -0.17
VPS39-210ENST00000568357 DEFB126Q9BYW3 111 aa14.02□□□□□ -0.17
VPS39-210ENST00000568357 C12orf65Q9H3J6 166 aaKnown RBP14.02□□□□□ -0.17
VPS39-210ENST00000568357 ELOVL6Q9H5J4 265 aa14.02□□□□□ -0.17
VPS39-210ENST00000568357 RPF2Q9H7B2 306 aaKnown RBP14.02□□□□□ -0.17
VPS39-210ENST00000568357 PPCSQ9HAB8 311 aa14.02□□□□□ -0.17
VPS39-210ENST00000568357 ADAP2Q9NPF8 381 aa14.02□□□□□ -0.17
VPS39-210ENST00000568357 AGPAT4Q9NRZ5 378 aa14.02□□□□□ -0.17
VPS39-210ENST00000568357 MS4A12Q9NXJ0 267 aa14.02□□□□□ -0.17
VPS39-210ENST00000568357 SPACA6W5XKT8 324 aa14.02□□□□□ -0.17
VPS39-210ENST00000568357 SCN2AQ99250 2005 aa14.02□□□□□ -0.17
VPS39-210ENST00000568357 TRBV11-1A0A0K0K1C0 115 aa14.01□□□□□ -0.17
VPS39-210ENST00000568357 TLDC2A0PJX2 215 aa14.01□□□□□ -0.17
VPS39-210ENST00000568357 FGF17O60258 216 aa14.01□□□□□ -0.17
VPS39-210ENST00000568357 PRKNO60260 465 aaPredicted RBP14.01□□□□□ -0.17
VPS39-210ENST00000568357 GLRA3O75311 464 aa14.01□□□□□ -0.17
VPS39-210ENST00000568357 SEMA3DO95025 777 aa14.01□□□□□ -0.17
VPS39-210ENST00000568357 PROCP04070 461 aa14.01□□□□□ -0.17
VPS39-210ENST00000568357 FAM58BPP0C7Q3 252 aa14.01□□□□□ -0.17
VPS39-210ENST00000568357 TPP2P29144 1249 aaPredicted RBP14.01□□□□□ -0.17
VPS39-210ENST00000568357 CRHR1P34998 444 aa14.01□□□□□ -0.17
VPS39-210ENST00000568357 CCT5P48643 541 aa14.01□□□□□ -0.17
VPS39-210ENST00000568357 CLCN2P51788 898 aa14.01□□□□□ -0.17
VPS39-210ENST00000568357 RIPPLY3P57055 190 aa14.01□□□□□ -0.17
VPS39-210ENST00000568357 IGLV3-21P80748 117 aaPredicted RBP14.01□□□□□ -0.17
VPS39-210ENST00000568357 TNFRSF17Q02223 184 aa14.01□□□□□ -0.17
VPS39-210ENST00000568357 IFT88Q13099 833 aa14.01□□□□□ -0.17
VPS39-210ENST00000568357 OR1C1Q15619 314 aa14.01□□□□□ -0.17
VPS39-210ENST00000568357 TCHHL1Q5QJ38 904 aaPredicted RBP14.01□□□□□ -0.17
VPS39-210ENST00000568357 C10orf62Q5T681 223 aaPredicted RBP14.01□□□□□ -0.17
VPS39-210ENST00000568357 WDR93Q6P2C0 686 aa14.01□□□□□ -0.17
VPS39-210ENST00000568357 CYP20A1Q6UW02 462 aa14.01□□□□□ -0.17
VPS39-210ENST00000568357 SLC22A9Q8IVM8 553 aa14.01□□□□□ -0.17
VPS39-210ENST00000568357 ARMC10Q8N2F6 343 aa14.01□□□□□ -0.17
VPS39-210ENST00000568357 TMEM132CQ8N3T6 1108 aa14.01□□□□□ -0.17
VPS39-210ENST00000568357 ZNF321PQ8N8H1 164 aa14.01□□□□□ -0.17
VPS39-210ENST00000568357 MDS2Q8NDY4 140 aa14.01□□□□□ -0.17
VPS39-210ENST00000568357 MYRIPQ8NFW9 859 aa14.01□□□□□ -0.17
VPS39-210ENST00000568357 THAP3Q8WTV1 239 aaPredicted RBP14.01□□□□□ -0.17
VPS39-210ENST00000568357 L3HYPDHQ96EM0 354 aa14.01□□□□□ -0.17
VPS39-210ENST00000568357 UTP23Q9BRU9 249 aaKnown RBP14.01□□□□□ -0.17
VPS39-210ENST00000568357 MRPL1Q9BYD6 325 aaKnown RBP14.01□□□□□ -0.17
VPS39-210ENST00000568357 HES7Q9BYE0 225 aa14.01□□□□□ -0.17
VPS39-210ENST00000568357 SLC29A3Q9BZD2 475 aa14.01□□□□□ -0.17
VPS39-210ENST00000568357 ABI3Q9P2A4 366 aa14.01□□□□□ -0.17
VPS39-210ENST00000568357 TRPS1Q9UHF7 1281 aa14.01□□□□□ -0.17
VPS39-210ENST00000568357 PHF11Q9UIL8 331 aa14.01□□□□□ -0.17
VPS39-210ENST00000568357 CLCA3PQ9Y6N3 262 aa14.01□□□□□ -0.17
VPS39-210ENST00000568357 FBN2P35556 2912 aa14.01□□□□□ -0.17
VPS39-210ENST00000568357 ABCA12Q86UK0 2595 aa14.01□□□□□ -0.17
VPS39-210ENST00000568357 CNTRLQ7Z7A1 2325 aa14□□□□□ -0.17
VPS39-210ENST00000568357 GLOD5A6NK44 160 aa14□□□□□ -0.17
VPS39-210ENST00000568357 TMEM200CA6NKL6 621 aa14□□□□□ -0.17
VPS39-210ENST00000568357 C17orf105B2RV13 164 aa14□□□□□ -0.17
VPS39-210ENST00000568357 MANBAO00462 879 aa14□□□□□ -0.17
VPS39-210ENST00000568357 PLIN3O60664 434 aa14□□□□□ -0.17
VPS39-210ENST00000568357 CDH16O75309 829 aa14□□□□□ -0.17
VPS39-210ENST00000568357 NEURL1O76050 574 aa14□□□□□ -0.17
VPS39-210ENST00000568357 KLK1P06870 262 aa14□□□□□ -0.17
VPS39-210ENST00000568357 KRT4P19013 534 aa14□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms