RNA–Protein interactions for RNA: ENST00000527326.1

CD44-225, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 718 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-225ENST00000527326 ZNF559Q9BR84 538 aa5.57□□□□□ -1.52
CD44-225ENST00000527326 C11orf70Q9BRQ4 267 aa5.57□□□□□ -1.52
CD44-225ENST00000527326 CHCHD6Q9BRQ6 235 aa5.57□□□□□ -1.52
CD44-225ENST00000527326 TRMOQ9BU70 441 aa5.57□□□□□ -1.52
CD44-225ENST00000527326 KATNB1Q9BVA0 655 aa5.57□□□□□ -1.52
CD44-225ENST00000527326 TMPRSS13Q9BYE2 586 aa5.57□□□□□ -1.52
CD44-225ENST00000527326 ZDHHC5Q9C0B5 715 aa5.57□□□□□ -1.52
CD44-225ENST00000527326 BHLHE41Q9C0J9 482 aaPredicted RBP5.57□□□□□ -1.52
CD44-225ENST00000527326 ACTR6Q9GZN1 396 aa5.57□□□□□ -1.52
CD44-225ENST00000527326 MCOLN1Q9GZU1 580 aa5.57□□□□□ -1.52
CD44-225ENST00000527326 XRN2Q9H0D6 950 aaKnown RBP eCLIP5.57□□□□□ -1.52
CD44-225ENST00000527326 OR51E2Q9H255 320 aa5.57□□□□□ -1.52
CD44-225ENST00000527326 RHBGQ9H310 441 aa5.57□□□□□ -1.52
CD44-225ENST00000527326 MAGIXQ9H6Y5 334 aa5.57□□□□□ -1.52
CD44-225ENST00000527326 RNF122Q9H9V4 155 aa5.57□□□□□ -1.52
CD44-225ENST00000527326 GPRC5CQ9NQ84 441 aa5.57□□□□□ -1.52
CD44-225ENST00000527326 SEMA3GQ9NS98 782 aa5.57□□□□□ -1.52
CD44-225ENST00000527326 ZFP57Q9NU63 452 aa5.57□□□□□ -1.52
CD44-225ENST00000527326 TMEM260Q9NX78 707 aa5.57□□□□□ -1.52
CD44-225ENST00000527326 GFOD1Q9NXC2 390 aa5.57□□□□□ -1.52
CD44-225ENST00000527326 GTSE1Q9NYZ3 720 aa5.57□□□□□ -1.52
CD44-225ENST00000527326 ZNF69Q9UC07 566 aa5.57□□□□□ -1.52
CD44-225ENST00000527326 SH3BGRL2Q9UJC5 107 aa5.57□□□□□ -1.52
CD44-225ENST00000527326 ING1Q9UK53 422 aaPredicted RBP5.57□□□□□ -1.52
CD44-225ENST00000527326 FBXL2Q9UKC9 423 aa5.57□□□□□ -1.52
CD44-225ENST00000527326 PADI2Q9Y2J8 665 aa5.57□□□□□ -1.52
CD44-225ENST00000527326 MRPL42Q9Y6G3 142 aaKnown RBP5.57□□□□□ -1.52
CD44-225ENST00000527326 CDH10Q9Y6N8 788 aa5.57□□□□□ -1.52
CD44-225ENST00000527326 RGPD2P0DJD1 1756 aa5.57□□□□□ -1.52
CD44-225ENST00000527326 DOT1LQ8TEK3 1739 aa5.57□□□□□ -1.52
CD44-225ENST00000527326 TNRC6CQ9HCJ0 1690 aaKnown RBP5.56□□□□□ -1.52
CD44-225ENST00000527326 BCLAF3A2AJT9 711 aaKnown RBP5.56□□□□□ -1.52
CD44-225ENST00000527326 METTL12A8MUP2 240 aa5.56□□□□□ -1.52
CD44-225ENST00000527326 M0QYV0 167 aa5.56□□□□□ -1.52
CD44-225ENST00000527326 ARVCFO00192 962 aa5.56□□□□□ -1.52
CD44-225ENST00000527326 LGALS8O00214 317 aa5.56□□□□□ -1.52
CD44-225ENST00000527326 GPR171O14626 319 aa5.56□□□□□ -1.52
CD44-225ENST00000527326 ADAMDEC1O15204 470 aa5.56□□□□□ -1.52
CD44-225ENST00000527326 PRKYO43930 277 aa5.56□□□□□ -1.52
CD44-225ENST00000527326 NOBOXO60393 691 aa5.56□□□□□ -1.52
CD44-225ENST00000527326 CIDEAO60543 219 aa5.56□□□□□ -1.52
CD44-225ENST00000527326 NBNO60934 754 aa5.56□□□□□ -1.52
CD44-225ENST00000527326 SDC3O75056 442 aa5.56□□□□□ -1.52
CD44-225ENST00000527326 VPS4BO75351 444 aa5.56□□□□□ -1.52
CD44-225ENST00000527326 RECQL4O94761 1208 aa5.56□□□□□ -1.52
CD44-225ENST00000527326 UBXN7O94888 489 aa5.56□□□□□ -1.52
CD44-225ENST00000527326 PLGP00747 810 aaPredicted RBP5.56□□□□□ -1.52
CD44-225ENST00000527326 PF4P02776 101 aa5.56□□□□□ -1.52
CD44-225ENST00000527326 LTFP02788 710 aa5.56□□□□□ -1.52
CD44-225ENST00000527326 CELA3AP09093 270 aa5.56□□□□□ -1.52
CD44-225ENST00000527326 SLC2A1P11166 492 aa5.56□□□□□ -1.52
CD44-225ENST00000527326 DRD2P14416 443 aa5.56□□□□□ -1.52
CD44-225ENST00000527326 ANXA7P20073 488 aaKnown RBP5.56□□□□□ -1.52
CD44-225ENST00000527326 HRH2P25021 359 aa5.56□□□□□ -1.52
CD44-225ENST00000527326 HOXC12P31275 282 aa5.56□□□□□ -1.52
CD44-225ENST00000527326 SDC2P34741 201 aa5.56□□□□□ -1.52
CD44-225ENST00000527326 GNALP38405 381 aa5.56□□□□□ -1.52
CD44-225ENST00000527326 MMP12P39900 470 aa5.56□□□□□ -1.52
CD44-225ENST00000527326 DCTP40126 519 aa5.56□□□□□ -1.52
CD44-225ENST00000527326 NAGLUP54802 743 aa5.56□□□□□ -1.52
CD44-225ENST00000527326 SNRPEP62304 92 aaKnown RBP5.56□□□□□ -1.52
CD44-225ENST00000527326 DYNLT1P63172 113 aa5.56□□□□□ -1.52
CD44-225ENST00000527326 MAP4K2Q12851 820 aa5.56□□□□□ -1.52
CD44-225ENST00000527326 CAMK2DQ13557 499 aa5.56□□□□□ -1.52
CD44-225ENST00000527326 TDGQ13569 410 aa5.56□□□□□ -1.52
CD44-225ENST00000527326 CUL2Q13617 745 aa5.56□□□□□ -1.52
CD44-225ENST00000527326 MXD4Q14582 209 aaPredicted RBP5.56□□□□□ -1.52
CD44-225ENST00000527326 IRF4Q15306 451 aa5.56□□□□□ -1.52
CD44-225ENST00000527326 SNAPC1Q16533 368 aa5.56□□□□□ -1.52
CD44-225ENST00000527326 FSCN1Q16658 493 aaKnown RBP5.56□□□□□ -1.52
CD44-225ENST00000527326 SLC35G1Q2M3R5 365 aa5.56□□□□□ -1.52
CD44-225ENST00000527326 SV2CQ496J9 727 aa5.56□□□□□ -1.52
CD44-225ENST00000527326 PYCR3Q53H96 274 aa5.56□□□□□ -1.52
CD44-225ENST00000527326 PPM1JQ5JR12 505 aa5.56□□□□□ -1.52
CD44-225ENST00000527326 SPANXN3Q5MJ09 141 aa5.56□□□□□ -1.52
CD44-225ENST00000527326 EXOSC6Q5RKV6 272 aaKnown RBP5.56□□□□□ -1.52
CD44-225ENST00000527326 PRAMEF19Q5SWL8 479 aa5.56□□□□□ -1.52
CD44-225ENST00000527326 HACD4Q5VWC8 232 aa5.56□□□□□ -1.52
CD44-225ENST00000527326 LIPJQ5W064 366 aa5.56□□□□□ -1.52
CD44-225ENST00000527326 ANKS6Q68DC2 871 aa5.56□□□□□ -1.52
CD44-225ENST00000527326 LIN54Q6MZP7 749 aa5.56□□□□□ -1.52
CD44-225ENST00000527326 DNAJC24Q6P3W2 148 aa5.56□□□□□ -1.52
CD44-225ENST00000527326 SPESP1Q6UW49 350 aa5.56□□□□□ -1.52
CD44-225ENST00000527326 WASH2PQ6VEQ5 465 aa5.56□□□□□ -1.52
CD44-225ENST00000527326 NPSR1Q6W5P4 371 aa5.56□□□□□ -1.52
CD44-225ENST00000527326 TMPRSS11FQ6ZWK6 438 aa5.56□□□□□ -1.52
CD44-225ENST00000527326 AHSA2Q719I0 299 aa5.56□□□□□ -1.52
CD44-225ENST00000527326 ZNF720Q7Z2F6 126 aa5.56□□□□□ -1.52
CD44-225ENST00000527326 FGD2Q7Z6J4 655 aa5.56□□□□□ -1.52
CD44-225ENST00000527326 KIAA0907Q7Z7F0 614 aaPredicted RBP5.56□□□□□ -1.52
CD44-225ENST00000527326 LAX1Q8IWV1 398 aa5.56□□□□□ -1.52
CD44-225ENST00000527326 TAB3Q8N5C8 712 aaPredicted RBP5.56□□□□□ -1.52
CD44-225ENST00000527326 SLC24A4Q8NFF2 622 aa5.56□□□□□ -1.52
CD44-225ENST00000527326 DNERQ8NFT8 737 aa5.56□□□□□ -1.52
CD44-225ENST00000527326 OR11H4Q8NGC9 324 aa5.56□□□□□ -1.52
CD44-225ENST00000527326 OR52E4Q8NGH9 312 aa5.56□□□□□ -1.52
CD44-225ENST00000527326 ST7LQ8TDW4 575 aa5.56□□□□□ -1.52
CD44-225ENST00000527326 DTD1Q8TEA8 209 aa5.56□□□□□ -1.52
CD44-225ENST00000527326 STYXQ8WUJ0 223 aa5.56□□□□□ -1.52
CD44-225ENST00000527326 SDR42E1Q8WUS8 393 aa5.56□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms