RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 PLA2G15Q8NCC3 412 aa14.33□□□□□ -0.12
USP28-214ENST00000545540 ZNF296Q8WUU4 475 aaPredicted RBP14.33□□□□□ -0.12
USP28-214ENST00000545540 KLK6Q92876 244 aa14.33□□□□□ -0.12
USP28-214ENST00000545540 TMEM19Q96HH6 336 aa14.33□□□□□ -0.12
USP28-214ENST00000545540 TRPC4Q9UBN4 977 aa14.33□□□□□ -0.12
USP28-214ENST00000545540 LZTS3O60299 673 aaPredicted RBP14.32□□□□□ -0.12
USP28-214ENST00000545540 GPR37L1O60883 481 aa14.32□□□□□ -0.12
USP28-214ENST00000545540 IFNW1P05000 195 aa14.32□□□□□ -0.12
USP28-214ENST00000545540 ANXA8P13928 327 aa14.32□□□□□ -0.12
USP28-214ENST00000545540 VIPR2P41587 438 aa14.32□□□□□ -0.12
USP28-214ENST00000545540 CDC42P60953 191 aa14.32□□□□□ -0.12
USP28-214ENST00000545540 HOXC5Q00444 222 aa14.32□□□□□ -0.12
USP28-214ENST00000545540 MLLT1Q03111 559 aaPredicted RBP14.32□□□□□ -0.12
USP28-214ENST00000545540 TARDBPQ13148 414 aaKnown RBP eCLIP14.32□□□□□ -0.127e-8■■□□□ 14.2
USP28-214ENST00000545540 FADDQ13158 208 aa14.32□□□□□ -0.12
USP28-214ENST00000545540 TRIM40Q6P9F5 258 aa14.32□□□□□ -0.12
USP28-214ENST00000545540 ADGRF3Q8IZF5 1079 aa14.32□□□□□ -0.12
USP28-214ENST00000545540 PGBD3Q8N328 593 aa14.32□□□□□ -0.12
USP28-214ENST00000545540 C7orf57Q8NEG2 295 aa14.32□□□□□ -0.12
USP28-214ENST00000545540 GPR151Q8TDV0 419 aa14.32□□□□□ -0.12
USP28-214ENST00000545540 NXPE3Q969Y0 559 aa14.32□□□□□ -0.12
USP28-214ENST00000545540 TBC1D20Q96BZ9 403 aa14.32□□□□□ -0.12
USP28-214ENST00000545540 MRGPRX3Q96LB0 322 aa14.32□□□□□ -0.12
USP28-214ENST00000545540 XKR8Q9H6D3 395 aa14.32□□□□□ -0.12
USP28-214ENST00000545540 SLC23A2Q9UGH3 650 aa14.32□□□□□ -0.12
USP28-214ENST00000545540 TLX2O43763 284 aaPredicted RBP14.32□□□□□ -0.12
USP28-214ENST00000545540 C8orf89P0DMQ9 161 aa14.32□□□□□ -0.12
USP28-214ENST00000545540 XCR1P46094 333 aa14.32□□□□□ -0.12
USP28-214ENST00000545540 CRISP1P54107 249 aa14.32□□□□□ -0.12
USP28-214ENST00000545540 UGT2B15P54855 530 aa14.32□□□□□ -0.12
USP28-214ENST00000545540 DSTNP60981 165 aa14.32□□□□□ -0.12
USP28-214ENST00000545540 SPANXN2Q5MJ10 180 aa14.32□□□□□ -0.12
USP28-214ENST00000545540 LAX1Q8IWV1 398 aa14.32□□□□□ -0.12
USP28-214ENST00000545540 GPR32P1Q8NGA4 272 aa14.32□□□□□ -0.12
USP28-214ENST00000545540 SLC5A11Q8WWX8 675 aa14.32□□□□□ -0.12
USP28-214ENST00000545540 SLC35B4Q969S0 331 aa14.32□□□□□ -0.12
USP28-214ENST00000545540 EHD1Q9H4M9 534 aa14.32□□□□□ -0.12
USP28-214ENST00000545540 WASP42768 502 aa14.32□□□□□ -0.12
USP28-214ENST00000545540 PRLHRP49683 370 aa14.32□□□□□ -0.12
USP28-214ENST00000545540 MAP4K2Q12851 820 aa14.32□□□□□ -0.12
USP28-214ENST00000545540 LRIT3Q3SXY7 679 aa14.32□□□□□ -0.12
USP28-214ENST00000545540 MSANTD1Q6ZTZ1 278 aa14.32□□□□□ -0.12
USP28-214ENST00000545540 GRASPQ7Z6J2 395 aaPredicted RBP14.32□□□□□ -0.12
USP28-214ENST00000545540 NRARPQ7Z6K4 114 aa14.32□□□□□ -0.12
USP28-214ENST00000545540 TECPR1Q7Z6L1 1165 aa14.32□□□□□ -0.12
USP28-214ENST00000545540 SMAD5Q99717 465 aaKnown RBP14.32□□□□□ -0.12
USP28-214ENST00000545540 BARHL1Q9BZE3 327 aa14.32□□□□□ -0.12
USP28-214ENST00000545540 TEX10Q9NXF1 929 aaPredicted RBP14.32□□□□□ -0.12
USP28-214ENST00000545540 TOR4AQ9NXH8 423 aa14.32□□□□□ -0.12
USP28-214ENST00000545540 MALT1Q9UDY8 824 aa14.32□□□□□ -0.12
USP28-214ENST00000545540 KLHL20Q9Y2M5 609 aa14.32□□□□□ -0.12
USP28-214ENST00000545540 LOC105378220A0A1B0GUY1 285 aaPredicted RBP14.31□□□□□ -0.12
USP28-214ENST00000545540 CSF2P04141 144 aa14.31□□□□□ -0.12
USP28-214ENST00000545540 ATXN8OSP0DMR3 200 aa14.31□□□□□ -0.12
USP28-214ENST00000545540 HOXB3P14651 431 aaPredicted RBP14.31□□□□□ -0.12
USP28-214ENST00000545540 SLC6A11P48066 632 aa14.31□□□□□ -0.12
USP28-214ENST00000545540 PTPN5P54829 565 aa14.31□□□□□ -0.12
USP28-214ENST00000545540 ZNF805Q5CZA5 627 aa14.31□□□□□ -0.12
USP28-214ENST00000545540 RSBN1Q5VWQ0 802 aaPredicted RBP14.31□□□□□ -0.12
USP28-214ENST00000545540 ABI3BPQ7Z7G0 1075 aa14.31□□□□□ -0.12
USP28-214ENST00000545540 DTX3Q8N9I9 347 aa14.31□□□□□ -0.12
USP28-214ENST00000545540 PUM2Q8TB72 1066 aaKnown RBP eCLIP14.31□□□□□ -0.12
USP28-214ENST00000545540 JPH3Q8WXH2 748 aaPredicted RBP14.31□□□□□ -0.12
USP28-214ENST00000545540 BRF2Q9HAW0 419 aa14.31□□□□□ -0.12
USP28-214ENST00000545540 ANHXE9PGG2 379 aa14.31□□□□□ -0.12
USP28-214ENST00000545540 NPIPB8E9PQR5 432 aa14.31□□□□□ -0.12
USP28-214ENST00000545540 PLPP1O14494 284 aa14.31□□□□□ -0.12
USP28-214ENST00000545540 PLD2O14939 933 aa14.31□□□□□ -0.12
USP28-214ENST00000545540 SOD1P00441 154 aa14.31□□□□□ -0.12
USP28-214ENST00000545540 ALOX5P09917 674 aa14.31□□□□□ -0.12
USP28-214ENST00000545540 OR12D1P0DN82 309 aa14.31□□□□□ -0.12
USP28-214ENST00000545540 TNFSF8P32971 234 aa14.31□□□□□ -0.12
USP28-214ENST00000545540 FAM71E1Q6IPT2 247 aa14.31□□□□□ -0.12
USP28-214ENST00000545540 GEMIN6Q8WXD5 167 aaKnown RBP14.31□□□□□ -0.12
USP28-214ENST00000545540 ARMC5Q96C12 935 aa14.31□□□□□ -0.12
USP28-214ENST00000545540 SDHCQ99643 169 aaPredicted RBP14.31□□□□□ -0.12
USP28-214ENST00000545540 YIPF2Q9BWQ6 316 aa14.31□□□□□ -0.12
USP28-214ENST00000545540 ASPNQ9BXN1 380 aa14.31□□□□□ -0.12
USP28-214ENST00000545540 NLNQ9BYT8 704 aa14.31□□□□□ -0.12
USP28-214ENST00000545540 KLHL42Q9P2K6 505 aa14.31□□□□□ -0.12
USP28-214ENST00000545540 ENPP4Q9Y6X5 453 aa14.31□□□□□ -0.12
USP28-214ENST00000545540 SYNDIG1LA6NDD5 238 aa14.31□□□□□ -0.12
USP28-214ENST00000545540 UGDHO60701 494 aa14.31□□□□□ -0.12
USP28-214ENST00000545540 MFN2O95140 757 aa14.31□□□□□ -0.12
USP28-214ENST00000545540 CXCL10P02778 98 aa14.31□□□□□ -0.12
USP28-214ENST00000545540 RHOP08100 348 aa14.31□□□□□ -0.12
USP28-214ENST00000545540 MAPK12P53778 367 aa14.31□□□□□ -0.12
USP28-214ENST00000545540 NOGQ13253 232 aa14.31□□□□□ -0.12
USP28-214ENST00000545540 NXPE4Q6UWF7 544 aa14.31□□□□□ -0.12
USP28-214ENST00000545540 B3GLCTQ6Y288 498 aa14.31□□□□□ -0.12
USP28-214ENST00000545540 ANKRD53Q8N9V6 530 aa14.31□□□□□ -0.12
USP28-214ENST00000545540 OR9A1PQ8NGU1 263 aa14.31□□□□□ -0.12
USP28-214ENST00000545540 CEP44Q9C0F1 390 aa14.31□□□□□ -0.12
USP28-214ENST00000545540 BHLHE41Q9C0J9 482 aaPredicted RBP14.31□□□□□ -0.12
USP28-214ENST00000545540 MMP28Q9H239 520 aa14.31□□□□□ -0.12
USP28-214ENST00000545540 ABCB9Q9NP78 766 aa14.31□□□□□ -0.12
USP28-214ENST00000545540 DDX28Q9NUL7 540 aaKnown RBP14.31□□□□□ -0.12
USP28-214ENST00000545540 PCDHGA3Q9Y5H0 932 aa14.31□□□□□ -0.12
USP28-214ENST00000545540 OTOL1A6NHN0 477 aaPredicted RBP14.3□□□□□ -0.12
USP28-214ENST00000545540 TLR4O00206 839 aa14.3□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms