RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 ZDBF2Q9HCK1 2354 aa15.56■□□□□ 0.08
CUX1-213ENST00000549414 BRWD3Q6RI45 1802 aa15.56■□□□□ 0.08
CUX1-213ENST00000549414 SMSP52788 366 aa15.56■□□□□ 0.08
CUX1-213ENST00000549414 DNASE1L3Q13609 305 aa15.56■□□□□ 0.08
CUX1-213ENST00000549414 MLIPQ5VWP3 458 aa15.56■□□□□ 0.08
CUX1-213ENST00000549414 CHRDL2Q6WN34 429 aa15.56■□□□□ 0.08
CUX1-213ENST00000549414 TRIM73Q86UV7 250 aa15.56■□□□□ 0.08
CUX1-213ENST00000549414 PELI3Q8N2H9 469 aa15.56■□□□□ 0.08
CUX1-213ENST00000549414 LMX1AQ8TE12 382 aa15.56■□□□□ 0.08
CUX1-213ENST00000549414 PIP5K1AQ99755 562 aa15.56■□□□□ 0.08
CUX1-213ENST00000549414 GPR174Q9BXC1 333 aa15.56■□□□□ 0.08
CUX1-213ENST00000549414 EHD1Q9H4M9 534 aa15.56■□□□□ 0.08
CUX1-213ENST00000549414 SBF2Q86WG5 1849 aa15.56■□□□□ 0.08
CUX1-213ENST00000549414 PLOD2O00469 737 aa15.56■□□□□ 0.08
CUX1-213ENST00000549414 ARRB1P49407 418 aaPredicted RBP15.56■□□□□ 0.08
CUX1-213ENST00000549414 RAB28P51157 221 aa15.56■□□□□ 0.08
CUX1-213ENST00000549414 CDH11P55287 796 aa15.56■□□□□ 0.08
CUX1-213ENST00000549414 TPTEP56180 551 aa15.56■□□□□ 0.08
CUX1-213ENST00000549414 ST3GAL3Q11203 375 aa15.56■□□□□ 0.08
CUX1-213ENST00000549414 CAMK1Q14012 370 aa15.56■□□□□ 0.08
CUX1-213ENST00000549414 LPAL2Q16609 132 aa15.56■□□□□ 0.08
CUX1-213ENST00000549414 CCSMST1Q4G0I0 132 aa15.56■□□□□ 0.08
CUX1-213ENST00000549414 KHDRBS2Q5VWX1 349 aaKnown RBP15.56■□□□□ 0.08
CUX1-213ENST00000549414 Q8N9G6 341 aaPredicted RBP15.56■□□□□ 0.08
CUX1-213ENST00000549414 ZNF740Q8NDX6 193 aa15.56■□□□□ 0.08
CUX1-213ENST00000549414 DNAJA3Q96EY1 480 aa15.56■□□□□ 0.08
CUX1-213ENST00000549414 GFM1Q96RP9 751 aaKnown RBP15.56■□□□□ 0.08
CUX1-213ENST00000549414 TMEM9Q9P0T7 183 aa15.56■□□□□ 0.08
CUX1-213ENST00000549414 PIAS3Q9Y6X2 628 aa15.56■□□□□ 0.08
CUX1-213ENST00000549414 A0A1B0GTL3 188 aa15.56■□□□□ 0.08
CUX1-213ENST00000549414 ARNTLO00327 626 aa15.56■□□□□ 0.08
CUX1-213ENST00000549414 IDH3BO43837 385 aa15.56■□□□□ 0.08
CUX1-213ENST00000549414 ZNF12P17014 697 aa15.56■□□□□ 0.08
CUX1-213ENST00000549414 SHMT2P34897 504 aa15.56■□□□□ 0.08
CUX1-213ENST00000549414 CLDN2P57739 230 aa15.56■□□□□ 0.08
CUX1-213ENST00000549414 RBBP4Q09028 425 aa15.56■□□□□ 0.08
CUX1-213ENST00000549414 AAK1Q2M2I8 961 aa15.56■□□□□ 0.08
CUX1-213ENST00000549414 EIPR1Q53HC9 387 aa15.56■□□□□ 0.08
CUX1-213ENST00000549414 TPRG1LQ5T0D9 272 aa15.56■□□□□ 0.08
CUX1-213ENST00000549414 ARL9Q6T311 187 aa15.56■□□□□ 0.08
CUX1-213ENST00000549414 DPPA4Q7L190 304 aa15.56■□□□□ 0.08
CUX1-213ENST00000549414 BHLHE41Q9C0J9 482 aaPredicted RBP15.56■□□□□ 0.08
CUX1-213ENST00000549414 MKLN1Q9UL63 735 aa15.56■□□□□ 0.08
CUX1-213ENST00000549414 PCDHGA4Q9Y5G9 962 aa15.56■□□□□ 0.08
CUX1-213ENST00000549414 DOCK3Q8IZD9 2030 aa15.56■□□□□ 0.08
CUX1-213ENST00000549414 FABP12A6NFH5 140 aa15.55■□□□□ 0.08
CUX1-213ENST00000549414 HPRP00739 348 aa15.55■□□□□ 0.08
CUX1-213ENST00000549414 IL1RNP18510 177 aa15.55■□□□□ 0.08
CUX1-213ENST00000549414 IRS1P35568 1242 aa15.55■□□□□ 0.08
CUX1-213ENST00000549414 LSAMPQ13449 338 aa15.55■□□□□ 0.08
CUX1-213ENST00000549414 KLHDC8AQ8IYD2 350 aa15.55■□□□□ 0.08
CUX1-213ENST00000549414 WDR92Q96MX6 357 aa15.55■□□□□ 0.08
CUX1-213ENST00000549414 TMED9Q9BVK6 235 aa15.55■□□□□ 0.08
CUX1-213ENST00000549414 FUNDC2Q9BWH2 189 aa15.55■□□□□ 0.08
CUX1-213ENST00000549414 GSDMCQ9BYG8 508 aa15.55■□□□□ 0.08
CUX1-213ENST00000549414 DCAF13Q9NV06 445 aaKnown RBP15.55■□□□□ 0.08
CUX1-213ENST00000549414 TRIP12Q14669 1992 aaPredicted RBP15.55■□□□□ 0.08
CUX1-213ENST00000549414 C7P10643 843 aa15.55■□□□□ 0.08
CUX1-213ENST00000549414 FOSL2P15408 326 aa15.55■□□□□ 0.08
CUX1-213ENST00000549414 CLK3P49761 638 aaKnown RBP15.55■□□□□ 0.08
CUX1-213ENST00000549414 RAB14P61106 215 aa15.55■□□□□ 0.08
CUX1-213ENST00000549414 CBX3Q13185 183 aa15.55■□□□□ 0.08
CUX1-213ENST00000549414 SLC14A2Q15849 920 aa15.55■□□□□ 0.08
CUX1-213ENST00000549414 HSF5Q4G112 596 aaPredicted RBP15.55■□□□□ 0.08
CUX1-213ENST00000549414 PHF19Q5T6S3 580 aa15.55■□□□□ 0.08
CUX1-213ENST00000549414 TMC8Q8IU68 726 aa15.55■□□□□ 0.08
CUX1-213ENST00000549414 NUP43Q8NFH3 380 aa15.55■□□□□ 0.08
CUX1-213ENST00000549414 OR4K14Q8NGD5 310 aa15.55■□□□□ 0.08
CUX1-213ENST00000549414 C9orf43Q8TAL5 461 aaPredicted RBP15.55■□□□□ 0.08
CUX1-213ENST00000549414 ZFAND2BQ8WV99 257 aa15.55■□□□□ 0.08
CUX1-213ENST00000549414 DZANK1Q9NVP4 752 aa15.55■□□□□ 0.08
CUX1-213ENST00000549414 PHF11Q9UIL8 331 aa15.55■□□□□ 0.08
CUX1-213ENST00000549414 TCRBV21S2A2A0A5A6 115 aa15.55■□□□□ 0.08
CUX1-213ENST00000549414 CNOT1A5YKK6 2376 aaKnown RBP15.55■□□□□ 0.08
CUX1-213ENST00000549414 SAGE2PA6NJ88 616 aa15.55■□□□□ 0.08
CUX1-213ENST00000549414 ZNF821O75541 412 aaPredicted RBP15.55■□□□□ 0.08
CUX1-213ENST00000549414 KRT33AO76009 404 aa15.55■□□□□ 0.08
CUX1-213ENST00000549414 RETP07949 1114 aa15.55■□□□□ 0.08
CUX1-213ENST00000549414 PRKAR1AP10644 381 aa15.55■□□□□ 0.08
CUX1-213ENST00000549414 NDUFAF5Q5TEU4 345 aa15.55■□□□□ 0.08
CUX1-213ENST00000549414 AMIGO1Q86WK6 493 aa15.55■□□□□ 0.08
CUX1-213ENST00000549414 JSRP1Q96MG2 331 aaPredicted RBP15.55■□□□□ 0.08
CUX1-213ENST00000549414 PDFQ9HBH1 243 aa15.55■□□□□ 0.08
CUX1-213ENST00000549414 CDH7Q9ULB5 785 aa15.55■□□□□ 0.08
CUX1-213ENST00000549414 CFL2Q9Y281 166 aa15.55■□□□□ 0.08
CUX1-213ENST00000549414 MAN2B2Q9Y2E5 1009 aa15.55■□□□□ 0.08
CUX1-213ENST00000549414 PCDHGA8Q9Y5G5 932 aa15.55■□□□□ 0.08
CUX1-213ENST00000549414 IQCMA0A1B0GVH7 501 aa15.55■□□□□ 0.08
CUX1-213ENST00000549414 H3BSH0 61 aa15.55■□□□□ 0.08
CUX1-213ENST00000549414 IFI30P13284 250 aa15.55■□□□□ 0.08
CUX1-213ENST00000549414 NTSR1P30989 418 aa15.55■□□□□ 0.08
CUX1-213ENST00000549414 SDC2P34741 201 aa15.55■□□□□ 0.08
CUX1-213ENST00000549414 C10orf62Q5T681 223 aaPredicted RBP15.55■□□□□ 0.08
CUX1-213ENST00000549414 AFMIDQ63HM1 303 aa15.55■□□□□ 0.08
CUX1-213ENST00000549414 TMEM102Q8N9M5 508 aaPredicted RBP15.55■□□□□ 0.08
CUX1-213ENST00000549414 ZFP3Q96NJ6 502 aa15.55■□□□□ 0.08
CUX1-213ENST00000549414 CLMPQ9H6B4 373 aa15.55■□□□□ 0.08
CUX1-213ENST00000549414 IL20RAQ9UHF4 553 aa15.55■□□□□ 0.08
CUX1-213ENST00000549414 ZNF222Q9UK12 451 aa15.55■□□□□ 0.08
CUX1-213ENST00000549414 CLCA3PQ9Y6N3 262 aa15.55■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 59.8 ms