RNA–Protein interactions for RNA: ENST00000483723.5

CLK3-204, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,749 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-204ENST00000483723 TRIOO75962 3097 aa13.29□□□□□ -0.28
CLK3-204ENST00000483723 KNL1Q8NG31 2342 aa13.28□□□□□ -0.28
CLK3-204ENST00000483723 ACOX3O15254 700 aa13.28□□□□□ -0.28
CLK3-204ENST00000483723 CLOCKO15516 846 aa13.28□□□□□ -0.28
CLK3-204ENST00000483723 TPST1O60507 370 aa13.28□□□□□ -0.28
CLK3-204ENST00000483723 B4GALT2O60909 372 aa13.28□□□□□ -0.28
CLK3-204ENST00000483723 LDLRP01130 860 aa13.28□□□□□ -0.28
CLK3-204ENST00000483723 RPSAP08865 295 aaKnown RBP13.28□□□□□ -0.28
CLK3-204ENST00000483723 ETFAP13804 333 aa13.28□□□□□ -0.28
CLK3-204ENST00000483723 ALOX12P18054 663 aa13.28□□□□□ -0.28
CLK3-204ENST00000483723 CDH3P22223 829 aa13.28□□□□□ -0.28
CLK3-204ENST00000483723 CDK9P50750 372 aaKnown RBP13.28□□□□□ -0.28
CLK3-204ENST00000483723 RUNX2Q13950 521 aa13.28□□□□□ -0.28
CLK3-204ENST00000483723 LYSMD4Q5XG99 296 aa13.28□□□□□ -0.28
CLK3-204ENST00000483723 CCDC80Q76M96 950 aa13.28□□□□□ -0.28
CLK3-204ENST00000483723 ABHD13Q7L211 337 aa13.28□□□□□ -0.28
CLK3-204ENST00000483723 EIF3MQ7L2H7 374 aaKnown RBP13.28□□□□□ -0.28
CLK3-204ENST00000483723 C19orf47Q8N9M1 422 aaKnown RBP13.28□□□□□ -0.28
CLK3-204ENST00000483723 GAB3Q8WWW8 586 aa13.28□□□□□ -0.28
CLK3-204ENST00000483723 CNRIP1Q96F85 164 aaPredicted RBP13.28□□□□□ -0.28
CLK3-204ENST00000483723 SLC47A1Q96FL8 570 aa13.28□□□□□ -0.28
CLK3-204ENST00000483723 ZNF597Q96LX8 424 aa13.28□□□□□ -0.28
CLK3-204ENST00000483723 NTN4Q9HB63 628 aa13.28□□□□□ -0.28
CLK3-204ENST00000483723 C8orf4Q9NR00 106 aa13.28□□□□□ -0.28
CLK3-204ENST00000483723 ZSCAN32Q9NX65 697 aa13.28□□□□□ -0.28
CLK3-204ENST00000483723 PHF11Q9UIL8 331 aa13.28□□□□□ -0.28
CLK3-204ENST00000483723 RPS6KA6Q9UK32 745 aa13.28□□□□□ -0.28
CLK3-204ENST00000483723 ACSL6Q9UKU0 697 aa13.28□□□□□ -0.28
CLK3-204ENST00000483723 FAF1Q9UNN5 650 aaPredicted RBP13.28□□□□□ -0.28
CLK3-204ENST00000483723 SAMD4AQ9UPU9 718 aaKnown RBP13.28□□□□□ -0.28
CLK3-204ENST00000483723 SCN3AQ9NY46 2000 aa13.28□□□□□ -0.28
CLK3-204ENST00000483723 RNF103-CHMP3A0A140T963 221 aa13.27□□□□□ -0.28
CLK3-204ENST00000483723 FAM149AA5PLN7 773 aa13.27□□□□□ -0.28
CLK3-204ENST00000483723 UPK1AO00322 258 aa13.27□□□□□ -0.28
CLK3-204ENST00000483723 DENRO43583 198 aaKnown RBP13.27□□□□□ -0.28
CLK3-204ENST00000483723 HCRTR1O43613 425 aa13.27□□□□□ -0.28
CLK3-204ENST00000483723 SRPX2O60687 465 aaPredicted RBP13.27□□□□□ -0.28
CLK3-204ENST00000483723 SDC3O75056 442 aa13.27□□□□□ -0.28
CLK3-204ENST00000483723 PRKRAO75569 313 aaKnown RBP13.27□□□□□ -0.28
CLK3-204ENST00000483723 SEMG1P04279 462 aa13.27□□□□□ -0.28
CLK3-204ENST00000483723 ARAFP10398 606 aa13.27□□□□□ -0.28
CLK3-204ENST00000483723 CKMT2P17540 419 aa13.27□□□□□ -0.28
CLK3-204ENST00000483723 ZNF10P21506 573 aaPredicted RBP13.27□□□□□ -0.28
CLK3-204ENST00000483723 CHI3L1P36222 383 aaPredicted RBP13.27□□□□□ -0.28
CLK3-204ENST00000483723 CRATP43155 626 aa13.27□□□□□ -0.28
CLK3-204ENST00000483723 MAGEA2P43356 314 aa13.27□□□□□ -0.28
CLK3-204ENST00000483723 MAGEA8P43361 318 aa13.27□□□□□ -0.28
CLK3-204ENST00000483723 CRYBA2P53672 197 aa13.27□□□□□ -0.28
CLK3-204ENST00000483723 BNIP3Q12983 259 aa13.27□□□□□ -0.28
CLK3-204ENST00000483723 ZC3H12BQ5HYM0 836 aaKnown RBP13.27□□□□□ -0.28
CLK3-204ENST00000483723 C6orf132Q5T0Z8 1188 aa13.27□□□□□ -0.28
CLK3-204ENST00000483723 GCNT6Q5T4J0 391 aa13.27□□□□□ -0.28
CLK3-204ENST00000483723 TMEM64Q6YI46 380 aa13.27□□□□□ -0.28
CLK3-204ENST00000483723 ZBTB49Q6ZSB9 765 aa13.27□□□□□ -0.28
CLK3-204ENST00000483723 C6orf120Q7Z4R8 191 aa13.27□□□□□ -0.28
CLK3-204ENST00000483723 RNF130Q86XS8 419 aa13.27□□□□□ -0.28
CLK3-204ENST00000483723 EPHX4Q8IUS5 362 aa13.27□□□□□ -0.28
CLK3-204ENST00000483723 OR5AK3PQ8NH89 298 aa13.27□□□□□ -0.28
CLK3-204ENST00000483723 ZFP28Q8NHY6 868 aa13.27□□□□□ -0.28
CLK3-204ENST00000483723 SUN3Q8TAQ9 357 aa13.27□□□□□ -0.28
CLK3-204ENST00000483723 ZNF285Q96NJ3 590 aa13.27□□□□□ -0.28
CLK3-204ENST00000483723 BDH2Q9BUT1 245 aa13.27□□□□□ -0.28
CLK3-204ENST00000483723 VCXQ9H320 206 aa13.27□□□□□ -0.28
CLK3-204ENST00000483723 LYRM4Q9HD34 91 aa13.27□□□□□ -0.28
CLK3-204ENST00000483723 RAPGEFL1Q9UHV5 662 aa13.27□□□□□ -0.28
CLK3-204ENST00000483723 RAB26Q9ULW5 256 aa13.27□□□□□ -0.28
CLK3-204ENST00000483723 DAPP1Q9UN19 280 aa13.27□□□□□ -0.28
CLK3-204ENST00000483723 MRPS2Q9Y399 296 aaKnown RBP13.27□□□□□ -0.28
CLK3-204ENST00000483723 V9GYQ6 96 aa13.27□□□□□ -0.28
CLK3-204ENST00000483723 C7orf72A4D263 438 aa13.27□□□□□ -0.29
CLK3-204ENST00000483723 SLC9B1P1A6NJY1 282 aa13.27□□□□□ -0.29
CLK3-204ENST00000483723 TMEM229AB2RXF0 380 aa13.27□□□□□ -0.29
CLK3-204ENST00000483723 TNFRSF10AO00220 468 aa13.27□□□□□ -0.29
CLK3-204ENST00000483723 LAMTOR5O43504 91 aa13.27□□□□□ -0.29
CLK3-204ENST00000483723 B3GALT2O43825 422 aa13.27□□□□□ -0.29
CLK3-204ENST00000483723 DEAF1O75398 565 aaPredicted RBP13.27□□□□□ -0.29
CLK3-204ENST00000483723 CSNK2A2P19784 350 aaPredicted RBP13.27□□□□□ -0.29
CLK3-204ENST00000483723 GABRA4P48169 554 aa13.27□□□□□ -0.29
CLK3-204ENST00000483723 HSPA13P48723 471 aa13.27□□□□□ -0.29
CLK3-204ENST00000483723 CCT3P49368 545 aaKnown RBP13.27□□□□□ -0.29
CLK3-204ENST00000483723 LIM2P55344 173 aa13.27□□□□□ -0.29
CLK3-204ENST00000483723 TNFRSF17Q02223 184 aa13.27□□□□□ -0.29
CLK3-204ENST00000483723 ELOAQ14241 798 aaKnown RBP13.27□□□□□ -0.29
CLK3-204ENST00000483723 ZNF630Q2M218 657 aaPredicted RBP13.27□□□□□ -0.29
CLK3-204ENST00000483723 PRTGQ2VWP7 1150 aa13.27□□□□□ -0.29
CLK3-204ENST00000483723 DEFB134Q4QY38 66 aa13.27□□□□□ -0.29
CLK3-204ENST00000483723 MCATQ8IVS2 390 aaKnown RBP13.27□□□□□ -0.29
CLK3-204ENST00000483723 CSNK1A1LQ8N752 337 aa13.27□□□□□ -0.29
CLK3-204ENST00000483723 TCTN2Q96GX1 697 aa13.27□□□□□ -0.29
CLK3-204ENST00000483723 BBS4Q96RK4 519 aa13.27□□□□□ -0.29
CLK3-204ENST00000483723 ELF4Q99607 663 aaPredicted RBP13.27□□□□□ -0.29
CLK3-204ENST00000483723 MAP3K3Q99759 626 aa13.27□□□□□ -0.29
CLK3-204ENST00000483723 CIB1Q99828 191 aa13.27□□□□□ -0.29
CLK3-204ENST00000483723 C9orf16Q9BUW7 83 aa13.27□□□□□ -0.29
CLK3-204ENST00000483723 IL21RQ9HBE5 538 aa13.27□□□□□ -0.29
CLK3-204ENST00000483723 TMEM74BQ9NUR3 256 aa13.27□□□□□ -0.29
CLK3-204ENST00000483723 DNAAF2Q9NVR5 837 aaKnown RBP13.27□□□□□ -0.29
CLK3-204ENST00000483723 MS4A12Q9NXJ0 267 aa13.27□□□□□ -0.29
CLK3-204ENST00000483723 DNAJB9Q9UBS3 223 aa13.27□□□□□ -0.29
CLK3-204ENST00000483723 PILRBQ9UKJ0 227 aa13.27□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms