RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 HSF1Q00613 529 aa14.62□□□□□ -0.07
CCDC88B-205ENST00000472524 PCDH1Q08174 1060 aa14.62□□□□□ -0.07
CCDC88B-205ENST00000472524 SLAMF1Q13291 335 aa14.62□□□□□ -0.07
CCDC88B-205ENST00000472524 GTF2H2Q13888 395 aa14.62□□□□□ -0.07
CCDC88B-205ENST00000472524 KRTCAP3Q53RY4 240 aa14.62□□□□□ -0.07
CCDC88B-205ENST00000472524 TECRLQ5HYJ1 363 aa14.62□□□□□ -0.07
CCDC88B-205ENST00000472524 RNFT1Q5M7Z0 435 aa14.62□□□□□ -0.07
CCDC88B-205ENST00000472524 DEPDC1Q5TB30 811 aa14.62□□□□□ -0.07
CCDC88B-205ENST00000472524 LIPJQ5W064 366 aa14.62□□□□□ -0.07
CCDC88B-205ENST00000472524 OR4C11Q6IEV9 310 aa14.62□□□□□ -0.07
CCDC88B-205ENST00000472524 GTF2H2CQ6P1K8 395 aa14.62□□□□□ -0.07
CCDC88B-205ENST00000472524 BNC2Q6ZN30 1099 aaPredicted RBP14.62□□□□□ -0.07
CCDC88B-205ENST00000472524 GOLGA7Q7Z5G4 137 aa14.62□□□□□ -0.07
CCDC88B-205ENST00000472524 SIAH3Q8IW03 269 aa14.62□□□□□ -0.07
CCDC88B-205ENST00000472524 ZNF321PQ8N8H1 164 aa14.62□□□□□ -0.07
CCDC88B-205ENST00000472524 MNS1Q8NEH6 495 aa14.62□□□□□ -0.07
CCDC88B-205ENST00000472524 OR14A16Q8NHC5 309 aa14.62□□□□□ -0.07
CCDC88B-205ENST00000472524 UHMK1Q8TAS1 419 aaKnown RBP14.62□□□□□ -0.07
CCDC88B-205ENST00000472524 SLC44A1Q8WWI5 657 aa14.62□□□□□ -0.07
CCDC88B-205ENST00000472524 RGMAQ96B86 450 aa14.62□□□□□ -0.07
CCDC88B-205ENST00000472524 GPR78Q96P69 363 aa14.62□□□□□ -0.07
CCDC88B-205ENST00000472524 CENPKQ9BS16 269 aa14.62□□□□□ -0.07
CCDC88B-205ENST00000472524 OR8D2Q9GZM6 311 aa14.62□□□□□ -0.07
CCDC88B-205ENST00000472524 ZNF358Q9NW07 568 aa14.62□□□□□ -0.07
CCDC88B-205ENST00000472524 VTI1BQ9UEU0 232 aa14.62□□□□□ -0.07
CCDC88B-205ENST00000472524 ADGRE2Q9UHX3 823 aa14.62□□□□□ -0.07
CCDC88B-205ENST00000472524 IKBKGQ9Y6K9 419 aa14.62□□□□□ -0.07
CCDC88B-205ENST00000472524 NINQ8N4C6 2090 aa14.62□□□□□ -0.07
CCDC88B-205ENST00000472524 CCDC189A1A4V9 331 aa14.61□□□□□ -0.07
CCDC88B-205ENST00000472524 C17orf105B2RV13 164 aa14.61□□□□□ -0.07
CCDC88B-205ENST00000472524 POC1B-GALNT4F8VUJ3 575 aa14.61□□□□□ -0.07
CCDC88B-205ENST00000472524 PLPP1O14494 284 aa14.61□□□□□ -0.07
CCDC88B-205ENST00000472524 TFECO14948 347 aaPredicted RBP14.61□□□□□ -0.07
CCDC88B-205ENST00000472524 ASNA1O43681 348 aa14.61□□□□□ -0.07
CCDC88B-205ENST00000472524 KLK8O60259 260 aa14.61□□□□□ -0.07
CCDC88B-205ENST00000472524 OR2J2O76002 312 aa14.61□□□□□ -0.07
CCDC88B-205ENST00000472524 SCELO95171 688 aa14.61□□□□□ -0.07
CCDC88B-205ENST00000472524 FREM3P0C091 2139 aa14.61□□□□□ -0.07
CCDC88B-205ENST00000472524 CTAGE8P0CG41 777 aa14.61□□□□□ -0.07
CCDC88B-205ENST00000472524 ABOP16442 354 aa14.61□□□□□ -0.07
CCDC88B-205ENST00000472524 GPR85P60893 370 aa14.61□□□□□ -0.07
CCDC88B-205ENST00000472524 PHEXP78562 749 aa14.61□□□□□ -0.07
CCDC88B-205ENST00000472524 SERTAD2Q14140 314 aa14.61□□□□□ -0.07
CCDC88B-205ENST00000472524 PCBP2Q15366 365 aaKnown RBP eCLIP14.61□□□□□ -0.07
CCDC88B-205ENST00000472524 CPSF6Q16630 551 aaKnown RBP eCLIP14.61□□□□□ -0.07
CCDC88B-205ENST00000472524 ZNF630Q2M218 657 aaPredicted RBP14.61□□□□□ -0.07
CCDC88B-205ENST00000472524 HSDL2Q6YN16 418 aa14.61□□□□□ -0.07
CCDC88B-205ENST00000472524 TAOK1Q7L7X3 1001 aa14.61□□□□□ -0.07
CCDC88B-205ENST00000472524 MDGA2Q7Z553 956 aa14.61□□□□□ -0.07
CCDC88B-205ENST00000472524 SPPL2CQ8IUH8 684 aa14.61□□□□□ -0.07
CCDC88B-205ENST00000472524 RELL1Q8IUW5 271 aa14.61□□□□□ -0.07
CCDC88B-205ENST00000472524 SULF2Q8IWU5 870 aa14.61□□□□□ -0.07
CCDC88B-205ENST00000472524 CTAGE4Q8IX94 777 aa14.61□□□□□ -0.07
CCDC88B-205ENST00000472524 GHDCQ8N2G8 530 aa14.61□□□□□ -0.07
CCDC88B-205ENST00000472524 ZNF808Q8N4W9 903 aaPredicted RBP14.61□□□□□ -0.07
CCDC88B-205ENST00000472524 PTGR2Q8N8N7 351 aaPredicted RBP14.61□□□□□ -0.07
CCDC88B-205ENST00000472524 MORN4Q8NDC4 146 aa14.61□□□□□ -0.07
CCDC88B-205ENST00000472524 SLC2A12Q8TD20 617 aa14.61□□□□□ -0.07
CCDC88B-205ENST00000472524 PTPMT1Q8WUK0 201 aaPredicted RBP14.61□□□□□ -0.07
CCDC88B-205ENST00000472524 ANKRD9Q96BM1 317 aaPredicted RBP14.61□□□□□ -0.07
CCDC88B-205ENST00000472524 SCYL1Q96KG9 808 aa14.61□□□□□ -0.07
CCDC88B-205ENST00000472524 PAFAH2Q99487 392 aa14.61□□□□□ -0.07
CCDC88B-205ENST00000472524 TSPYL1Q9H0U9 437 aa14.61□□□□□ -0.07
CCDC88B-205ENST00000472524 RUBCNLQ9H714 662 aa14.61□□□□□ -0.07
CCDC88B-205ENST00000472524 IPPKQ9H8X2 491 aa14.61□□□□□ -0.07
CCDC88B-205ENST00000472524 ERVK-11Q9UQG0 969 aa14.61□□□□□ -0.07
CCDC88B-205ENST00000472524 YARS2Q9Y2Z4 477 aaKnown RBP14.61□□□□□ -0.07
CCDC88B-205ENST00000472524 PCDHGA11Q9Y5H2 935 aa14.61□□□□□ -0.07
CCDC88B-205ENST00000472524 TMEM200CA6NKL6 621 aa14.6□□□□□ -0.07
CCDC88B-205ENST00000472524 A8MVJ9 347 aa14.6□□□□□ -0.07
CCDC88B-205ENST00000472524 WWP2O00308 870 aa14.6□□□□□ -0.07
CCDC88B-205ENST00000472524 PEX1O43933 1283 aa14.6□□□□□ -0.07
CCDC88B-205ENST00000472524 FGF17O60258 216 aa14.6□□□□□ -0.07
CCDC88B-205ENST00000472524 PRKRAO75569 313 aaKnown RBP14.6□□□□□ -0.07
CCDC88B-205ENST00000472524 ESRRAP11474 423 aaPredicted RBP14.6□□□□□ -0.07
CCDC88B-205ENST00000472524 ECHS1P30084 290 aa14.6□□□□□ -0.07
CCDC88B-205ENST00000472524 PIK3CBP42338 1070 aa14.6□□□□□ -0.07
CCDC88B-205ENST00000472524 PIK3CGP48736 1102 aa14.6□□□□□ -0.07
CCDC88B-205ENST00000472524 MTFR2Q6P444 385 aa14.6□□□□□ -0.07
CCDC88B-205ENST00000472524 IL20RBQ6UXL0 311 aa14.6□□□□□ -0.07
CCDC88B-205ENST00000472524 RPTNQ6XPR3 784 aa14.6□□□□□ -0.07
CCDC88B-205ENST00000472524 OR4N5Q8IXE1 308 aa14.6□□□□□ -0.07
CCDC88B-205ENST00000472524 POGLUT1Q8NBL1 392 aa14.6□□□□□ -0.07
CCDC88B-205ENST00000472524 ASB15Q8WXK1 588 aa14.6□□□□□ -0.07
CCDC88B-205ENST00000472524 REPS1Q96D71 796 aa14.6□□□□□ -0.07
CCDC88B-205ENST00000472524 PHF21BQ96EK2 531 aa14.6□□□□□ -0.07
CCDC88B-205ENST00000472524 DGAT2Q96PD7 388 aa14.6□□□□□ -0.07
CCDC88B-205ENST00000472524 CDK15Q96Q40 435 aa14.6□□□□□ -0.07
CCDC88B-205ENST00000472524 FUT8Q9BYC5 575 aa14.6□□□□□ -0.07
CCDC88B-205ENST00000472524 TIMMDC1Q9NPL8 285 aa14.6□□□□□ -0.07
CCDC88B-205ENST00000472524 HPF1Q9NWY4 346 aa14.6□□□□□ -0.07
CCDC88B-205ENST00000472524 MYOTQ9UBF9 498 aa14.6□□□□□ -0.07
CCDC88B-205ENST00000472524 ZNF835Q9Y2P0 537 aa14.6□□□□□ -0.07
CCDC88B-205ENST00000472524 RNF11Q9Y3C5 154 aa14.6□□□□□ -0.07
CCDC88B-205ENST00000472524 TNPO3Q9Y5L0 923 aaKnown RBP14.6□□□□□ -0.07
CCDC88B-205ENST00000472524 PDZD2O15018 2839 aa14.6□□□□□ -0.07
CCDC88B-205ENST00000472524 H0YIV9 168 aa14.59□□□□□ -0.07
CCDC88B-205ENST00000472524 KLRC4-KLRK1H3BQV0 150 aa14.59□□□□□ -0.07
CCDC88B-205ENST00000472524 UGDHO60701 494 aa14.59□□□□□ -0.07
CCDC88B-205ENST00000472524 OR6B1O95007 311 aa14.59□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms