RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 IL3P08700 152 aa20.45■□□□□ 0.86
SNX1-210ENST00000560260 C8orf89P0DMQ9 161 aa20.45■□□□□ 0.86
SNX1-210ENST00000560260 ID2Q02363 134 aa20.45■□□□□ 0.86
SNX1-210ENST00000560260 C6orf136Q5SQH8 315 aa20.45■□□□□ 0.86
SNX1-210ENST00000560260 NDUFAF5Q5TEU4 345 aa20.45■□□□□ 0.86
SNX1-210ENST00000560260 ANKRD37Q7Z713 158 aa20.45■□□□□ 0.86
SNX1-210ENST00000560260 CRLF3Q8IUI8 442 aa20.45■□□□□ 0.86
SNX1-210ENST00000560260 PIWIL2Q8TC59 973 aaKnown RBP20.45■□□□□ 0.86
SNX1-210ENST00000560260 ANKRD9Q96BM1 317 aaPredicted RBP20.45■□□□□ 0.86
SNX1-210ENST00000560260 TUBGCP3Q96CW5 907 aa20.45■□□□□ 0.86
SNX1-210ENST00000560260 METTL2AQ96IZ6 378 aaKnown RBP20.45■□□□□ 0.86
SNX1-210ENST00000560260 PPP3R2Q96LZ3 170 aa20.45■□□□□ 0.86
SNX1-210ENST00000560260 PTCHD1Q96NR3 888 aa20.45■□□□□ 0.86
SNX1-210ENST00000560260 CCT7Q99832 543 aa20.45■□□□□ 0.86
SNX1-210ENST00000560260 RPF2Q9H7B2 306 aaKnown RBP20.45■□□□□ 0.86
SNX1-210ENST00000560260 RIC8BQ9NVN3 520 aa20.45■□□□□ 0.86
SNX1-210ENST00000560260 MS4A12Q9NXJ0 267 aa20.45■□□□□ 0.86
SNX1-210ENST00000560260 HEY2Q9UBP5 337 aa20.45■□□□□ 0.86
SNX1-210ENST00000560260 MRPS33Q9Y291 106 aaKnown RBP20.45■□□□□ 0.86
SNX1-210ENST00000560260 SPACA6W5XKT8 324 aa20.45■□□□□ 0.86
SNX1-210ENST00000560260 LOC102723996A0A087X1L8 192 aa20.44■□□□□ 0.86
SNX1-210ENST00000560260 GNG14A0A1W2PPG7 69 aa20.44■□□□□ 0.86
SNX1-210ENST00000560260 A0A1W2PQ72 361 aa20.44■□□□□ 0.86
SNX1-210ENST00000560260 A0A1W2PS29 197 aa20.44■□□□□ 0.86
SNX1-210ENST00000560260 TCP11X1B4DZS4 312 aa20.44■□□□□ 0.86
SNX1-210ENST00000560260 PRMT3O60678 531 aa20.44■□□□□ 0.86
SNX1-210ENST00000560260 LDB3O75112 727 aa20.44■□□□□ 0.86
SNX1-210ENST00000560260 ANXA4P09525 319 aaPredicted RBP20.44■□□□□ 0.86
SNX1-210ENST00000560260 COX6A1P12074 109 aa20.44■□□□□ 0.86
SNX1-210ENST00000560260 SDC1P18827 310 aa20.44■□□□□ 0.86
SNX1-210ENST00000560260 PPP2R1BP30154 601 aa20.44■□□□□ 0.86
SNX1-210ENST00000560260 BUD31P41223 144 aaPredicted RBP20.44■□□□□ 0.86
SNX1-210ENST00000560260 HSD17B7P56937 341 aa20.44■□□□□ 0.86
SNX1-210ENST00000560260 TAS2R50P59544 299 aa20.44■□□□□ 0.86
SNX1-210ENST00000560260 TRA2BP62995 288 aaKnown RBP20.44■□□□□ 0.86
SNX1-210ENST00000560260 OR4N5Q8IXE1 308 aa20.44■□□□□ 0.86
SNX1-210ENST00000560260 ZSCAN1Q8NBB4 408 aa20.44■□□□□ 0.86
SNX1-210ENST00000560260 OR11G2Q8NGC1 345 aa20.44■□□□□ 0.86
SNX1-210ENST00000560260 PUM2Q8TB72 1066 aaKnown RBP eCLIP20.44■□□□□ 0.86
SNX1-210ENST00000560260 WDR77Q9BQA1 342 aaPredicted RBP20.44■□□□□ 0.86
SNX1-210ENST00000560260 C1orf50Q9BV19 199 aa20.44■□□□□ 0.86
SNX1-210ENST00000560260 PRORYQ9H606 182 aa20.44■□□□□ 0.86
SNX1-210ENST00000560260 AKTIPQ9H8T0 292 aa20.44■□□□□ 0.86
SNX1-210ENST00000560260 P4HTMQ9NXG6 502 aa20.44■□□□□ 0.86
SNX1-210ENST00000560260 C5AR2Q9P296 337 aa20.44■□□□□ 0.86
SNX1-210ENST00000560260 PCDHA9Q9Y5H5 950 aa20.44■□□□□ 0.86
SNX1-210ENST00000560260 TCRBV16S1A1N1A0A5B0 115 aa20.43■□□□□ 0.86
SNX1-210ENST00000560260 PGRMC2O15173 223 aa20.43■□□□□ 0.86
SNX1-210ENST00000560260 EDF1O60869 148 aaKnown RBP20.43■□□□□ 0.86
SNX1-210ENST00000560260 CTNSO60931 367 aa20.43■□□□□ 0.86
SNX1-210ENST00000560260 ZNF763Q0D2J5 394 aa20.43■□□□□ 0.86
SNX1-210ENST00000560260 SLC13A2Q13183 592 aa20.43■□□□□ 0.86
SNX1-210ENST00000560260 PCOLCEQ15113 449 aa20.43■□□□□ 0.86
SNX1-210ENST00000560260 NSDHLQ15738 373 aa20.43■□□□□ 0.86
SNX1-210ENST00000560260 COL28A1Q2UY09 1125 aa20.43■□□□□ 0.86
SNX1-210ENST00000560260 DEFB109BQ30KR1 87 aa20.43■□□□□ 0.86
SNX1-210ENST00000560260 SLC9B1Q4ZJI4 515 aa20.43■□□□□ 0.86
SNX1-210ENST00000560260 ATP6AP1LQ52LC2 224 aa20.43■□□□□ 0.86
SNX1-210ENST00000560260 CPZQ66K79 652 aa20.43■□□□□ 0.86
SNX1-210ENST00000560260 DNAJB14Q8TBM8 379 aa20.43■□□□□ 0.86
SNX1-210ENST00000560260 EGLN2Q96KS0 407 aa20.43■□□□□ 0.86
SNX1-210ENST00000560260 WDR55Q9H6Y2 383 aaPredicted RBP20.43■□□□□ 0.86
SNX1-210ENST00000560260 FBXL4Q9UKA2 621 aa20.43■□□□□ 0.86
SNX1-210ENST00000560260 EXO1Q9UQ84 846 aaKnown RBP20.43■□□□□ 0.86
SNX1-210ENST00000560260 USH1CQ9Y6N9 552 aa20.43■□□□□ 0.86
SNX1-210ENST00000560260 ITPR1Q14643 2758 aa20.42■□□□□ 0.86
SNX1-210ENST00000560260 BCKDHAP12694 445 aa20.42■□□□□ 0.86
SNX1-210ENST00000560260 ACPPP15309 386 aa20.42■□□□□ 0.86
SNX1-210ENST00000560260 MDH1P40925 334 aaKnown RBP20.42■□□□□ 0.86
SNX1-210ENST00000560260 IGLV3-21P80748 117 aaPredicted RBP20.42■□□□□ 0.86
SNX1-210ENST00000560260 FOLH1Q04609 750 aa20.42■□□□□ 0.86
SNX1-210ENST00000560260 CHAF1BQ13112 559 aa20.42■□□□□ 0.86
SNX1-210ENST00000560260 OR52E8Q6IFG1 317 aa20.42■□□□□ 0.86
SNX1-210ENST00000560260 FAM71E1Q6IPT2 247 aa20.42■□□□□ 0.86
SNX1-210ENST00000560260 FNDC5Q8NAU1 212 aa20.42■□□□□ 0.86
SNX1-210ENST00000560260 CLHC1Q8NHS4 586 aa20.42■□□□□ 0.86
SNX1-210ENST00000560260 CDC26Q8NHZ8 85 aa20.42■□□□□ 0.86
SNX1-210ENST00000560260 METTL21AQ8WXB1 218 aa20.42■□□□□ 0.86
SNX1-210ENST00000560260 CCDC134Q9H6E4 229 aa20.42■□□□□ 0.86
SNX1-210ENST00000560260 MYNNQ9NPC7 610 aa20.42■□□□□ 0.86
SNX1-210ENST00000560260 VTI1BQ9UEU0 232 aa20.42■□□□□ 0.86
SNX1-210ENST00000560260 CES1P1Q9UKY3 287 aa20.42■□□□□ 0.86
SNX1-210ENST00000560260 POLHQ9Y253 713 aa20.42■□□□□ 0.86
SNX1-210ENST00000560260 TMED5Q9Y3A6 229 aa20.42■□□□□ 0.86
SNX1-210ENST00000560260 IGHV1-45A0A0A0MS14 117 aa20.41■□□□□ 0.86
SNX1-210ENST00000560260 GOLGA8QA0A0J9YX86 632 aa20.41■□□□□ 0.86
SNX1-210ENST00000560260 BLACEA4D250 179 aa20.41■□□□□ 0.86
SNX1-210ENST00000560260 GOLGA8OA6NCC3 632 aa20.41■□□□□ 0.86
SNX1-210ENST00000560260 ARGFXA6NJG6 315 aa20.41■□□□□ 0.86
SNX1-210ENST00000560260 GOLGA8NF8WBI6 632 aa20.41■□□□□ 0.86
SNX1-210ENST00000560260 SLCO1B7G3V0H7 640 aa20.41■□□□□ 0.86
SNX1-210ENST00000560260 CLDN4O14493 209 aa20.41■□□□□ 0.86
SNX1-210ENST00000560260 MYO1DO94832 1006 aa20.41■□□□□ 0.86
SNX1-210ENST00000560260 ALOX15P16050 662 aaPredicted RBP20.41■□□□□ 0.86
SNX1-210ENST00000560260 EPHA3P29320 983 aa20.41■□□□□ 0.86
SNX1-210ENST00000560260 TLX1P31314 330 aaPredicted RBP20.41■□□□□ 0.86
SNX1-210ENST00000560260 PRSS53Q2L4Q9 553 aa20.41■□□□□ 0.86
SNX1-210ENST00000560260 SFT2D3Q587I9 215 aa20.41■□□□□ 0.86
SNX1-210ENST00000560260 LARP4Q71RC2 724 aaKnown RBP eCLIP20.41■□□□□ 0.86
SNX1-210ENST00000560260 CPEB2Q7Z5Q1 589 aaKnown RBP20.41■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms