RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 CLN6Q9NWW5 311 aa11.53□□□□□ -0.56
LIMCH1-213ENST00000511496 SEC14L3Q9UDX4 400 aa11.53□□□□□ -0.56
LIMCH1-213ENST00000511496 PHF11Q9UIL8 331 aa11.53□□□□□ -0.56
LIMCH1-213ENST00000511496 SPIN1Q9Y657 262 aaPredicted RBP11.53□□□□□ -0.56
LIMCH1-213ENST00000511496 C7orf66A4D0T2 115 aa11.53□□□□□ -0.56
LIMCH1-213ENST00000511496 EEF1E1O43324 174 aaKnown RBP11.53□□□□□ -0.56
LIMCH1-213ENST00000511496 NFICP08651 508 aa11.53□□□□□ -0.56
LIMCH1-213ENST00000511496 ADORA2BP29275 332 aa11.53□□□□□ -0.56
LIMCH1-213ENST00000511496 POU3F4P49335 361 aa11.53□□□□□ -0.56
LIMCH1-213ENST00000511496 CLDN8P56748 225 aa11.53□□□□□ -0.56
LIMCH1-213ENST00000511496 RELQ04864 619 aaPredicted RBP11.53□□□□□ -0.56
LIMCH1-213ENST00000511496 MPPE1Q53F39 396 aa11.53□□□□□ -0.56
LIMCH1-213ENST00000511496 SGO1Q5FBB7 561 aa11.53□□□□□ -0.56
LIMCH1-213ENST00000511496 DOK6Q6PKX4 331 aa11.53□□□□□ -0.56
LIMCH1-213ENST00000511496 RANBP10Q6VN20 620 aa11.53□□□□□ -0.56
LIMCH1-213ENST00000511496 C1orf127Q8N9H9 656 aa11.53□□□□□ -0.56
LIMCH1-213ENST00000511496 DENND6BQ8NEG7 585 aa11.53□□□□□ -0.56
LIMCH1-213ENST00000511496 OR52B6Q8NGF0 335 aa11.53□□□□□ -0.56
LIMCH1-213ENST00000511496 KCNJ9Q92806 393 aa11.53□□□□□ -0.56
LIMCH1-213ENST00000511496 ARHGAP39Q9C0H5 1083 aa11.53□□□□□ -0.56
LIMCH1-213ENST00000511496 C8orf33Q9H7E9 229 aaPredicted RBP11.53□□□□□ -0.56
LIMCH1-213ENST00000511496 NFKBIL1Q9UBC1 381 aaPredicted RBP11.53□□□□□ -0.56
LIMCH1-213ENST00000511496 EXTL2Q9UBQ6 330 aa11.53□□□□□ -0.56
LIMCH1-213ENST00000511496 TNFRSF11BO00300 401 aa11.53□□□□□ -0.56
LIMCH1-213ENST00000511496 CCR6P51684 374 aa11.53□□□□□ -0.56
LIMCH1-213ENST00000511496 AKR1C2P52895 323 aa11.53□□□□□ -0.56
LIMCH1-213ENST00000511496 AKR1C1Q04828 323 aa11.53□□□□□ -0.56
LIMCH1-213ENST00000511496 MELKQ14680 651 aa11.53□□□□□ -0.56
LIMCH1-213ENST00000511496 MRPL10Q7Z7H8 261 aaKnown RBP11.53□□□□□ -0.56
LIMCH1-213ENST00000511496 DDX53Q86TM3 631 aaKnown RBP11.53□□□□□ -0.56
LIMCH1-213ENST00000511496 BMPERQ8N8U9 685 aa11.53□□□□□ -0.56
LIMCH1-213ENST00000511496 FAM167AQ96KS9 214 aa11.53□□□□□ -0.56
LIMCH1-213ENST00000511496 OR2M2Q96R28 347 aa11.53□□□□□ -0.56
LIMCH1-213ENST00000511496 THAP7Q9BT49 309 aaPredicted RBP11.53□□□□□ -0.56
LIMCH1-213ENST00000511496 NT5C1AQ9BXI3 368 aa11.53□□□□□ -0.56
LIMCH1-213ENST00000511496 DPAGT1Q9H3H5 408 aa11.53□□□□□ -0.56
LIMCH1-213ENST00000511496 DNAJC27Q9NZQ0 273 aa11.53□□□□□ -0.56
LIMCH1-213ENST00000511496 ZMYM5Q9UJ78 669 aa11.53□□□□□ -0.56
LIMCH1-213ENST00000511496 LHX6Q9UPM6 363 aa11.53□□□□□ -0.56
LIMCH1-213ENST00000511496 OR6C68A6NDL8 312 aa11.52□□□□□ -0.57
LIMCH1-213ENST00000511496 SULT1C2O00338 296 aa11.52□□□□□ -0.57
LIMCH1-213ENST00000511496 TCRBP04435 133 aa11.52□□□□□ -0.57
LIMCH1-213ENST00000511496 TNFRSF1BP20333 461 aa11.52□□□□□ -0.57
LIMCH1-213ENST00000511496 ITGB7P26010 798 aa11.52□□□□□ -0.57
LIMCH1-213ENST00000511496 BDKRB1P46663 353 aa11.52□□□□□ -0.57
LIMCH1-213ENST00000511496 PCP4P48539 62 aa11.52□□□□□ -0.57
LIMCH1-213ENST00000511496 NUBP1P53384 320 aa11.52□□□□□ -0.57
LIMCH1-213ENST00000511496 TPI1P60174 286 aa11.52□□□□□ -0.57
LIMCH1-213ENST00000511496 NFKB2Q00653 900 aa11.52□□□□□ -0.57
LIMCH1-213ENST00000511496 SMCO1Q147U7 214 aa11.52□□□□□ -0.57
LIMCH1-213ENST00000511496 OR2B11Q5JQS5 317 aa11.52□□□□□ -0.57
LIMCH1-213ENST00000511496 ACER2Q5QJU3 275 aa11.52□□□□□ -0.57
LIMCH1-213ENST00000511496 BPIFCQ8NFQ6 507 aa11.52□□□□□ -0.57
LIMCH1-213ENST00000511496 OR10G2Q8NGC3 310 aa11.52□□□□□ -0.57
LIMCH1-213ENST00000511496 OR1S1Q8NH92 325 aa11.52□□□□□ -0.57
LIMCH1-213ENST00000511496 SPPL2AQ8TCT8 520 aa11.52□□□□□ -0.57
LIMCH1-213ENST00000511496 SCARB1Q8WTV0 552 aa11.52□□□□□ -0.57
LIMCH1-213ENST00000511496 PIH1D2Q8WWB5 315 aa11.52□□□□□ -0.57
LIMCH1-213ENST00000511496 GLOD4Q9HC38 313 aa11.52□□□□□ -0.57
LIMCH1-213ENST00000511496 ZNF334Q9HCZ1 680 aaPredicted RBP11.52□□□□□ -0.57
LIMCH1-213ENST00000511496 EQTNQ9NQ60 294 aa11.52□□□□□ -0.57
LIMCH1-213ENST00000511496 ENAMQ9NRM1 1142 aa11.52□□□□□ -0.57
LIMCH1-213ENST00000511496 SH3BP4Q9P0V3 963 aa11.52□□□□□ -0.57
LIMCH1-213ENST00000511496 FAM50BQ9Y247 325 aa11.52□□□□□ -0.57
LIMCH1-213ENST00000511496 PAPPAQ13219 1627 aa11.52□□□□□ -0.57
LIMCH1-213ENST00000511496 A0A1B0GTQ1 180 aa11.52□□□□□ -0.57
LIMCH1-213ENST00000511496 PRR23D1E9PI22 279 aaPredicted RBP11.52□□□□□ -0.57
LIMCH1-213ENST00000511496 M0QYT0 321 aa11.52□□□□□ -0.57
LIMCH1-213ENST00000511496 AKR7A3O95154 331 aa11.52□□□□□ -0.57
LIMCH1-213ENST00000511496 CCNDBP1O95273 360 aa11.52□□□□□ -0.57
LIMCH1-213ENST00000511496 PRR23D2P0DMB1 279 aaPredicted RBP11.52□□□□□ -0.57
LIMCH1-213ENST00000511496 CBSLP0DN79 551 aa11.52□□□□□ -0.57
LIMCH1-213ENST00000511496 PRF1P14222 555 aa11.52□□□□□ -0.57
LIMCH1-213ENST00000511496 PAICSP22234 425 aaKnown RBP11.52□□□□□ -0.57
LIMCH1-213ENST00000511496 CBSP35520 551 aa11.52□□□□□ -0.57
LIMCH1-213ENST00000511496 RIDAP52758 137 aaKnown RBP11.52□□□□□ -0.57
LIMCH1-213ENST00000511496 RABGGTBP53611 331 aa11.52□□□□□ -0.57
LIMCH1-213ENST00000511496 CDC42P60953 191 aa11.52□□□□□ -0.57
LIMCH1-213ENST00000511496 C1DQ13901 141 aaKnown RBP11.52□□□□□ -0.57
LIMCH1-213ENST00000511496 RAET1GQ6H3X3 334 aa11.52□□□□□ -0.57
LIMCH1-213ENST00000511496 BCDIN3DQ7Z5W3 292 aaKnown RBP11.52□□□□□ -0.57
LIMCH1-213ENST00000511496 MDGA1Q8NFP4 955 aa11.52□□□□□ -0.57
LIMCH1-213ENST00000511496 PIGKQ92643 395 aa11.52□□□□□ -0.57
LIMCH1-213ENST00000511496 KLRG1Q96E93 195 aa11.52□□□□□ -0.57
LIMCH1-213ENST00000511496 INPP5KQ9BT40 448 aa11.52□□□□□ -0.57
LIMCH1-213ENST00000511496 GABARAPL3Q9BY60 117 aa11.52□□□□□ -0.57
LIMCH1-213ENST00000511496 NXF3Q9H4D5 531 aaKnown RBP11.52□□□□□ -0.57
LIMCH1-213ENST00000511496 RNF19AQ9NV58 838 aa11.52□□□□□ -0.57
LIMCH1-213ENST00000511496 CFAP97Q9P2B7 532 aa11.52□□□□□ -0.57
LIMCH1-213ENST00000511496 SNX10Q9Y5X0 201 aa11.52□□□□□ -0.57
LIMCH1-213ENST00000511496 SGK494L7N484 410 aa11.51□□□□□ -0.57
LIMCH1-213ENST00000511496 ADAM12O43184 909 aa11.51□□□□□ -0.57
LIMCH1-213ENST00000511496 TPST2O60704 377 aa11.51□□□□□ -0.57
LIMCH1-213ENST00000511496 ENTPD6O75354 484 aa11.51□□□□□ -0.57
LIMCH1-213ENST00000511496 LGI1O95970 557 aa11.51□□□□□ -0.57
LIMCH1-213ENST00000511496 RECKO95980 971 aa11.51□□□□□ -0.57
LIMCH1-213ENST00000511496 TFP02787 698 aa11.51□□□□□ -0.57
LIMCH1-213ENST00000511496 TXNP10599 105 aaKnown RBP11.51□□□□□ -0.57
LIMCH1-213ENST00000511496 TM4SF1P30408 202 aa11.51□□□□□ -0.57
LIMCH1-213ENST00000511496 RAB33AQ14088 237 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms