RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 CDH4P55283 916 aa9.06□□□□□ -0.96
CLIP1-214ENST00000540539 EIF4HQ15056 248 aaKnown RBP9.06□□□□□ -0.96
CLIP1-214ENST00000540539 FAM110CQ1W6H9 321 aa9.06□□□□□ -0.96
CLIP1-214ENST00000540539 FAM83EQ2M2I3 478 aa9.06□□□□□ -0.96
CLIP1-214ENST00000540539 DDI2Q5TDH0 399 aa9.06□□□□□ -0.96
CLIP1-214ENST00000540539 AFTPHQ6ULP2 937 aa9.06□□□□□ -0.96
CLIP1-214ENST00000540539 DET1Q7L5Y6 550 aa9.06□□□□□ -0.96
CLIP1-214ENST00000540539 REC114Q7Z4M0 266 aa9.06□□□□□ -0.96
CLIP1-214ENST00000540539 BPIFCQ8NFQ6 507 aa9.06□□□□□ -0.96
CLIP1-214ENST00000540539 ISG20Q96AZ6 181 aaKnown RBP9.06□□□□□ -0.96
CLIP1-214ENST00000540539 KIF12Q96FN5 646 aa9.06□□□□□ -0.96
CLIP1-214ENST00000540539 PEBP4Q96S96 227 aa9.06□□□□□ -0.96
CLIP1-214ENST00000540539 MGLLQ99685 303 aa9.06□□□□□ -0.96
CLIP1-214ENST00000540539 HSD17B14Q9BPX1 270 aa9.06□□□□□ -0.96
CLIP1-214ENST00000540539 C2orf88Q9BSF0 95 aa9.06□□□□□ -0.96
CLIP1-214ENST00000540539 ADAT1Q9BUB4 502 aaKnown RBP9.06□□□□□ -0.96
CLIP1-214ENST00000540539 OPA3Q9H6K4 179 aa9.06□□□□□ -0.96
CLIP1-214ENST00000540539 PPP1R3EQ9H7J1 279 aa9.06□□□□□ -0.96
CLIP1-214ENST00000540539 PDGFCQ9NRA1 345 aa9.06□□□□□ -0.96
CLIP1-214ENST00000540539 DOCK3Q8IZD9 2030 aa9.05□□□□□ -0.96
CLIP1-214ENST00000540539 CLCA1A8K7I4 914 aa9.05□□□□□ -0.96
CLIP1-214ENST00000540539 HMGCRP04035 888 aa9.05□□□□□ -0.96
CLIP1-214ENST00000540539 CXCL2P19875 107 aa9.05□□□□□ -0.96
CLIP1-214ENST00000540539 SLC6A1P30531 599 aa9.05□□□□□ -0.96
CLIP1-214ENST00000540539 LCN1P31025 176 aa9.05□□□□□ -0.96
CLIP1-214ENST00000540539 CD86P42081 329 aa9.05□□□□□ -0.96
CLIP1-214ENST00000540539 MTPNP58546 118 aa9.05□□□□□ -0.96
CLIP1-214ENST00000540539 SKP2Q13309 424 aa9.05□□□□□ -0.96
CLIP1-214ENST00000540539 ZNF460Q14592 562 aa9.05□□□□□ -0.96
CLIP1-214ENST00000540539 SMCO1Q147U7 214 aa9.05□□□□□ -0.96
CLIP1-214ENST00000540539 UGT8Q16880 541 aa9.05□□□□□ -0.96
CLIP1-214ENST00000540539 UAP1L1Q3KQV9 507 aa9.05□□□□□ -0.96
CLIP1-214ENST00000540539 DHRS7BQ6IAN0 325 aaPredicted RBP9.05□□□□□ -0.96
CLIP1-214ENST00000540539 ARHGAP11AQ6P4F7 1023 aa9.05□□□□□ -0.96
CLIP1-214ENST00000540539 CLEC2AQ6UVW9 174 aa9.05□□□□□ -0.96
CLIP1-214ENST00000540539 WASH2PQ6VEQ5 465 aa9.05□□□□□ -0.96
CLIP1-214ENST00000540539 ZNF367Q7RTV3 350 aa9.05□□□□□ -0.96
CLIP1-214ENST00000540539 PDZD9Q8IXQ8 264 aa9.05□□□□□ -0.96
CLIP1-214ENST00000540539 RNF113BQ8IZP6 322 aaKnown RBP9.05□□□□□ -0.96
CLIP1-214ENST00000540539 STK35Q8TDR2 534 aa9.05□□□□□ -0.96
CLIP1-214ENST00000540539 MISP3Q96FF7 219 aa9.05□□□□□ -0.96
CLIP1-214ENST00000540539 TEX37Q96LM6 180 aa9.05□□□□□ -0.96
CLIP1-214ENST00000540539 SERINC2Q96SA4 455 aa9.05□□□□□ -0.96
CLIP1-214ENST00000540539 TAPBPLQ9BX59 468 aa9.05□□□□□ -0.96
CLIP1-214ENST00000540539 TEX12Q9BXU0 123 aa9.05□□□□□ -0.96
CLIP1-214ENST00000540539 PORCNQ9H237 461 aa9.05□□□□□ -0.96
CLIP1-214ENST00000540539 KLHL1Q9NR64 748 aa9.05□□□□□ -0.96
CLIP1-214ENST00000540539 PHF11Q9UIL8 331 aa9.05□□□□□ -0.96
CLIP1-214ENST00000540539 ZNF490Q9ULM2 529 aaPredicted RBP9.05□□□□□ -0.96
CLIP1-214ENST00000540539 STUB1Q9UNE7 303 aa9.05□□□□□ -0.96
CLIP1-214ENST00000540539 LHX6Q9UPM6 363 aa9.05□□□□□ -0.96
CLIP1-214ENST00000540539 ARVCFO00192 962 aa9.05□□□□□ -0.96
CLIP1-214ENST00000540539 UBFD1O14562 309 aaKnown RBP9.05□□□□□ -0.96
CLIP1-214ENST00000540539 SLC22A3O75751 556 aa9.05□□□□□ -0.96
CLIP1-214ENST00000540539 ENDOD1O94919 500 aa9.05□□□□□ -0.96
CLIP1-214ENST00000540539 ARIH2O95376 493 aa9.05□□□□□ -0.96
CLIP1-214ENST00000540539 NUDT7P0C024 238 aa9.05□□□□□ -0.96
CLIP1-214ENST00000540539 ITPKAP23677 461 aa9.05□□□□□ -0.96
CLIP1-214ENST00000540539 ETV5P41161 510 aa9.05□□□□□ -0.96
CLIP1-214ENST00000540539 GCGRP47871 477 aa9.05□□□□□ -0.96
CLIP1-214ENST00000540539 DNAJB13P59910 316 aa9.05□□□□□ -0.96
CLIP1-214ENST00000540539 RAB5BP61020 215 aa9.05□□□□□ -0.96
CLIP1-214ENST00000540539 RCAN2Q14206 197 aa9.05□□□□□ -0.96
CLIP1-214ENST00000540539 MED22Q15528 200 aa9.05□□□□□ -0.96
CLIP1-214ENST00000540539 CCDC85BQ15834 202 aaPredicted RBP9.05□□□□□ -0.96
CLIP1-214ENST00000540539 PLA1AQ53H76 456 aa9.05□□□□□ -0.96
CLIP1-214ENST00000540539 TPGS2Q68CL5 300 aa9.05□□□□□ -0.96
CLIP1-214ENST00000540539 DENND6AQ8IWF6 608 aa9.05□□□□□ -0.96
CLIP1-214ENST00000540539 MEIOBQ8N635 442 aa9.05□□□□□ -0.96
CLIP1-214ENST00000540539 TRPV1Q8NER1 839 aa9.05□□□□□ -0.96
CLIP1-214ENST00000540539 NTAN1Q96AB6 310 aa9.05□□□□□ -0.96
CLIP1-214ENST00000540539 ZNF669Q96BR6 464 aaPredicted RBP9.05□□□□□ -0.96
CLIP1-214ENST00000540539 ELMOD3Q96FG2 381 aa9.05□□□□□ -0.96
CLIP1-214ENST00000540539 PITX2Q99697 317 aa9.05□□□□□ -0.96
CLIP1-214ENST00000540539 TCF25Q9BQ70 676 aa9.05□□□□□ -0.96
CLIP1-214ENST00000540539 GGACTQ9BVM4 153 aa9.05□□□□□ -0.96
CLIP1-214ENST00000540539 TMUB1Q9BVT8 246 aa9.05□□□□□ -0.96
CLIP1-214ENST00000540539 MRPL37Q9BZE1 423 aaKnown RBP9.05□□□□□ -0.96
CLIP1-214ENST00000540539 GPR61Q9BZJ8 451 aa9.05□□□□□ -0.96
CLIP1-214ENST00000540539 EML4Q9HC35 981 aaKnown RBP9.05□□□□□ -0.96
CLIP1-214ENST00000540539 SPASTQ9UBP0 616 aa9.05□□□□□ -0.96
CLIP1-214ENST00000540539 TCEAL9Q9UHQ7 104 aa9.05□□□□□ -0.96
CLIP1-214ENST00000540539 DLGAP4Q9Y2H0 992 aa9.05□□□□□ -0.96
CLIP1-214ENST00000540539 LOC105369274A0A096LPK9 316 aa9.04□□□□□ -0.96
CLIP1-214ENST00000540539 URADA6NGE7 173 aa9.04□□□□□ -0.96
CLIP1-214ENST00000540539 DISC1C4P0D8 188 aa9.04□□□□□ -0.96
CLIP1-214ENST00000540539 ZNF670-ZNF695F2Z2N8 137 aa9.04□□□□□ -0.96
CLIP1-214ENST00000540539 PPEF2O14830 753 aa9.04□□□□□ -0.96
CLIP1-214ENST00000540539 CD3EAPO15446 510 aaKnown RBP9.04□□□□□ -0.96
CLIP1-214ENST00000540539 MSH4O15457 936 aa9.04□□□□□ -0.96
CLIP1-214ENST00000540539 EEDO75530 441 aaKnown RBP9.04□□□□□ -0.96
CLIP1-214ENST00000540539 TRUB2O95900 331 aaKnown RBP9.04□□□□□ -0.96
CLIP1-214ENST00000540539 PGK1P00558 417 aa9.04□□□□□ -0.96
CLIP1-214ENST00000540539 CALCRP30988 508 aa9.04□□□□□ -0.96
CLIP1-214ENST00000540539 RBP2P50120 134 aa9.04□□□□□ -0.96
CLIP1-214ENST00000540539 BEX3Q00994 111 aa9.04□□□□□ -0.96
CLIP1-214ENST00000540539 FABP9Q0Z7S8 132 aa9.04□□□□□ -0.96
CLIP1-214ENST00000540539 POU4F2Q12837 409 aa9.04□□□□□ -0.96
CLIP1-214ENST00000540539 HNRNPA0Q13151 305 aaKnown RBP9.04□□□□□ -0.96
CLIP1-214ENST00000540539 GRIN2CQ14957 1233 aa9.04□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms