RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 PKD1L3Q7Z443 1732 aa5.01□□□□□ -1.61
USP40-213ENST00000483216 PSMA7O14818 248 aa5.01□□□□□ -1.61
USP40-213ENST00000483216 BAG3O95817 575 aa5.01□□□□□ -1.61
USP40-213ENST00000483216 IGHEP01854 428 aa5.01□□□□□ -1.61
USP40-213ENST00000483216 PRKACGP22612 351 aa5.01□□□□□ -1.61
USP40-213ENST00000483216 ACAT1P24752 427 aaKnown RBP5.01□□□□□ -1.61
USP40-213ENST00000483216 ALDH3A1P30838 453 aa5.01□□□□□ -1.61
USP40-213ENST00000483216 TSFMP43897 325 aaKnown RBP5.01□□□□□ -1.61
USP40-213ENST00000483216 TAF6P49848 677 aa5.01□□□□□ -1.61
USP40-213ENST00000483216 XGP55808 180 aa5.01□□□□□ -1.61
USP40-213ENST00000483216 IFT88Q13099 833 aa5.01□□□□□ -1.61
USP40-213ENST00000483216 ZNF273Q14593 569 aa5.01□□□□□ -1.61
USP40-213ENST00000483216 KARSQ15046 597 aaKnown RBP5.01□□□□□ -1.61
USP40-213ENST00000483216 TAB1Q15750 504 aa5.01□□□□□ -1.61
USP40-213ENST00000483216 HSP90AA5PQ58FG0 334 aa5.01□□□□□ -1.61
USP40-213ENST00000483216 DOK6Q6PKX4 331 aa5.01□□□□□ -1.61
USP40-213ENST00000483216 ENPP7Q6UWV6 458 aa5.01□□□□□ -1.61
USP40-213ENST00000483216 FCRLAQ7L513 359 aa5.01□□□□□ -1.61
USP40-213ENST00000483216 RCOR2Q8IZ40 523 aa5.01□□□□□ -1.61
USP40-213ENST00000483216 FAM81AQ8TBF8 368 aa5.01□□□□□ -1.61
USP40-213ENST00000483216 ERP27Q96DN0 273 aa5.01□□□□□ -1.61
USP40-213ENST00000483216 CHMP6Q96FZ7 201 aa5.01□□□□□ -1.61
USP40-213ENST00000483216 TDRD1Q9BXT4 1180 aaKnown RBP5.01□□□□□ -1.61
USP40-213ENST00000483216 CUEDC2Q9H467 287 aa5.01□□□□□ -1.61
USP40-213ENST00000483216 THAP9Q9H5L6 903 aa5.01□□□□□ -1.61
USP40-213ENST00000483216 EXOC1Q9NV70 894 aa5.01□□□□□ -1.61
USP40-213ENST00000483216 THEGQ9P2T0 379 aa5.01□□□□□ -1.61
USP40-213ENST00000483216 SNX12Q9UMY4 172 aa5.01□□□□□ -1.61
USP40-213ENST00000483216 C15orf41Q9Y2V0 281 aa5.01□□□□□ -1.61
USP40-213ENST00000483216 MMP24Q9Y5R2 645 aa5.01□□□□□ -1.61
USP40-213ENST00000483216 DYNC1LI1Q9Y6G9 523 aaKnown RBP5.01□□□□□ -1.61
USP40-213ENST00000483216 CSNK1G3Q9Y6M4 447 aa5.01□□□□□ -1.61
USP40-213ENST00000483216 MEGF6O75095 1541 aa5.01□□□□□ -1.61
USP40-213ENST00000483216 CPDO75976 1380 aa5.01□□□□□ -1.61
USP40-213ENST00000483216 NHSL1Q5SYE7 1610 aa5.01□□□□□ -1.61
USP40-213ENST00000483216 PARP4Q9UKK3 1724 aaKnown RBP5□□□□□ -1.61
USP40-213ENST00000483216 C5P01031 1676 aa5□□□□□ -1.61
USP40-213ENST00000483216 CCT8L1PA6NM43 557 aa5□□□□□ -1.61
USP40-213ENST00000483216 TRAPPC3O43617 180 aa5□□□□□ -1.61
USP40-213ENST00000483216 DKC1O60832 514 aaKnown RBP eCLIP5□□□□□ -1.61
USP40-213ENST00000483216 CRLF1O75462 422 aa5□□□□□ -1.61
USP40-213ENST00000483216 CEACAM4O75871 244 aa5□□□□□ -1.61
USP40-213ENST00000483216 ATP6V1G2O95670 118 aa5□□□□□ -1.61
USP40-213ENST00000483216 DESP17661 470 aa5□□□□□ -1.61
USP40-213ENST00000483216 ELAVL4P26378 380 aaKnown RBP5□□□□□ -1.61
USP40-213ENST00000483216 CETN2P41208 172 aa5□□□□□ -1.61
USP40-213ENST00000483216 SOX3P41225 446 aa5□□□□□ -1.61
USP40-213ENST00000483216 OR3A2P47893 321 aa5□□□□□ -1.61
USP40-213ENST00000483216 IRX4P78413 519 aa5□□□□□ -1.61
USP40-213ENST00000483216 MZT1Q08AG7 82 aa5□□□□□ -1.61
USP40-213ENST00000483216 SRSF9Q13242 221 aaKnown RBP eCLIP5□□□□□ -1.61
USP40-213ENST00000483216 CDH18Q13634 790 aa5□□□□□ -1.61
USP40-213ENST00000483216 MTF1Q14872 753 aa5□□□□□ -1.61
USP40-213ENST00000483216 PPP1R7Q15435 360 aa5□□□□□ -1.61
USP40-213ENST00000483216 FAM174BQ3ZCQ3 159 aa5□□□□□ -1.61
USP40-213ENST00000483216 C2CD6Q53TS8 623 aa5□□□□□ -1.61
USP40-213ENST00000483216 ANKRD20A8PQ5CZ79 823 aa5□□□□□ -1.61
USP40-213ENST00000483216 C6orf136Q5SQH8 315 aa5□□□□□ -1.61
USP40-213ENST00000483216 NOTUMQ6P988 496 aa5□□□□□ -1.61
USP40-213ENST00000483216 C6orf89Q6UWU4 347 aa5□□□□□ -1.61
USP40-213ENST00000483216 PPP1R21Q6ZMI0 780 aa5□□□□□ -1.61
USP40-213ENST00000483216 VPS36Q86VN1 386 aa5□□□□□ -1.61
USP40-213ENST00000483216 LCA5Q86VQ0 697 aa5□□□□□ -1.61
USP40-213ENST00000483216 CATSPERDQ86XM0 798 aa5□□□□□ -1.61
USP40-213ENST00000483216 SYCE1Q8N0S2 351 aa5□□□□□ -1.61
USP40-213ENST00000483216 NUP37Q8NFH4 326 aa5□□□□□ -1.61
USP40-213ENST00000483216 OR5T2Q8NGG2 359 aa5□□□□□ -1.61
USP40-213ENST00000483216 SEPT1Q8WYJ6 367 aa5□□□□□ -1.61
USP40-213ENST00000483216 PGM2Q96G03 612 aa5□□□□□ -1.61
USP40-213ENST00000483216 OLFM3Q96PB7 478 aa5□□□□□ -1.61
USP40-213ENST00000483216 KLHL5Q96PQ7 755 aa5□□□□□ -1.61
USP40-213ENST00000483216 SPZ1Q9BXG8 430 aa5□□□□□ -1.61
USP40-213ENST00000483216 TRIM4Q9C037 500 aa5□□□□□ -1.61
USP40-213ENST00000483216 HOXD1Q9GZZ0 328 aa5□□□□□ -1.61
USP40-213ENST00000483216 RAB17Q9H0T7 212 aa5□□□□□ -1.61
USP40-213ENST00000483216 FAM114A2Q9NRY5 505 aa5□□□□□ -1.61
USP40-213ENST00000483216 TMCO1Q9UM00 188 aa5□□□□□ -1.61
USP40-213ENST00000483216 GUCA1BQ9UMX6 200 aa5□□□□□ -1.61
USP40-213ENST00000483216 BZW2Q9Y6E2 419 aaKnown RBP5□□□□□ -1.61
USP40-213ENST00000483216 LRP6O75581 1613 aa5□□□□□ -1.61
USP40-213ENST00000483216 PALLDQ8WX93 1383 aa5□□□□□ -1.61
USP40-213ENST00000483216 KAT6BQ8WYB5 2073 aa5□□□□□ -1.61
USP40-213ENST00000483216 CCL24O00175 119 aa4.99□□□□□ -1.61
USP40-213ENST00000483216 LAD1O00515 517 aa4.99□□□□□ -1.61
USP40-213ENST00000483216 JAK2O60674 1132 aa4.99□□□□□ -1.61
USP40-213ENST00000483216 N4BP1O75113 896 aaKnown RBP4.99□□□□□ -1.61
USP40-213ENST00000483216 ANP32DO95626 131 aa4.99□□□□□ -1.61
USP40-213ENST00000483216 PENKP01210 267 aaPredicted RBP4.99□□□□□ -1.61
USP40-213ENST00000483216 SERPING1P05155 500 aa4.99□□□□□ -1.61
USP40-213ENST00000483216 CALM1P0DP23 149 aa4.99□□□□□ -1.61
USP40-213ENST00000483216 CALM2P0DP24 149 aa4.99□□□□□ -1.61
USP40-213ENST00000483216 CALM3P0DP25 149 aa4.99□□□□□ -1.61
USP40-213ENST00000483216 CPA3P15088 417 aa4.99□□□□□ -1.61
USP40-213ENST00000483216 ACADSP16219 412 aa4.99□□□□□ -1.61
USP40-213ENST00000483216 PTAFRP25105 342 aa4.99□□□□□ -1.61
USP40-213ENST00000483216 HSPA9P38646 679 aaKnown RBP4.99□□□□□ -1.61
USP40-213ENST00000483216 CCT6AP40227 531 aaKnown RBP4.99□□□□□ -1.61
USP40-213ENST00000483216 ZNF41P51814 821 aaPredicted RBP4.99□□□□□ -1.61
USP40-213ENST00000483216 MTCP1P56278 107 aa4.99□□□□□ -1.61
USP40-213ENST00000483216 UBXN1Q04323 297 aa4.99□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms