RNA–Protein interactions for RNA: ENST00000554264.5

VPS33B-203, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 4

Gene VPS33B, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-203ENST00000554264 DRGXA6NNA5 263 aa5.67□□□□□ -1.5
VPS33B-203ENST00000554264 A8MVJ9 347 aa5.67□□□□□ -1.5
VPS33B-203ENST00000554264 NPIPB8E9PQR5 432 aa5.67□□□□□ -1.5
VPS33B-203ENST00000554264 UPK1AO00322 258 aa5.67□□□□□ -1.5
VPS33B-203ENST00000554264 PRMT5O14744 637 aaPredicted RBP5.67□□□□□ -1.5
VPS33B-203ENST00000554264 BCKDKO14874 412 aa5.67□□□□□ -1.5
VPS33B-203ENST00000554264 RGS10O43665 173 aa5.67□□□□□ -1.5
VPS33B-203ENST00000554264 PRAMEF11O60813 436 aa5.67□□□□□ -1.5
VPS33B-203ENST00000554264 RSL1D1O76021 490 aaKnown RBP5.67□□□□□ -1.5
VPS33B-203ENST00000554264 ANGPTL1O95841 491 aa5.67□□□□□ -1.5
VPS33B-203ENST00000554264 GOT2P00505 430 aaKnown RBP5.67□□□□□ -1.5
VPS33B-203ENST00000554264 APOA1P02647 267 aa5.67□□□□□ -1.5
VPS33B-203ENST00000554264 MMP2P08253 660 aa5.67□□□□□ -1.5
VPS33B-203ENST00000554264 HAPLN1P10915 354 aaPredicted RBP5.67□□□□□ -1.5
VPS33B-203ENST00000554264 MTHFD1P11586 935 aaKnown RBP5.67□□□□□ -1.5
VPS33B-203ENST00000554264 NCF1P14598 390 aaPredicted RBP5.67□□□□□ -1.5
VPS33B-203ENST00000554264 PKMP14618 531 aaKnown RBP5.67□□□□□ -1.5
VPS33B-203ENST00000554264 ARSAP15289 507 aa5.67□□□□□ -1.5
VPS33B-203ENST00000554264 CD1EP15812 388 aa5.67□□□□□ -1.5
VPS33B-203ENST00000554264 ENGP17813 658 aa5.67□□□□□ -1.5
VPS33B-203ENST00000554264 NELFEP18615 380 aaKnown RBP5.67□□□□□ -1.5
VPS33B-203ENST00000554264 ATF6P18850 670 aa5.67□□□□□ -1.5
VPS33B-203ENST00000554264 HDCP19113 662 aa5.67□□□□□ -1.5
VPS33B-203ENST00000554264 BCKDHBP21953 392 aa5.67□□□□□ -1.5
VPS33B-203ENST00000554264 PCMT1P22061 227 aa5.67□□□□□ -1.5
VPS33B-203ENST00000554264 PPIBP23284 216 aaKnown RBP5.67□□□□□ -1.5
VPS33B-203ENST00000554264 RPS3P23396 243 aaKnown RBP eCLIP5.67□□□□□ -1.5
VPS33B-203ENST00000554264 PRPH2P23942 346 aa5.67□□□□□ -1.5
VPS33B-203ENST00000554264 NFKBIAP25963 317 aa5.67□□□□□ -1.5
VPS33B-203ENST00000554264 HPCAL1P37235 193 aa5.67□□□□□ -1.5
VPS33B-203ENST00000554264 OPRL1P41146 370 aa5.67□□□□□ -1.5
VPS33B-203ENST00000554264 MAGEA2P43356 314 aa5.67□□□□□ -1.5
VPS33B-203ENST00000554264 ZFP36L2P47974 494 aaKnown RBP5.67□□□□□ -1.5
VPS33B-203ENST00000554264 PRIM2P49643 509 aa5.67□□□□□ -1.5
VPS33B-203ENST00000554264 MEOX1P50221 254 aa5.67□□□□□ -1.5
VPS33B-203ENST00000554264 ZNF140P52738 457 aaPredicted RBP5.67□□□□□ -1.5
VPS33B-203ENST00000554264 MANFP55145 182 aaKnown RBP5.67□□□□□ -1.5
VPS33B-203ENST00000554264 CDH13P55290 713 aa5.67□□□□□ -1.5
VPS33B-203ENST00000554264 TBX4P57082 545 aa5.67□□□□□ -1.5
VPS33B-203ENST00000554264 COPZ1P61923 177 aa5.67□□□□□ -1.5
VPS33B-203ENST00000554264 PRKCDQ05655 676 aa5.67□□□□□ -1.5
VPS33B-203ENST00000554264 ITKQ08881 620 aa5.67□□□□□ -1.5
VPS33B-203ENST00000554264 ELP6Q0PNE2 266 aa5.67□□□□□ -1.5
VPS33B-203ENST00000554264 DUSP8Q13202 625 aa5.67□□□□□ -1.5
VPS33B-203ENST00000554264 SELPLGQ14242 412 aa5.67□□□□□ -1.5
VPS33B-203ENST00000554264 POLD3Q15054 466 aaPredicted RBP5.67□□□□□ -1.5
VPS33B-203ENST00000554264 SMAD1Q15797 465 aaKnown RBP5.67□□□□□ -1.5
VPS33B-203ENST00000554264 CTF1Q16619 201 aa5.67□□□□□ -1.5
VPS33B-203ENST00000554264 MAPKAPK3Q16644 382 aa5.67□□□□□ -1.5
VPS33B-203ENST00000554264 C5orf22Q49AR2 442 aa5.67□□□□□ -1.5
VPS33B-203ENST00000554264 RABL3Q5HYI8 236 aa5.67□□□□□ -1.5
VPS33B-203ENST00000554264 OTUD3Q5T2D3 398 aaPredicted RBP5.67□□□□□ -1.5
VPS33B-203ENST00000554264 LRIF1Q5T3J3 769 aa5.67□□□□□ -1.5
VPS33B-203ENST00000554264 TCTN3Q6NUS6 607 aa5.67□□□□□ -1.5
VPS33B-203ENST00000554264 TMEM53Q6P2H8 277 aa5.67□□□□□ -1.5
VPS33B-203ENST00000554264 CYP20A1Q6UW02 462 aa5.67□□□□□ -1.5
VPS33B-203ENST00000554264 SLC16A12Q6ZSM3 486 aa5.67□□□□□ -1.5
VPS33B-203ENST00000554264 USP43Q70EL4 1123 aa5.67□□□□□ -1.5
VPS33B-203ENST00000554264 GPRIN1Q7Z2K8 1008 aa5.67□□□□□ -1.5
VPS33B-203ENST00000554264 SNX20Q7Z614 316 aa5.67□□□□□ -1.5
VPS33B-203ENST00000554264 C14orf80Q86SX3 495 aa5.67□□□□□ -1.5
VPS33B-203ENST00000554264 PIP4P1Q86T03 277 aa5.67□□□□□ -1.5
VPS33B-203ENST00000554264 SYVN1Q86TM6 617 aa5.67□□□□□ -1.5
VPS33B-203ENST00000554264 AKAP14Q86UN6 197 aa5.67□□□□□ -1.5
VPS33B-203ENST00000554264 IFNEQ86WN2 208 aa5.67□□□□□ -1.5
VPS33B-203ENST00000554264 ARMC8Q8IUR7 673 aa5.67□□□□□ -1.5
VPS33B-203ENST00000554264 SPATA2LQ8IUW3 424 aaPredicted RBP5.67□□□□□ -1.5
VPS33B-203ENST00000554264 SYT12Q8IV01 421 aa5.67□□□□□ -1.5
VPS33B-203ENST00000554264 PLD3Q8IV08 490 aa5.67□□□□□ -1.5
VPS33B-203ENST00000554264 TCAIMQ8N3R3 496 aa5.67□□□□□ -1.5
VPS33B-203ENST00000554264 SPATA6LQ8N4H0 392 aa5.67□□□□□ -1.5
VPS33B-203ENST00000554264 TTC9BQ8N6N2 239 aa5.67□□□□□ -1.5
VPS33B-203ENST00000554264 ZNF548Q8NEK5 533 aaPredicted RBP5.67□□□□□ -1.5
VPS33B-203ENST00000554264 BPIFB6Q8NFQ5 453 aa5.67□□□□□ -1.5
VPS33B-203ENST00000554264 RHOXF1Q8NHV9 184 aa5.67□□□□□ -1.5
VPS33B-203ENST00000554264 C9orf43Q8TAL5 461 aaPredicted RBP5.67□□□□□ -1.5
VPS33B-203ENST00000554264 CEP76Q8TAP6 659 aa5.67□□□□□ -1.5
VPS33B-203ENST00000554264 ARRDC2Q8TBH0 407 aa5.67□□□□□ -1.5
VPS33B-203ENST00000554264 SETD6Q8TBK2 473 aa5.67□□□□□ -1.5
VPS33B-203ENST00000554264 RASSF5Q8WWW0 418 aa5.67□□□□□ -1.5
VPS33B-203ENST00000554264 NDRG1Q92597 394 aaKnown RBP5.67□□□□□ -1.5
VPS33B-203ENST00000554264 MRPS31Q92665 395 aaKnown RBP5.67□□□□□ -1.5
VPS33B-203ENST00000554264 TANKQ92844 425 aa5.67□□□□□ -1.5
VPS33B-203ENST00000554264 MYDGFQ969H8 173 aa5.67□□□□□ -1.5
VPS33B-203ENST00000554264 FAM162AQ96A26 154 aa5.67□□□□□ -1.5
VPS33B-203ENST00000554264 YIPF6Q96EC8 236 aa5.67□□□□□ -1.5
VPS33B-203ENST00000554264 SLC39A13Q96H72 371 aa5.67□□□□□ -1.5
VPS33B-203ENST00000554264 CDKN2AIPNLQ96HQ2 116 aa5.67□□□□□ -1.5
VPS33B-203ENST00000554264 WWC2-AS2Q96NR7 200 aa5.67□□□□□ -1.5
VPS33B-203ENST00000554264 LMF1Q96S06 567 aa5.67□□□□□ -1.5
VPS33B-203ENST00000554264 SEPHS2Q99611 448 aa5.67□□□□□ -1.5
VPS33B-203ENST00000554264 PKMYT1Q99640 499 aa5.67□□□□□ -1.5
VPS33B-203ENST00000554264 CTRCQ99895 268 aa5.67□□□□□ -1.5
VPS33B-203ENST00000554264 SEMA4BQ9NPR2 832 aaPredicted RBP5.67□□□□□ -1.5
VPS33B-203ENST00000554264 DCAF13Q9NV06 445 aaKnown RBP5.67□□□□□ -1.5
VPS33B-203ENST00000554264 CD274Q9NZQ7 290 aa5.67□□□□□ -1.5
VPS33B-203ENST00000554264 TRPS1Q9UHF7 1281 aa5.67□□□□□ -1.5
VPS33B-203ENST00000554264 INTS6Q9UL03 887 aaKnown RBP5.67□□□□□ -1.5
VPS33B-203ENST00000554264 MMP17Q9ULZ9 603 aa5.67□□□□□ -1.5
VPS33B-203ENST00000554264 ERVK-11Q9UQG0 969 aa5.67□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms