RNA–Protein interactions for RNA: ENST00000462815.5

PTPN7-204, Transcript of protein tyrosine phosphatase, non-receptor type 7, human

TSL 2

Gene PTPN7, Length 1,147 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN7-204	ENST00000462815	SNTB1	Q13884	538 aa	Known RBP	10.3	□□□□□ -0.76
PTPN7-204	ENST00000462815	TGFBI	Q15582	683 aa		10.3	□□□□□ -0.76
PTPN7-204	ENST00000462815	MPEG1	Q2M385	716 aa		10.3	□□□□□ -0.76
PTPN7-204	ENST00000462815	SLC25A35	Q3KQZ1	300 aa		10.3	□□□□□ -0.76
PTPN7-204	ENST00000462815	PIGG	Q5H8A4	983 aa		10.3	□□□□□ -0.76
PTPN7-204	ENST00000462815	C1orf185	Q5T7R7	199 aa		10.3	□□□□□ -0.76
PTPN7-204	ENST00000462815	RIPPLY2	Q5TAB7	128 aa		10.3	□□□□□ -0.76
PTPN7-204	ENST00000462815	ZNF585A	Q6P3V2	769 aa		10.3	□□□□□ -0.76
PTPN7-204	ENST00000462815	ADAMTSL2	Q86TH1	951 aa		10.3	□□□□□ -0.76
PTPN7-204	ENST00000462815	CLYBL	Q8N0X4	340 aa		10.3	□□□□□ -0.76
PTPN7-204	ENST00000462815	RELL2	Q8NC24	303 aa	Predicted RBP	10.3	□□□□□ -0.76
PTPN7-204	ENST00000462815	NAXE	Q8NCW5	288 aa		10.3	□□□□□ -0.76
PTPN7-204	ENST00000462815	DAZL	Q92904	295 aa	Known RBP	10.3	□□□□□ -0.76
PTPN7-204	ENST00000462815	CFAP36	Q96G28	342 aa		10.3	□□□□□ -0.76
PTPN7-204	ENST00000462815	SGCZ	Q96LD1	299 aa		10.3	□□□□□ -0.76
PTPN7-204	ENST00000462815	NAP1L3	Q99457	506 aa	Predicted RBP	10.3	□□□□□ -0.76
PTPN7-204	ENST00000462815	SH3GL2	Q99962	352 aa		10.3	□□□□□ -0.76
PTPN7-204	ENST00000462815	MAPKAP1	Q9BPZ7	522 aa		10.3	□□□□□ -0.76
PTPN7-204	ENST00000462815	ALOXE3	Q9BYJ1	711 aa		10.3	□□□□□ -0.76
PTPN7-204	ENST00000462815	POPDC3	Q9HBV1	291 aa		10.3	□□□□□ -0.76
PTPN7-204	ENST00000462815	LYRM4	Q9HD34	91 aa		10.3	□□□□□ -0.76
PTPN7-204	ENST00000462815	SMYD2	Q9NRG4	433 aa		10.3	□□□□□ -0.76
PTPN7-204	ENST00000462815	DNAJB12	Q9NXW2	375 aa	Known RBP	10.3	□□□□□ -0.76
PTPN7-204	ENST00000462815	MRPS33	Q9Y291	106 aa	Known RBP	10.3	□□□□□ -0.76
PTPN7-204	ENST00000462815	RPH3A	Q9Y2J0	694 aa	Predicted RBP	10.3	□□□□□ -0.76
PTPN7-204	ENST00000462815	CLCA3P	Q9Y6N3	262 aa		10.3	□□□□□ -0.76
PTPN7-204	ENST00000462815	ARHGAP21	Q5T5U3	1957 aa		10.29	□□□□□ -0.76
PTPN7-204	ENST00000462815	C17orf105	B2RV13	164 aa		10.29	□□□□□ -0.76
PTPN7-204	ENST00000462815		E7ESA3	106 aa		10.29	□□□□□ -0.76
PTPN7-204	ENST00000462815	HRK	O00198	91 aa		10.29	□□□□□ -0.76
PTPN7-204	ENST00000462815	CES2	O00748	559 aa		10.29	□□□□□ -0.76
PTPN7-204	ENST00000462815	FGF17	O60258	216 aa		10.29	□□□□□ -0.76
PTPN7-204	ENST00000462815	HCN1	O60741	890 aa		10.29	□□□□□ -0.76
PTPN7-204	ENST00000462815	ZWINT	O95229	277 aa		10.29	□□□□□ -0.76
PTPN7-204	ENST00000462815	KLK2	P20151	261 aa		10.29	□□□□□ -0.76
PTPN7-204	ENST00000462815	ATP5A1	P25705	553 aa	Known RBP	10.29	□□□□□ -0.76
PTPN7-204	ENST00000462815	PIGA	P37287	484 aa		10.29	□□□□□ -0.76
PTPN7-204	ENST00000462815	FOLH1	Q04609	750 aa		10.29	□□□□□ -0.76
PTPN7-204	ENST00000462815	DOC2A	Q14183	400 aa		10.29	□□□□□ -0.76
PTPN7-204	ENST00000462815	FASTKD3	Q14CZ7	662 aa	Known RBP	10.29	□□□□□ -0.76
PTPN7-204	ENST00000462815	MORF4L2	Q15014	288 aa		10.29	□□□□□ -0.76
PTPN7-204	ENST00000462815	PPP1R7	Q15435	360 aa		10.29	□□□□□ -0.76
PTPN7-204	ENST00000462815	FBXO48	Q5FWF7	155 aa		10.29	□□□□□ -0.76
PTPN7-204	ENST00000462815	TRIM40	Q6P9F5	258 aa		10.29	□□□□□ -0.76
PTPN7-204	ENST00000462815	ARSK	Q6UWY0	536 aa		10.29	□□□□□ -0.76
PTPN7-204	ENST00000462815	ZZZ3	Q8IYH5	903 aa		10.29	□□□□□ -0.76
PTPN7-204	ENST00000462815	KRT78	Q8N1N4	520 aa		10.29	□□□□□ -0.76
PTPN7-204	ENST00000462815	LRRC25	Q8N386	305 aa	Predicted RBP	10.29	□□□□□ -0.76
PTPN7-204	ENST00000462815	PDPR	Q8NCN5	879 aa		10.29	□□□□□ -0.76
PTPN7-204	ENST00000462815	NUBPL	Q8TB37	319 aa		10.29	□□□□□ -0.76
PTPN7-204	ENST00000462815	PAQR8	Q8TEZ7	354 aa		10.29	□□□□□ -0.76
PTPN7-204	ENST00000462815	ESAM	Q96AP7	390 aa		10.29	□□□□□ -0.76
PTPN7-204	ENST00000462815	NTNG2	Q96CW9	530 aa		10.29	□□□□□ -0.76
PTPN7-204	ENST00000462815	LRRC39	Q96DD0	335 aa		10.29	□□□□□ -0.76
PTPN7-204	ENST00000462815	F2RL3	Q96RI0	385 aa		10.29	□□□□□ -0.76
PTPN7-204	ENST00000462815	EGFL8	Q99944	293 aa		10.29	□□□□□ -0.76
PTPN7-204	ENST00000462815	GPATCH1	Q9BRR8	931 aa	Known RBP	10.29	□□□□□ -0.76
PTPN7-204	ENST00000462815	MS4A8	Q9BY19	250 aa		10.29	□□□□□ -0.76
PTPN7-204	ENST00000462815	OR8D2	Q9GZM6	311 aa		10.29	□□□□□ -0.76
PTPN7-204	ENST00000462815	DERL2	Q9GZP9	239 aa		10.29	□□□□□ -0.76
PTPN7-204	ENST00000462815	SLC24A3	Q9HC58	644 aa		10.29	□□□□□ -0.76
PTPN7-204	ENST00000462815	PPAN	Q9NQ55	473 aa	Known RBP	10.29	□□□□□ -0.76
PTPN7-204	ENST00000462815	RASSF1	Q9NS23	344 aa		10.29	□□□□□ -0.76
PTPN7-204	ENST00000462815	SACM1L	Q9NTJ5	587 aa		10.29	□□□□□ -0.76
PTPN7-204	ENST00000462815	CRIM1	Q9NZV1	1036 aa		10.29	□□□□□ -0.76
PTPN7-204	ENST00000462815	CTNNAL1	Q9UBT7	734 aa		10.29	□□□□□ -0.76
PTPN7-204	ENST00000462815	ASIC3	Q9UHC3	531 aa		10.29	□□□□□ -0.76
PTPN7-204	ENST00000462815	SNX12	Q9UMY4	172 aa		10.29	□□□□□ -0.76
PTPN7-204	ENST00000462815	PCDHGB3	Q9Y5G1	929 aa		10.29	□□□□□ -0.76
PTPN7-204	ENST00000462815		A0A088AWK7	358 aa		10.28	□□□□□ -0.76
PTPN7-204	ENST00000462815	ATP6AP2	A0A1C7CYW4	349 aa		10.28	□□□□□ -0.76
PTPN7-204	ENST00000462815	NCF1B	A6NI72	391 aa	Predicted RBP	10.28	□□□□□ -0.76
PTPN7-204	ENST00000462815	NCF1C	A8MVU1	366 aa	Predicted RBP	10.28	□□□□□ -0.76
PTPN7-204	ENST00000462815	ESPN	B1AK53	854 aa		10.28	□□□□□ -0.76
PTPN7-204	ENST00000462815	RTCA	O00442	366 aa	Known RBP	10.28	□□□□□ -0.76
PTPN7-204	ENST00000462815	PROM1	O43490	865 aa		10.28	□□□□□ -0.76
PTPN7-204	ENST00000462815	ATP6AP2	O75787	350 aa		10.28	□□□□□ -0.76
PTPN7-204	ENST00000462815	C1QA	P02745	245 aa		10.28	□□□□□ -0.76
PTPN7-204	ENST00000462815	CLPS	P04118	112 aa		10.28	□□□□□ -0.76
PTPN7-204	ENST00000462815	IFNA16	P05015	189 aa		10.28	□□□□□ -0.76
PTPN7-204	ENST00000462815	NCF1	P14598	390 aa	Predicted RBP	10.28	□□□□□ -0.76
PTPN7-204	ENST00000462815	ZNF10	P21506	573 aa	Predicted RBP	10.28	□□□□□ -0.76
PTPN7-204	ENST00000462815	CASP2	P42575	452 aa		10.28	□□□□□ -0.76
PTPN7-204	ENST00000462815	KCNC1	P48547	511 aa		10.28	□□□□□ -0.76
PTPN7-204	ENST00000462815	MAN2A2	P49641	1150 aa		10.28	□□□□□ -0.76
PTPN7-204	ENST00000462815	ID2	Q02363	134 aa		10.28	□□□□□ -0.76
PTPN7-204	ENST00000462815	MGAT5	Q09328	741 aa		10.28	□□□□□ -0.76
PTPN7-204	ENST00000462815	FOXD4	Q12950	439 aa	Predicted RBP	10.28	□□□□□ -0.76
PTPN7-204	ENST00000462815	SERTAD2	Q14140	314 aa		10.28	□□□□□ -0.76
PTPN7-204	ENST00000462815	EFTUD2	Q15029	972 aa	Known RBP eCLIP	10.28	□□□□□ -0.76
PTPN7-204	ENST00000462815	OR4D1	Q15615	310 aa		10.28	□□□□□ -0.76
PTPN7-204	ENST00000462815	FBXL19-AS1	Q494R0	122 aa		10.28	□□□□□ -0.76
PTPN7-204	ENST00000462815	CDKL4	Q5MAI5	379 aa		10.28	□□□□□ -0.76
PTPN7-204	ENST00000462815	OPN5	Q6U736	354 aa		10.28	□□□□□ -0.76
PTPN7-204	ENST00000462815	FAM47E	Q6ZV65	393 aa		10.28	□□□□□ -0.76
PTPN7-204	ENST00000462815	ULK2	Q8IYT8	1036 aa		10.28	□□□□□ -0.76
PTPN7-204	ENST00000462815	SLC35F6	Q8N357	371 aa		10.28	□□□□□ -0.76
PTPN7-204	ENST00000462815	SPATA6L	Q8N4H0	392 aa		10.28	□□□□□ -0.76
PTPN7-204	ENST00000462815	ACOT4	Q8N9L9	421 aa		10.28	□□□□□ -0.76
PTPN7-204	ENST00000462815	OR10Q1	Q8NGQ4	319 aa		10.28	□□□□□ -0.76

Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms