RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 GLOD5A6NK44 160 aa19.6■□□□□ 0.73
VPS28-209ENST00000528142 TLR4O00206 839 aa19.6■□□□□ 0.73
VPS28-209ENST00000528142 SLC35G6P0C7Q6 338 aa19.6■□□□□ 0.73
VPS28-209ENST00000528142 ZNF888P0CJ79 500 aaPredicted RBP19.6■□□□□ 0.73
VPS28-209ENST00000528142 PVRP15151 417 aa19.6■□□□□ 0.73
VPS28-209ENST00000528142 DCTP40126 519 aa19.6■□□□□ 0.73
VPS28-209ENST00000528142 VLDLRP98155 873 aa19.6■□□□□ 0.73
VPS28-209ENST00000528142 CDK6Q00534 326 aa19.6■□□□□ 0.73
VPS28-209ENST00000528142 IQCCQ4KMZ1 466 aa19.6■□□□□ 0.73
VPS28-209ENST00000528142 C18orf63Q68DL7 685 aa19.6■□□□□ 0.73
VPS28-209ENST00000528142 PIWIL3Q7Z3Z3 882 aaKnown RBP19.6■□□□□ 0.73
VPS28-209ENST00000528142 ZNF761Q86XN6 746 aaPredicted RBP19.6■□□□□ 0.73
VPS28-209ENST00000528142 OR5K1Q8NHB7 308 aa19.6■□□□□ 0.73
VPS28-209ENST00000528142 ZNF696Q9H7X3 374 aa19.6■□□□□ 0.73
VPS28-209ENST00000528142 ADPRHL2Q9NX46 363 aa19.6■□□□□ 0.73
VPS28-209ENST00000528142 LYARQ9NX58 379 aaKnown RBP19.6■□□□□ 0.73
VPS28-209ENST00000528142 ARHGEF17Q96PE2 2063 aaPredicted RBP19.6■□□□□ 0.73
VPS28-209ENST00000528142 LOC105369274A0A096LPK9 316 aa19.6■□□□□ 0.73
VPS28-209ENST00000528142 LOC102723532A0A0G2JNH3 316 aa19.6■□□□□ 0.73
VPS28-209ENST00000528142 A0A0J9YY10 115 aa19.6■□□□□ 0.73
VPS28-209ENST00000528142 OR5K3A6NET4 321 aa19.6■□□□□ 0.73
VPS28-209ENST00000528142 MYO1GB0I1T2 1018 aa19.6■□□□□ 0.73
VPS28-209ENST00000528142 SUV39H1O43463 412 aa19.6■□□□□ 0.73
VPS28-209ENST00000528142 NOBOXO60393 691 aa19.6■□□□□ 0.73
VPS28-209ENST00000528142 PRAMEF10O60809 474 aa19.6■□□□□ 0.73
VPS28-209ENST00000528142 SNAP29O95721 258 aa19.6■□□□□ 0.73
VPS28-209ENST00000528142 HPRP00739 348 aa19.6■□□□□ 0.73
VPS28-209ENST00000528142 PDGFBP01127 241 aaPredicted RBP19.6■□□□□ 0.73
VPS28-209ENST00000528142 FABP3P05413 133 aa19.6■□□□□ 0.73
VPS28-209ENST00000528142 DSTNP60981 165 aa19.6■□□□□ 0.73
VPS28-209ENST00000528142 KCNJ10P78508 379 aa19.6■□□□□ 0.73
VPS28-209ENST00000528142 RPL6Q02878 288 aaKnown RBP19.6■□□□□ 0.73
VPS28-209ENST00000528142 ELOAQ14241 798 aaKnown RBP19.6■□□□□ 0.73
VPS28-209ENST00000528142 SLC48A1Q6P1K1 146 aa19.6■□□□□ 0.73
VPS28-209ENST00000528142 C6orf120Q7Z4R8 191 aa19.6■□□□□ 0.73
VPS28-209ENST00000528142 OR4N4Q8N0Y3 316 aa19.6■□□□□ 0.73
VPS28-209ENST00000528142 C1orf216Q8TAB5 229 aa19.6■□□□□ 0.73
VPS28-209ENST00000528142 MAPKAP1Q9BPZ7 522 aa19.6■□□□□ 0.73
VPS28-209ENST00000528142 ZFYVE21Q9BQ24 234 aa19.6■□□□□ 0.73
VPS28-209ENST00000528142 DOHHQ9BU89 302 aa19.6■□□□□ 0.73
VPS28-209ENST00000528142 OSBPL10Q9BXB5 764 aa19.6■□□□□ 0.73
VPS28-209ENST00000528142 VNN3Q9NY84 501 aa19.6■□□□□ 0.73
VPS28-209ENST00000528142 B4DGG1 531 aa19.59■□□□□ 0.73
VPS28-209ENST00000528142 VILLO15195 856 aa19.59■□□□□ 0.73
VPS28-209ENST00000528142 GNAO1P09471 354 aa19.59■□□□□ 0.73
VPS28-209ENST00000528142 MYF6P23409 242 aa19.59■□□□□ 0.73
VPS28-209ENST00000528142 PCBP3P57721 371 aaKnown RBP19.59■□□□□ 0.73
VPS28-209ENST00000528142 SELENOWP63302 87 aa19.59■□□□□ 0.73
VPS28-209ENST00000528142 PPP2R2BQ00005 443 aa19.59■□□□□ 0.73
VPS28-209ENST00000528142 ELOCQ15369 112 aa19.59■□□□□ 0.73
VPS28-209ENST00000528142 CRB2Q5IJ48 1285 aa19.59■□□□□ 0.73
VPS28-209ENST00000528142 FRMPD2BQ6IN97 320 aa19.59■□□□□ 0.73
VPS28-209ENST00000528142 ZC3H7AQ8IWR0 971 aaKnown RBP19.59■□□□□ 0.73
VPS28-209ENST00000528142 HS3ST5Q8IZT8 346 aa19.59■□□□□ 0.73
VPS28-209ENST00000528142 DHRSXQ8N5I4 330 aa19.59■□□□□ 0.73
VPS28-209ENST00000528142 HORMAD2Q8N7B1 307 aa19.59■□□□□ 0.73
VPS28-209ENST00000528142 CNRIP1Q96F85 164 aaPredicted RBP19.59■□□□□ 0.73
VPS28-209ENST00000528142 C7orf34Q96L11 122 aa19.59■□□□□ 0.73
VPS28-209ENST00000528142 TM9SF3Q9HD45 589 aa19.59■□□□□ 0.73
VPS28-209ENST00000528142 USE1Q9NZ43 259 aa19.59■□□□□ 0.73
VPS28-209ENST00000528142 PADI4Q9UM07 663 aa19.59■□□□□ 0.73
VPS28-209ENST00000528142 TNFAIP8O95379 198 aa19.58■□□□□ 0.73
VPS28-209ENST00000528142 DCNP07585 359 aaKnown RBP19.58■□□□□ 0.73
VPS28-209ENST00000528142 SMIM18P0DKX4 95 aa19.58■□□□□ 0.73
VPS28-209ENST00000528142 CAPGP40121 348 aa19.58■□□□□ 0.73
VPS28-209ENST00000528142 CCT3P49368 545 aaKnown RBP19.58■□□□□ 0.73
VPS28-209ENST00000528142 PPP1CAP62136 330 aa19.58■□□□□ 0.73
VPS28-209ENST00000528142 RPS26P62854 115 aaKnown RBP19.58■□□□□ 0.73
VPS28-209ENST00000528142 ADARB1P78563 741 aaKnown RBP19.58■□□□□ 0.73
VPS28-209ENST00000528142 PPP1R8Q12972 351 aaKnown RBP19.58■□□□□ 0.73
VPS28-209ENST00000528142 BIRC2Q13490 618 aa19.58■□□□□ 0.73
VPS28-209ENST00000528142 CHCHD2P9Q5T1J5 151 aaPredicted RBP19.58■□□□□ 0.73
VPS28-209ENST00000528142 OR2T5Q6IEZ7 315 aa19.58■□□□□ 0.73
VPS28-209ENST00000528142 CEACAM20Q6UY09 585 aa19.58■□□□□ 0.73
VPS28-209ENST00000528142 RNF44Q7L0R7 432 aa19.58■□□□□ 0.73
VPS28-209ENST00000528142 OOSP2Q86WS3 158 aa19.58■□□□□ 0.73
VPS28-209ENST00000528142 ST13P4Q8IZP2 240 aaPredicted RBP19.58■□□□□ 0.73
VPS28-209ENST00000528142 OR2T29Q8NH02 315 aa19.58■□□□□ 0.73
VPS28-209ENST00000528142 SUN3Q8TAQ9 357 aa19.58■□□□□ 0.73
VPS28-209ENST00000528142 TAMM41Q96BW9 452 aa19.58■□□□□ 0.73
VPS28-209ENST00000528142 SDCCAG3Q96C92 435 aa19.58■□□□□ 0.73
VPS28-209ENST00000528142 TPD52L3Q96J77 140 aa19.58■□□□□ 0.73
VPS28-209ENST00000528142 ROGDIQ9GZN7 287 aa19.58■□□□□ 0.73
VPS28-209ENST00000528142 MUC3AQ02505 3323 aa19.58■□□□□ 0.73
VPS28-209ENST00000528142 H0YGG7 62 aa19.58■□□□□ 0.72
VPS28-209ENST00000528142 hCG_2039718K7EN88 272 aa19.58■□□□□ 0.72
VPS28-209ENST00000528142 SH3BP5O60239 455 aa19.58■□□□□ 0.72
VPS28-209ENST00000528142 NTSP30990 170 aa19.58■□□□□ 0.72
VPS28-209ENST00000528142 NCBP2P52298 156 aaKnown RBP eCLIP19.58■□□□□ 0.725e-6■■□□□ 11.5
VPS28-209ENST00000528142 MAZP56270 477 aaKnown RBP19.58■□□□□ 0.72
VPS28-209ENST00000528142 ARF3P61204 181 aaPredicted RBP19.58■□□□□ 0.72
VPS28-209ENST00000528142 CEBPEQ15744 281 aa19.58■□□□□ 0.72
VPS28-209ENST00000528142 SPDYE7PQ495Y7 208 aa19.58■□□□□ 0.72
VPS28-209ENST00000528142 ISLR2Q6UXK2 745 aa19.58■□□□□ 0.72
VPS28-209ENST00000528142 ZNF438Q7Z4V0 828 aa19.58■□□□□ 0.72
VPS28-209ENST00000528142 SLC30A8Q8IWU4 369 aa19.58■□□□□ 0.72
VPS28-209ENST00000528142 CAMKVQ8NCB2 501 aa19.58■□□□□ 0.72
VPS28-209ENST00000528142 KLHL6Q8WZ60 621 aa19.58■□□□□ 0.72
VPS28-209ENST00000528142 RSC1A1Q92681 617 aa19.58■□□□□ 0.72
VPS28-209ENST00000528142 HSPA12BQ96MM6 686 aa19.58■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms