RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 SQLEQ14534 574 aa11.52□□□□□ -0.57
SDC1-206ENST00000482879 MINDY4Q4G0A6 757 aa11.52□□□□□ -0.57
SDC1-206ENST00000482879 SHISA6Q6ZSJ9 500 aa11.52□□□□□ -0.57
SDC1-206ENST00000482879 MED25Q71SY5 747 aa11.52□□□□□ -0.57
SDC1-206ENST00000482879 R3HCC1LQ7Z5L2 792 aaKnown RBP11.52□□□□□ -0.57
SDC1-206ENST00000482879 LAPTM4BQ86VI4 370 aa11.52□□□□□ -0.57
SDC1-206ENST00000482879 DTX1Q86Y01 620 aa11.52□□□□□ -0.57
SDC1-206ENST00000482879 TICAM1Q8IUC6 712 aa11.52□□□□□ -0.57
SDC1-206ENST00000482879 ZNF595Q8IYB9 648 aa11.52□□□□□ -0.57
SDC1-206ENST00000482879 IL22RA1Q8N6P7 574 aa11.52□□□□□ -0.57
SDC1-206ENST00000482879 ENDOVQ8N8Q3 282 aaKnown RBP11.52□□□□□ -0.57
SDC1-206ENST00000482879 CCDC197Q8NCU1 140 aa11.52□□□□□ -0.57
SDC1-206ENST00000482879 TANKQ92844 425 aa11.52□□□□□ -0.57
SDC1-206ENST00000482879 NKD1Q969G9 470 aa11.52□□□□□ -0.57
SDC1-206ENST00000482879 SLC45A3Q96JT2 553 aa11.52□□□□□ -0.57
SDC1-206ENST00000482879 REEP4Q9H6H4 257 aa11.52□□□□□ -0.57
SDC1-206ENST00000482879 SOX17Q9H6I2 414 aaPredicted RBP11.52□□□□□ -0.57
SDC1-206ENST00000482879 WDR54Q9H977 334 aa11.52□□□□□ -0.57
SDC1-206ENST00000482879 MIEF1Q9NQG6 463 aa11.52□□□□□ -0.57
SDC1-206ENST00000482879 SDR39U1Q9NRG7 319 aaPredicted RBP11.52□□□□□ -0.57
SDC1-206ENST00000482879 LANCL2Q9NS86 450 aa11.52□□□□□ -0.57
SDC1-206ENST00000482879 WDR70Q9NW82 654 aa11.52□□□□□ -0.57
SDC1-206ENST00000482879 CROTQ9UKG9 612 aa11.52□□□□□ -0.57
SDC1-206ENST00000482879 NXT1Q9UKK6 140 aaKnown RBP11.52□□□□□ -0.57
SDC1-206ENST00000482879 PSME2Q9UL46 239 aa11.52□□□□□ -0.57
SDC1-206ENST00000482879 MAPRE3Q9UPY8 281 aa11.52□□□□□ -0.57
SDC1-206ENST00000482879 EXO1Q9UQ84 846 aaKnown RBP11.52□□□□□ -0.57
SDC1-206ENST00000482879 FARSAQ9Y285 508 aaKnown RBP11.52□□□□□ -0.57
SDC1-206ENST00000482879 CACNA1AO00555 2505 aa11.52□□□□□ -0.57
SDC1-206ENST00000482879 LOC101059948A0A1B0GTJ6 334 aa11.51□□□□□ -0.57
SDC1-206ENST00000482879 GABRR3A8MPY1 467 aa11.51□□□□□ -0.57
SDC1-206ENST00000482879 C21orf140B9A014 251 aa11.51□□□□□ -0.57
SDC1-206ENST00000482879 ANKRD28O15084 1053 aa11.51□□□□□ -0.57
SDC1-206ENST00000482879 SCAMP2O15127 329 aaKnown RBP11.51□□□□□ -0.57
SDC1-206ENST00000482879 CCDC22O60826 627 aa11.51□□□□□ -0.57
SDC1-206ENST00000482879 CTNSO60931 367 aa11.51□□□□□ -0.57
SDC1-206ENST00000482879 LDB3O75112 727 aa11.51□□□□□ -0.57
SDC1-206ENST00000482879 SLC22A3O75751 556 aa11.51□□□□□ -0.57
SDC1-206ENST00000482879 HEXBP07686 556 aa11.51□□□□□ -0.57
SDC1-206ENST00000482879 FURINP09958 794 aa11.51□□□□□ -0.57
SDC1-206ENST00000482879 LIPCP11150 499 aa11.51□□□□□ -0.57
SDC1-206ENST00000482879 COX7A2P14406 83 aa11.51□□□□□ -0.57
SDC1-206ENST00000482879 GPX3P22352 226 aa11.51□□□□□ -0.57
SDC1-206ENST00000482879 DLSTP36957 453 aa11.51□□□□□ -0.57
SDC1-206ENST00000482879 RPL3P39023 403 aaKnown RBP11.51□□□□□ -0.57
SDC1-206ENST00000482879 MRPL19P49406 292 aaKnown RBP11.51□□□□□ -0.57
SDC1-206ENST00000482879 CLNS1AP54105 237 aaKnown RBP11.51□□□□□ -0.57
SDC1-206ENST00000482879 EMP2P54851 167 aa11.51□□□□□ -0.57
SDC1-206ENST00000482879 HSD17B7P56937 341 aa11.51□□□□□ -0.57
SDC1-206ENST00000482879 FOXL2P58012 376 aa11.51□□□□□ -0.57
SDC1-206ENST00000482879 BTG2P78543 158 aa11.51□□□□□ -0.57
SDC1-206ENST00000482879 ID2Q02363 134 aa11.51□□□□□ -0.57
SDC1-206ENST00000482879 SLC13A2Q13183 592 aa11.51□□□□□ -0.57
SDC1-206ENST00000482879 DNASE1L3Q13609 305 aa11.51□□□□□ -0.57
SDC1-206ENST00000482879 TGIF1Q15583 401 aa11.51□□□□□ -0.57
SDC1-206ENST00000482879 OR52E8Q6IFG1 317 aa11.51□□□□□ -0.57
SDC1-206ENST00000482879 ANKRD26P1Q6NSI1 321 aa11.51□□□□□ -0.57
SDC1-206ENST00000482879 SLC48A1Q6P1K1 146 aa11.51□□□□□ -0.57
SDC1-206ENST00000482879 PAOXQ6QHF9 649 aa11.51□□□□□ -0.57
SDC1-206ENST00000482879 MTDHQ86UE4 582 aaKnown RBP11.51□□□□□ -0.57
SDC1-206ENST00000482879 OR4N5Q8IXE1 308 aa11.51□□□□□ -0.57
SDC1-206ENST00000482879 RIMKLAQ8IXN7 391 aa11.51□□□□□ -0.57
SDC1-206ENST00000482879 CPSF7Q8N684 471 aaKnown RBP11.51□□□□□ -0.57
SDC1-206ENST00000482879 OR7A2PQ8NGA2 310 aa11.51□□□□□ -0.57
SDC1-206ENST00000482879 DNAJB14Q8TBM8 379 aa11.51□□□□□ -0.57
SDC1-206ENST00000482879 NUDT8Q8WV74 236 aa11.51□□□□□ -0.57
SDC1-206ENST00000482879 STARD8Q92502 1023 aa11.51□□□□□ -0.57
SDC1-206ENST00000482879 FGF11Q92914 225 aa11.51□□□□□ -0.57
SDC1-206ENST00000482879 EXOSC8Q96B26 276 aaKnown RBP11.51□□□□□ -0.57
SDC1-206ENST00000482879 PPCDCQ96CD2 204 aa11.51□□□□□ -0.57
SDC1-206ENST00000482879 MTERF3Q96E29 417 aa11.51□□□□□ -0.57
SDC1-206ENST00000482879 TEX37Q96LM6 180 aa11.51□□□□□ -0.57
SDC1-206ENST00000482879 PTCHD1Q96NR3 888 aa11.51□□□□□ -0.57
SDC1-206ENST00000482879 ZBTB18Q99592 522 aa11.51□□□□□ -0.57
SDC1-206ENST00000482879 SPSB2Q99619 263 aa11.51□□□□□ -0.57
SDC1-206ENST00000482879 PRPF18Q99633 342 aaKnown RBP11.51□□□□□ -0.57
SDC1-206ENST00000482879 NMUR2Q9GZQ4 415 aa11.51□□□□□ -0.57
SDC1-206ENST00000482879 ACTL8Q9H568 366 aa11.51□□□□□ -0.57
SDC1-206ENST00000482879 PRDM9Q9NQV7 894 aa11.51□□□□□ -0.57
SDC1-206ENST00000482879 SAR1AQ9NR31 198 aa11.51□□□□□ -0.57
SDC1-206ENST00000482879 EHD3Q9NZN3 535 aa11.51□□□□□ -0.57
SDC1-206ENST00000482879 ZIM2Q9NZV7 527 aa11.51□□□□□ -0.57
SDC1-206ENST00000482879 SH3BP4Q9P0V3 963 aa11.51□□□□□ -0.57
SDC1-206ENST00000482879 C5AR2Q9P296 337 aa11.51□□□□□ -0.57
SDC1-206ENST00000482879 ATP6V1HQ9UI12 483 aa11.51□□□□□ -0.57
SDC1-206ENST00000482879 UTS2RQ9UKP6 389 aa11.51□□□□□ -0.57
SDC1-206ENST00000482879 ANGPTL2Q9UKU9 493 aa11.51□□□□□ -0.57
SDC1-206ENST00000482879 CES1P1Q9UKY3 287 aa11.51□□□□□ -0.57
SDC1-206ENST00000482879 MKL2Q9ULH7 1088 aa11.51□□□□□ -0.57
SDC1-206ENST00000482879 PADI2Q9Y2J8 665 aa11.51□□□□□ -0.57
SDC1-206ENST00000482879 PTRH2Q9Y3E5 179 aaKnown RBP11.51□□□□□ -0.57
SDC1-206ENST00000482879 MMACHCQ9Y4U1 282 aa11.51□□□□□ -0.57
SDC1-206ENST00000482879 URB1O60287 2271 aaKnown RBP11.51□□□□□ -0.57
SDC1-206ENST00000482879 APC2O95996 2303 aa11.51□□□□□ -0.57
SDC1-206ENST00000482879 NCOR2Q9Y618 2525 aa11.5□□□□□ -0.57
SDC1-206ENST00000482879 MYOCOSA0A1B0GUC4 107 aa11.5□□□□□ -0.57
SDC1-206ENST00000482879 IDSB3KWA1 339 aa11.5□□□□□ -0.57
SDC1-206ENST00000482879 C9JVG2 144 aa11.5□□□□□ -0.57
SDC1-206ENST00000482879 FCHO1O14526 889 aa11.5□□□□□ -0.57
SDC1-206ENST00000482879 FGF17O60258 216 aa11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms