RNA–Protein interactions for RNA: ENST00000489108.1

USP48-210, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2

Gene USP48, Length 443 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-210ENST00000489108 CAPN12Q6ZSI9 719 aa14.88□□□□□ -0.03
USP48-210ENST00000489108 LRRC75A-AS1Q8N1F1 130 aa14.88□□□□□ -0.03
USP48-210ENST00000489108 LRRC25Q8N386 305 aaPredicted RBP14.88□□□□□ -0.03
USP48-210ENST00000489108 OR5L2Q8NGL0 311 aa14.88□□□□□ -0.03
USP48-210ENST00000489108 OR14A16Q8NHC5 309 aa14.88□□□□□ -0.03
USP48-210ENST00000489108 SLC2A12Q8TD20 617 aa14.88□□□□□ -0.03
USP48-210ENST00000489108 GAL3ST3Q96A11 431 aa14.88□□□□□ -0.03
USP48-210ENST00000489108 TIMP4Q99727 224 aa14.88□□□□□ -0.03
USP48-210ENST00000489108 SH2D2AQ9NP31 389 aa14.88□□□□□ -0.03
USP48-210ENST00000489108 MRPS33Q9Y291 106 aaKnown RBP14.88□□□□□ -0.03
USP48-210ENST00000489108 DYRK1BQ9Y463 629 aa14.88□□□□□ -0.03
USP48-210ENST00000489108 CAPN6Q9Y6Q1 641 aa14.88□□□□□ -0.03
USP48-210ENST00000489108 C15orf38-AP3S2A0A0A6YYH1 394 aa14.87□□□□□ -0.03
USP48-210ENST00000489108 LRRC3CA6NJW4 275 aa14.87□□□□□ -0.03
USP48-210ENST00000489108 SDR42E2A6NKP2 422 aa14.87□□□□□ -0.03
USP48-210ENST00000489108 C17orf105B2RV13 164 aa14.87□□□□□ -0.03
USP48-210ENST00000489108 EEF1E1-BLOC1S5C9J1V9 151 aa14.87□□□□□ -0.03
USP48-210ENST00000489108 EEF1E1O43324 174 aaKnown RBP14.87□□□□□ -0.03
USP48-210ENST00000489108 ERI3O43414 337 aaKnown RBP14.87□□□□□ -0.03
USP48-210ENST00000489108 B3GALT2O43825 422 aa14.87□□□□□ -0.03
USP48-210ENST00000489108 CDKN2DP55273 166 aa14.87□□□□□ -0.03
USP48-210ENST00000489108 AP1S2P56377 157 aa14.87□□□□□ -0.03
USP48-210ENST00000489108 KIF5AQ12840 1032 aa14.87□□□□□ -0.03
USP48-210ENST00000489108 DUSP8Q13202 625 aa14.87□□□□□ -0.03
USP48-210ENST00000489108 TRIP13Q15645 432 aaPredicted RBP14.87□□□□□ -0.03
USP48-210ENST00000489108 ANKRD22Q5VYY1 191 aa14.87□□□□□ -0.03
USP48-210ENST00000489108 TMPRSS11BQ86T26 416 aa14.87□□□□□ -0.03
USP48-210ENST00000489108 THOC6Q86W42 341 aaKnown RBP14.87□□□□□ -0.03
USP48-210ENST00000489108 KLHDC8AQ8IYD2 350 aa14.87□□□□□ -0.03
USP48-210ENST00000489108 PAQR8Q8TEZ7 354 aa14.87□□□□□ -0.03
USP48-210ENST00000489108 ATL1Q8WXF7 558 aa14.87□□□□□ -0.03
USP48-210ENST00000489108 MS4A6EQ96DS6 147 aa14.87□□□□□ -0.03
USP48-210ENST00000489108 JSRP1Q96MG2 331 aaPredicted RBP14.87□□□□□ -0.03
USP48-210ENST00000489108 DACH2Q96NX9 599 aa14.87□□□□□ -0.03
USP48-210ENST00000489108 QRFPRQ96P65 431 aa14.87□□□□□ -0.03
USP48-210ENST00000489108 CSF3RQ99062 836 aa14.87□□□□□ -0.03
USP48-210ENST00000489108 WDR83Q9BRX9 315 aaKnown RBP14.87□□□□□ -0.03
USP48-210ENST00000489108 TRIM54Q9BYV2 358 aa14.87□□□□□ -0.03
USP48-210ENST00000489108 TAS2R13Q9NYV9 303 aa14.87□□□□□ -0.03
USP48-210ENST00000489108 JKAMPQ9P055 326 aa14.87□□□□□ -0.03
USP48-210ENST00000489108 TRPS1Q9UHF7 1281 aa14.87□□□□□ -0.03
USP48-210ENST00000489108 BOKQ9UMX3 212 aaPredicted RBP14.87□□□□□ -0.03
USP48-210ENST00000489108 DOCK7Q96N67 2140 aa14.86□□□□□ -0.03
USP48-210ENST00000489108 LRIT2A6NDA9 550 aa14.86□□□□□ -0.03
USP48-210ENST00000489108 PABPN1LA6NDY0 278 aaKnown RBP14.86□□□□□ -0.03
USP48-210ENST00000489108 TRIM64A6NGJ6 449 aa14.86□□□□□ -0.03
USP48-210ENST00000489108 TRIM64BA6NI03 449 aa14.86□□□□□ -0.03
USP48-210ENST00000489108 ETHE1O95571 254 aa14.86□□□□□ -0.03
USP48-210ENST00000489108 CTSSP25774 331 aa14.86□□□□□ -0.03
USP48-210ENST00000489108 PGGT1BP53609 377 aa14.86□□□□□ -0.03
USP48-210ENST00000489108 LIM2P55344 173 aa14.86□□□□□ -0.03
USP48-210ENST00000489108 CRYZQ08257 329 aaKnown RBP14.86□□□□□ -0.03
USP48-210ENST00000489108 STX4Q12846 297 aa14.86□□□□□ -0.03
USP48-210ENST00000489108 MPEG1Q2M385 716 aa14.86□□□□□ -0.03
USP48-210ENST00000489108 HSP90AA5PQ58FG0 334 aa14.86□□□□□ -0.03
USP48-210ENST00000489108 RBM20Q5T481 1227 aaKnown RBP14.86□□□□□ -0.03
USP48-210ENST00000489108 NSUN5P2Q63ZY6 315 aa14.86□□□□□ -0.03
USP48-210ENST00000489108 LYPD8Q6UX82 237 aa14.86□□□□□ -0.03
USP48-210ENST00000489108 YTHDF3Q7Z739 585 aaKnown RBP14.86□□□□□ -0.03
USP48-210ENST00000489108 LMNTD2Q8IXW0 634 aa14.86□□□□□ -0.03
USP48-210ENST00000489108 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP14.86□□□□□ -0.03
USP48-210ENST00000489108 RASGEF1CQ8N431 466 aa14.86□□□□□ -0.03
USP48-210ENST00000489108 CALML6Q8TD86 181 aa14.86□□□□□ -0.03
USP48-210ENST00000489108 ZNF721Q8TF20 911 aa14.86□□□□□ -0.03
USP48-210ENST00000489108 CCT6BQ92526 530 aa14.86□□□□□ -0.03
USP48-210ENST00000489108 RUNDC3BQ96NL0 473 aa14.86□□□□□ -0.03
USP48-210ENST00000489108 PIP5K1AQ99755 562 aa14.86□□□□□ -0.03
USP48-210ENST00000489108 TRIM5Q9C035 493 aa14.86□□□□□ -0.03
USP48-210ENST00000489108 HOMER3Q9NSC5 361 aa14.86□□□□□ -0.03
USP48-210ENST00000489108 IARS2Q9NSE4 1012 aaKnown RBP14.86□□□□□ -0.03
USP48-210ENST00000489108 QPCTLQ9NXS2 382 aa14.86□□□□□ -0.03
USP48-210ENST00000489108 SLC22A14Q9Y267 594 aa14.86□□□□□ -0.03
USP48-210ENST00000489108 MAD1L1Q9Y6D9 718 aa14.86□□□□□ -0.03
USP48-210ENST00000489108 CES2O00748 559 aa14.85□□□□□ -0.03
USP48-210ENST00000489108 LDB3O75112 727 aa14.85□□□□□ -0.03
USP48-210ENST00000489108 LRATO95237 230 aa14.85□□□□□ -0.03
USP48-210ENST00000489108 OPRM1P35372 400 aa14.85□□□□□ -0.03
USP48-210ENST00000489108 VPS41P49754 854 aa14.85□□□□□ -0.03
USP48-210ENST00000489108 PLA2G16P53816 162 aa14.85□□□□□ -0.03
USP48-210ENST00000489108 PRSS57Q6UWY2 283 aa14.85□□□□□ -0.03
USP48-210ENST00000489108 SMPDL3BQ92485 455 aa14.85□□□□□ -0.03
USP48-210ENST00000489108 HSPBAP1Q96EW2 488 aa14.85□□□□□ -0.03
USP48-210ENST00000489108 TRIB1Q96RU8 372 aa14.85□□□□□ -0.03
USP48-210ENST00000489108 DAPP1Q9UN19 280 aa14.85□□□□□ -0.03
USP48-210ENST00000489108 CAMK2AQ9UQM7 478 aa14.85□□□□□ -0.03
USP48-210ENST00000489108 SH3D21A4FU49 640 aa14.84□□□□□ -0.03
USP48-210ENST00000489108 SYNDIG1LA6NDD5 238 aa14.84□□□□□ -0.03
USP48-210ENST00000489108 CASKO14936 926 aa14.84□□□□□ -0.03
USP48-210ENST00000489108 C1QAP02745 245 aa14.84□□□□□ -0.03
USP48-210ENST00000489108 GDF1P27539 372 aa14.84□□□□□ -0.03
USP48-210ENST00000489108 CERS1P27544 350 aa14.84□□□□□ -0.03
USP48-210ENST00000489108 GABRB3P28472 473 aa14.84□□□□□ -0.03
USP48-210ENST00000489108 MAGEA6P43360 314 aa14.84□□□□□ -0.03
USP48-210ENST00000489108 IL2P60568 153 aa14.84□□□□□ -0.03
USP48-210ENST00000489108 ID2Q02363 134 aa14.84□□□□□ -0.03
USP48-210ENST00000489108 EFTUD2Q15029 972 aaKnown RBP eCLIP14.84□□□□□ -0.032e-7■□□□□ 9.7
USP48-210ENST00000489108 AGGF1Q8N302 714 aaeCLIP14.84□□□□□ -0.03
USP48-210ENST00000489108 FAM13CQ8NE31 585 aa14.84□□□□□ -0.03
USP48-210ENST00000489108 PIGTQ969N2 578 aa14.84□□□□□ -0.03
USP48-210ENST00000489108 ISL2Q96A47 359 aa14.84□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms